FHIR IG Statistics: StructureDefinition/SpecimenSequence

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{
  "resourceType": "StructureDefinition",
  "id": "SpecimenSequence",
  "url": "https://demis.rki.de/fhir/igs/StructureDefinition/SpecimenSequence",
  "version": "2.0.0",
  "name": "SpecimenSequence",
  "title": "Sequenz-Probe",
  "status": "active",
  "date": "2024-07-24",
  "description": "Die Sequenz-Probe umfasst Angaben zum Sequenzierungsisolat, zum Sequenzierungsprotokoll, zur Sequenzierungsstrategie, zu den Reagenzien der Verarbeitung (Primer-Schemes, die zur Amplicon-Sequenzierung verwendet wurden und die Adapter), sowie das Datum des Probeneingangs und das Probenentnahmedatum. Die IGS-ID (DEMIS-Identifier für die Sequenz), die beim Sequenzupload vergeben wird, wird in der entsprechenden Extension im processing-Element angegeben.",
  "fhirVersion": "4.0.1",
  "kind": "resource",
  "abstract": true,
  "type": "Specimen",
  "baseDefinition": "https://demis.rki.de/fhir/StructureDefinition/Specimen",
  "derivation": "constraint",
  "differential": {
    "element": [
      {
        "id": "Specimen.meta",
        "path": "Specimen.meta",
        "min": 1,
        "mustSupport": true
      },
      {
        "id": "Specimen.meta.profile",
        "path": "Specimen.meta.profile",
        "min": 1,
        "max": "1",
        "fixedCanonical": "https://demis.rki.de/fhir/igs/StructureDefinition/SpecimenSequence",
        "mustSupport": true
      },
      {
        "id": "Specimen.extension",
        "path": "Specimen.extension",
        "slicing": {
          "discriminator": [
            {
              "type": "value",
              "path": "url"
            }
          ],
          "rules": "open"
        },
        "min": 0
      },
      {
        "id": "Specimen.extension:isolate",
        "path": "Specimen.extension",
        "sliceName": "isolate",
        "short": "Zur Sequenzierung verwendetes Isolat (Laborinterne Nummer/Name/Identifier)",
        "definition": "Zur Sequenzierung verwendetes Isolat (Laborinterne Nummer/Name/Identifier)",
        "min": 0,
        "max": "1",
        "type": [
          {
            "code": "Extension",
            "profile": [
              "https://demis.rki.de/fhir/igs/StructureDefinition/Isolate"
            ]
          }
        ],
        "mustSupport": true,
        "isModifier": false
      },
      {
        "id": "Specimen.subject",
        "path": "Specimen.subject",
        "short": "Betroffene Person (nichtnamentlich)",
        "definition": "Betroffene Person (nichtnamentlich)",
        "type": [
          {
            "code": "Reference",
            "targetProfile": [
              "https://demis.rki.de/fhir/StructureDefinition/NotifiedPersonNotByName"
            ],
            "aggregation": [
              "bundled"
            ]
          }
        ]
      },
      {
        "id": "Specimen.processing",
        "path": "Specimen.processing",
        "min": 1
      },
      {
        "id": "Specimen.processing.description",
        "path": "Specimen.processing.description",
        "short": "Name des Sequenzierungsprotokolls",
        "definition": "Name des Sequenzierungsprotokolls",
        "mustSupport": true
      },
      {
        "id": "Specimen.processing.procedure",
        "path": "Specimen.processing.procedure",
        "short": "Sequenzierungsstrategie",
        "definition": "Sequenzierungsstrategie",
        "mustSupport": true,
        "binding": {
          "extension": [
            {
              "url": "http://hl7.org/fhir/StructureDefinition/elementdefinition-bindingName",
              "valueString": "SpecimenProcessingProcedure"
            }
          ],
          "strength": "required",
          "description": "Sequenzierungsstrategie",
          "valueSet": "https://demis.rki.de/fhir/igs/ValueSet/sequencingStrategy"
        }
      },
      {
        "id": "Specimen.processing.additive",
        "path": "Specimen.processing.additive",
        "slicing": {
          "discriminator": [
            {
              "type": "value",
              "path": "resolve().code.coding"
            }
          ],
          "rules": "closed"
        }
      },
      {
        "id": "Specimen.processing.additive:adapterSubstance",
        "path": "Specimen.processing.additive",
        "sliceName": "adapterSubstance",
        "short": "Adapter, die zur Library preparation verwendet wurden",
        "definition": "Adapter, die zur Library preparation verwendet wurden",
        "type": [
          {
            "code": "Reference",
            "targetProfile": [
              "https://demis.rki.de/fhir/igs/StructureDefinition/AdapterSubstance"
            ],
            "aggregation": [
              "bundled"
            ]
          }
        ],
        "mustSupport": true
      },
      {
        "id": "Specimen.processing.additive:primerSubstance",
        "path": "Specimen.processing.additive",
        "sliceName": "primerSubstance",
        "short": "Primer-Schemes, die zur Amplicon-Sequenzierung verwendet wurden",
        "definition": "Primer-Schemes, die zur Amplicon-Sequenzierung verwendet wurden",
        "type": [
          {
            "code": "Reference",
            "targetProfile": [
              "https://demis.rki.de/fhir/igs/StructureDefinition/PrimerSubstance"
            ],
            "aggregation": [
              "bundled"
            ]
          }
        ],
        "mustSupport": true
      },
      {
        "id": "Specimen.processing.time[x]",
        "path": "Specimen.processing.time[x]",
        "short": "Verarbeitungsdatum z.B. Sequenzierungsdatum",
        "definition": "Datum, an dem die Probe verarbeitet z.B. sequenziert wurde",
        "type": [
          {
            "code": "dateTime"
          }
        ],
        "mustSupport": true
      }
    ]
  }
}