FHIR IG Statistics: StructureDefinition/Sequence

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{
  "resourceType": "StructureDefinition",
  "id": "Sequence",
  "url": "https://demis.rki.de/fhir/igs/StructureDefinition/Sequence",
  "version": "3.0.1",
  "name": "Sequence",
  "title": "Sequenz",
  "status": "active",
  "date": "2024-11-26",
  "description": "Die Sequenz umfasst Informationen zu einer biologischen Sequenz, hier DNA-Sequenz. Es kann sich hierbei auch um Sequenzrohdaten oder assemblierte Daten handeln, jeweils mit den dazugehörigen Metadaten (z.B. Datum der Probennahme, Sequenzierungsgerät, Adapter für die Library Preparation, Upload in eine Online-Datenbank (Repositorium), etc.) handeln.",
  "fhirVersion": "4.0.1",
  "kind": "resource",
  "abstract": false,
  "type": "MolecularSequence",
  "baseDefinition": "http://hl7.org/fhir/StructureDefinition/MolecularSequence",
  "derivation": "constraint",
  "differential": {
    "element": [
      {
        "id": "MolecularSequence.meta",
        "path": "MolecularSequence.meta",
        "min": 1,
        "mustSupport": true
      },
      {
        "id": "MolecularSequence.meta.profile",
        "path": "MolecularSequence.meta.profile",
        "min": 1,
        "max": "1",
        "fixedCanonical": "https://demis.rki.de/fhir/igs/StructureDefinition/Sequence",
        "mustSupport": true
      },
      {
        "id": "MolecularSequence.extension",
        "path": "MolecularSequence.extension",
        "slicing": {
          "discriminator": [
            {
              "type": "value",
              "path": "url"
            }
          ],
          "rules": "open"
        },
        "min": 1,
        "mustSupport": true
      },
      {
        "id": "MolecularSequence.extension:sequenceAuthor",
        "path": "MolecularSequence.extension",
        "sliceName": "sequenceAuthor",
        "short": "Person/Labor, die/das verantwortlich für die Sequenz ist",
        "definition": "Person/Labor, die/das verantwortlich für die Sequenz ist",
        "min": 0,
        "max": "1",
        "type": [
          {
            "code": "Extension",
            "profile": [
              "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceAuthor"
            ]
          }
        ],
        "mustSupport": true,
        "isModifier": false
      },
      {
        "id": "MolecularSequence.extension:sequencingReason",
        "path": "MolecularSequence.extension",
        "sliceName": "sequencingReason",
        "short": "Grund der Sequenzierung",
        "definition": "Grund der Sequenzierung",
        "min": 0,
        "max": "1",
        "type": [
          {
            "code": "Extension",
            "profile": [
              "https://demis.rki.de/fhir/igs/StructureDefinition/SequencingReason"
            ]
          }
        ],
        "mustSupport": true,
        "isModifier": false
      },
      {
        "id": "MolecularSequence.extension:sequenceDocumentReference",
        "path": "MolecularSequence.extension",
        "sliceName": "sequenceDocumentReference",
        "short": "Referenz auf die Sequenz",
        "definition": "Referenz auf die Sequenz",
        "min": 1,
        "type": [
          {
            "code": "Extension",
            "profile": [
              "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceDocumentReference"
            ]
          }
        ],
        "mustSupport": true,
        "isModifier": false
      },
      {
        "id": "MolecularSequence.identifier",
        "path": "MolecularSequence.identifier",
        "short": "Laboreigener Identifier der Probe",
        "definition": "Eineindeutiger Identifier der Probe, die vom einreichenden Labor verwendet wird.",
        "min": 1,
        "max": "1",
        "mustSupport": true
      },
      {
        "id": "MolecularSequence.type",
        "path": "MolecularSequence.type",
        "short": "Typ der Sequenz",
        "definition": "Für DEMIS ist der Typ grundsätzlich mit dem Wert „dna“ zu belegen.",
        "fixedCode": "dna",
        "mustSupport": true
      },
      {
        "id": "MolecularSequence.patient",
        "path": "MolecularSequence.patient",
        "max": "0"
      },
      {
        "id": "MolecularSequence.specimen",
        "path": "MolecularSequence.specimen",
        "short": "Verweis auf die Sequenz-Probe",
        "definition": "Verweis auf die Sequenz-Probe",
        "min": 1,
        "type": [
          {
            "code": "Reference",
            "targetProfile": [
              "https://demis.rki.de/fhir/igs/StructureDefinition/SpecimenSequence"
            ],
            "aggregation": [
              "bundled"
            ]
          }
        ],
        "mustSupport": true
      },
      {
        "id": "MolecularSequence.specimen.reference",
        "path": "MolecularSequence.specimen.reference",
        "min": 1,
        "mustSupport": true
      },
      {
        "id": "MolecularSequence.device",
        "path": "MolecularSequence.device",
        "short": "Verweis auf das Sequenziergerät",
        "definition": "Verweis auf das Sequenziergerät",
        "min": 1,
        "type": [
          {
            "code": "Reference",
            "targetProfile": [
              "https://demis.rki.de/fhir/igs/StructureDefinition/SequencingDevice"
            ],
            "aggregation": [
              "bundled"
            ]
          }
        ],
        "mustSupport": true
      },
      {
        "id": "MolecularSequence.device.reference",
        "path": "MolecularSequence.device.reference",
        "min": 1,
        "mustSupport": true
      },
      {
        "id": "MolecularSequence.performer",
        "path": "MolecularSequence.performer",
        "short": "Verweis auf die Melder-Einrichtung",
        "definition": "Verweis auf die Melder-Einrichtung",
        "min": 1,
        "type": [
          {
            "code": "Reference",
            "targetProfile": [
              "https://demis.rki.de/fhir/StructureDefinition/NotifierFacility"
            ],
            "aggregation": [
              "bundled"
            ]
          }
        ],
        "mustSupport": true
      },
      {
        "id": "MolecularSequence.performer.reference",
        "path": "MolecularSequence.performer.reference",
        "min": 1,
        "mustSupport": true
      },
      {
        "id": "MolecularSequence.quantity",
        "path": "MolecularSequence.quantity",
        "max": "0"
      },
      {
        "id": "MolecularSequence.referenceSeq",
        "path": "MolecularSequence.referenceSeq",
        "max": "0"
      },
      {
        "id": "MolecularSequence.variant",
        "path": "MolecularSequence.variant",
        "max": "0"
      },
      {
        "id": "MolecularSequence.observedSeq",
        "path": "MolecularSequence.observedSeq",
        "max": "0"
      },
      {
        "id": "MolecularSequence.quality",
        "path": "MolecularSequence.quality",
        "max": "0"
      },
      {
        "id": "MolecularSequence.readCoverage",
        "path": "MolecularSequence.readCoverage",
        "max": "0"
      },
      {
        "id": "MolecularSequence.repository",
        "path": "MolecularSequence.repository",
        "short": "Repositorium, in welches die Sequenz hochgeladen wird",
        "definition": "Repositorium, in welches die Sequenz hochgeladen wird",
        "mustSupport": true
      },
      {
        "id": "MolecularSequence.repository.extension",
        "path": "MolecularSequence.repository.extension",
        "slicing": {
          "discriminator": [
            {
              "type": "value",
              "path": "url"
            }
          ],
          "rules": "open"
        },
        "min": 1,
        "mustSupport": true
      },
      {
        "id": "MolecularSequence.repository.extension:sequenceUploadDate",
        "path": "MolecularSequence.repository.extension",
        "sliceName": "sequenceUploadDate",
        "short": "Datum des Sequenz-Uploads",
        "definition": "Datum des Sequenz-Uploads",
        "min": 0,
        "max": "1",
        "type": [
          {
            "code": "Extension",
            "profile": [
              "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceUploadDate"
            ]
          }
        ],
        "mustSupport": true,
        "isModifier": false
      },
      {
        "id": "MolecularSequence.repository.extension:sequenceUploadSubmitter",
        "path": "MolecularSequence.repository.extension",
        "sliceName": "sequenceUploadSubmitter",
        "short": "Verantwortliche/es Person/Labor für den Sequenz-Upload",
        "definition": "Verantwortliche/es Person/Labor für den Sequenz-Upload.",
        "min": 0,
        "max": "1",
        "type": [
          {
            "code": "Extension",
            "profile": [
              "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceUploadSubmitter"
            ]
          }
        ],
        "mustSupport": true,
        "isModifier": false
      },
      {
        "id": "MolecularSequence.repository.extension:sequenceUploadStatus",
        "path": "MolecularSequence.repository.extension",
        "sliceName": "sequenceUploadStatus",
        "short": "Status des Sequenz-Uploads",
        "definition": "Status des Sequenz-Uploads.",
        "min": 1,
        "max": "1",
        "type": [
          {
            "code": "Extension",
            "profile": [
              "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceUploadStatus"
            ]
          }
        ],
        "mustSupport": true,
        "isModifier": false
      },
      {
        "id": "MolecularSequence.repository.url",
        "path": "MolecularSequence.repository.url",
        "short": "Hyperlink auf die Sequenz im Repositorium",
        "definition": "Hyperlink auf die Sequenz im Repositorium.",
        "mustSupport": true
      },
      {
        "id": "MolecularSequence.repository.name",
        "path": "MolecularSequence.repository.name",
        "short": "Name des Repositoriums",
        "definition": "Name des Repositoriums, in welches die Sequenz hochgeladen wird. Der Wert muss entsprechend des vom RKI definierten ValueSets https://demis.rki.de/fhir/igs/ValueSet/repositoryName dargestellt werden.",
        "min": 1,
        "mustSupport": true,
        "binding": {
          "strength": "required",
          "valueSet": "https://demis.rki.de/fhir/igs/ValueSet/repositoryName"
        }
      },
      {
        "id": "MolecularSequence.repository.datasetId",
        "path": "MolecularSequence.repository.datasetId",
        "short": "Identifier der Sequenz im Repositorium",
        "definition": "Identifier der Sequenz im Repositorium.",
        "mustSupport": true
      },
      {
        "id": "MolecularSequence.pointer",
        "path": "MolecularSequence.pointer",
        "max": "0"
      },
      {
        "id": "MolecularSequence.structureVariant",
        "path": "MolecularSequence.structureVariant",
        "max": "0"
      }
    ]
  }
}