FHIR IG Statistics: StructureDefinition/mii-pr-mtb-molekularer-biomarker

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{
  "resourceType": "StructureDefinition",
  "id": "mii-pr-mtb-molekularer-biomarker",
  "url": "https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-pr-mtb-molekularer-biomarker",
  "version": "2024.0.0-ballot",
  "name": "MII_PR_MTB_Molekularer_Biomarker",
  "title": "MII PR MTB Molekularer Biomarker",
  "status": "draft",
  "publisher": "Medizininformatik Initiative",
  "contact": [
    {
      "telecom": [
        {
          "system": "url",
          "value": "https://www.medizininformatik-initiative.de"
        }
      ]
    }
  ],
  "description": "Stellt einen gefundenden Biomarker dar. Das Profil ist auf Basis von https://build.fhir.org/ig/HL7/genomics-reporting/StructureDefinition-molecular-biomarker.html nachgebaut.",
  "fhirVersion": "4.0.1",
  "kind": "resource",
  "abstract": false,
  "type": "Observation",
  "baseDefinition": "http://hl7.org/fhir/StructureDefinition/Observation",
  "derivation": "constraint",
  "differential": {
    "element": [
      {
        "id": "Observation.meta",
        "path": "Observation.meta",
        "mustSupport": true
      },
      {
        "id": "Observation.meta.profile",
        "path": "Observation.meta.profile",
        "mustSupport": true
      },
      {
        "id": "Observation.category",
        "path": "Observation.category",
        "slicing": {
          "discriminator": [
            {
              "type": "value",
              "path": "coding"
            }
          ],
          "rules": "open",
          "description": "Slices for category",
          "ordered": false
        },
        "min": 3
      },
      {
        "id": "Observation.category:labCategory",
        "path": "Observation.category",
        "sliceName": "labCategory",
        "min": 1,
        "max": "1",
        "mustSupport": true
      },
      {
        "id": "Observation.category:labCategory.coding",
        "path": "Observation.category.coding",
        "min": 1,
        "max": "1",
        "patternCoding": {
          "code": "laboratory",
          "system": "http://terminology.hl7.org/CodeSystem/observation-category"
        }
      },
      {
        "id": "Observation.category:geCategory",
        "path": "Observation.category",
        "sliceName": "geCategory",
        "min": 1,
        "max": "1"
      },
      {
        "id": "Observation.category:geCategory.coding",
        "path": "Observation.category.coding",
        "min": 1,
        "max": "1",
        "patternCoding": {
          "code": "GE",
          "system": "http://terminology.hl7.org/CodeSystem/v2-0074"
        }
      },
      {
        "id": "Observation.category:mbCategory",
        "path": "Observation.category",
        "sliceName": "mbCategory",
        "min": 1,
        "max": "1"
      },
      {
        "id": "Observation.category:mbCategory.coding",
        "path": "Observation.category.coding",
        "min": 1,
        "max": "1",
        "patternCoding": {
          "code": "biomarker-category",
          "system": "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs"
        }
      },
      {
        "id": "Observation.code",
        "path": "Observation.code",
        "binding": {
          "strength": "extensible",
          "valueSet": "https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/ValueSet/mii-vs-mtb-molekulare-biomarker"
        }
      },
      {
        "id": "Observation.focus",
        "path": "Observation.focus",
        "type": [
          {
            "code": "Reference",
            "targetProfile": [
              "https://www.medizininformatik-initiative.de/fhir/ext/modul-onko/StructureDefinition/mii-pr-onko-diagnose-primaertumor",
              "https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-pr-mtb-diagnose-primaertumor"
            ]
          }
        ],
        "mustSupport": true
      },
      {
        "id": "Observation.derivedFrom",
        "path": "Observation.derivedFrom",
        "slicing": {
          "discriminator": [
            {
              "type": "profile",
              "path": "resolve()"
            }
          ],
          "rules": "open",
          "description": "Slices for derivedFrom",
          "ordered": false
        }
      },
      {
        "id": "Observation.derivedFrom:variant",
        "path": "Observation.derivedFrom",
        "sliceName": "variant",
        "min": 0,
        "max": "*",
        "type": [
          {
            "code": "Reference",
            "targetProfile": [
              "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant"
            ]
          }
        ]
      },
      {
        "id": "Observation.derivedFrom:genotype",
        "path": "Observation.derivedFrom",
        "sliceName": "genotype",
        "min": 0,
        "max": "*",
        "type": [
          {
            "code": "Reference",
            "targetProfile": [
              "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype"
            ]
          }
        ]
      },
      {
        "id": "Observation.derivedFrom:haplotype",
        "path": "Observation.derivedFrom",
        "sliceName": "haplotype",
        "min": 0,
        "max": "*",
        "type": [
          {
            "code": "Reference",
            "targetProfile": [
              "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype"
            ]
          }
        ]
      },
      {
        "id": "Observation.component",
        "path": "Observation.component",
        "slicing": {
          "discriminator": [
            {
              "type": "value",
              "path": "code"
            }
          ],
          "rules": "open",
          "description": "Slices for component",
          "ordered": false
        }
      },
      {
        "id": "Observation.component:gene-studied",
        "path": "Observation.component",
        "sliceName": "gene-studied",
        "min": 0,
        "max": "*"
      },
      {
        "id": "Observation.component:gene-studied.code.coding",
        "path": "Observation.component.code.coding",
        "patternCoding": {
          "code": "48018-6",
          "system": "http://loinc.org"
        }
      },
      {
        "id": "Observation.component:gene-studied.value[x]",
        "path": "Observation.component.value[x]",
        "slicing": {
          "discriminator": [
            {
              "type": "type",
              "path": "$this"
            }
          ],
          "ordered": false,
          "rules": "open"
        }
      },
      {
        "id": "Observation.component:gene-studied.value[x]:valueCodeableConcept",
        "path": "Observation.component.value[x]",
        "sliceName": "valueCodeableConcept",
        "short": "The HGNC gene symbol is to be used as display text and the HGNC gene ID used as the code. If no HGNC code issued for this gene yet, NCBI gene IDs SHALL be used.",
        "min": 0,
        "max": "1",
        "type": [
          {
            "code": "CodeableConcept"
          }
        ],
        "binding": {
          "strength": "extensible",
          "valueSet": "http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs"
        }
      },
      {
        "id": "Observation.component:biomarker-category",
        "path": "Observation.component",
        "sliceName": "biomarker-category",
        "min": 0,
        "max": "*",
        "mustSupport": true
      },
      {
        "id": "Observation.component:biomarker-category.code",
        "path": "Observation.component.code",
        "patternCodeableConcept": {
          "coding": [
            {
              "code": "biomarker-category",
              "system": "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs"
            }
          ]
        }
      },
      {
        "id": "Observation.component:biomarker-category.value[x]",
        "path": "Observation.component.value[x]",
        "type": [
          {
            "code": "CodeableConcept"
          }
        ],
        "binding": {
          "strength": "preferred",
          "valueSet": "http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-biomarker-category-vs"
        }
      }
    ]
  }
}