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Packagemedmij.fhir.nl.r4.pathology
Resource TypeStructureDefinition
IdStructureDefinition-path-Request.Specimen.json
FHIR VersionR4
Sourcehttps://simplifier.net/resolve?scope=medmij.fhir.nl.r4.pathology@1.0.0-alpha.3&canonical=http://medmij.nl/fhir/StructureDefinition/path-Request.Specimen
URLhttp://medmij.nl/fhir/StructureDefinition/path-Request.Specimen
Version1.0.0-alpha.3
Statusdraft
NamePathRequestSpecimen
Titlepath Request.Specimen
Realmnl
DescriptionSpecimen that will be examined by a laboratory.
PurposeThis Specimen resource represents the specimen-related concepts from the Request Clinical Information Model (CIM) for patient use cases in the context of Pathology.
CopyrightCopyright and related rights waived via CC0, https://creativecommons.org/publicdomain/zero/1.0/. This does not apply to information from third parties, for example a medical terminology system. The implementer alone is responsible for identifying and obtaining any necessary licenses or authorizations to utilize third party IP in connection with the specification or otherwise.
TypeSpecimen
Kindresource

Resources that use this resource

CapabilityStatement
medmij.fhir.nl.r4.pathology#1.0.0-alpha.3path-Retrievepath Retrieve
medmij.fhir.nl.r4.pathology#1.0.0-alpha.3path-Servepath Serve
StructureDefinition
medmij.fhir.nl.r4.pathology#1.0.0-alpha.3path-Report.ClinicalInformationpath Report.ClinicalInformation
medmij.fhir.nl.r4.pathology#1.0.0-alpha.3path-Report.Macroscopypath Report.Macroscopy
medmij.fhir.nl.r4.pathology#1.0.0-alpha.3path-Report.Microscopypath Report.Microscopy
medmij.fhir.nl.r4.pathology#1.0.0-alpha.3path-Report.ProtocolDataItempath Report.ProtocolDataItem
medmij.fhir.nl.r4.pathology#1.0.0-alpha.3path-Reportpath Report
medmij.fhir.nl.r4.pathology#1.0.0-alpha.3path-Request.Specimenpath Request.Specimen
medmij.fhir.nl.r4.pathology#1.0.0-alpha.3path-Requestpath Request

Resources that this resource uses

StructureDefinition
medmij.fhir.nl.r4.pathology#1.0.0-alpha.3path-Patientpath Patient
medmij.fhir.nl.r4.pathology#1.0.0-alpha.3path-Report.ReportIdentifierpath Report.ReportIdentifier
medmij.fhir.nl.r4.pathology#1.0.0-alpha.3path-Request.Specimenpath Request.Specimen
ValueSet
nictiz.fhir.nl.r4.zib2020#0.12.0-labtrial.12.16.840.1.113883.2.4.3.11.60.40.2.17.2.4--20200901000000AfdelingSpecialismeCodelijst

Narrative

Note: links and images are rebased to the (stated) source

No narrative is provided for definitional resources. A human-readable rendering can be found in the implementation guide(s) where this resource is used.

Source1

{
  "resourceType": "StructureDefinition",
  "id": "path-Request.Specimen",
  "text": {
    "status": "empty",
    "div": "<!-- snip (see above) -->"
  },
  "url": "http://medmij.nl/fhir/StructureDefinition/path-Request.Specimen",
  "version": "1.0.0-alpha.3",
  "name": "PathRequestSpecimen",
  "title": "path Request.Specimen",
  "status": "draft",
  "publisher": "MedMij",
  "contact": [
    {
      "name": "MedMij",
      "telecom": [
        {
          "system": "email",
          "value": "info@medmij.nl",
          "use": "work"
        }
      ]
    }
  ],
  "description": "Specimen that will be examined by a laboratory.",
  "purpose": "This Specimen resource represents the specimen-related concepts from the Request Clinical Information Model (CIM) for patient use cases in the context of Pathology.",
  "copyright": "Copyright and related rights waived via CC0, https://creativecommons.org/publicdomain/zero/1.0/. This does not apply to information from third parties, for example a medical terminology system. The implementer alone is responsible for identifying and obtaining any necessary licenses or authorizations to utilize third party IP in connection with the specification or otherwise.",
  "fhirVersion": "4.0.1",
  "mapping": [
    {
      "identity": "mercurius-core-dataset-2-0",
      "name": "Mercurius Core Dataset 2.0"
    },
    {
      "identity": "medmij-core-dataset-120-20260923",
      "name": "Dataset MedMij R4 Core 1.2.0 20260923"
    },
    {
      "identity": "path-dataset-100-alpha3-20260923",
      "name": "Dataset Pathologie MedMij 1.0.0-alpha.3 20260923"
    }
  ],
  "kind": "resource",
  "abstract": false,
  "type": "Specimen",
  "baseDefinition": "http://hl7.org/fhir/StructureDefinition/Specimen",
  "derivation": "constraint",
  "differential": {
    "element": [
      {
        "id": "Specimen",
        "path": "Specimen",
        "short": "Specimen",
        "definition": "Specimen that will be examined by a laboratory.",
        "comment": "This resource is used to convey either the primary specimen or an individual sample taken from that specimen. In the latter case, the `.parent` refers to the Specimen resource corresponding to the primary specimen.",
        "alias": [
          "Monster"
        ],
        "mapping": [
          {
            "identity": "path-dataset-100-alpha3-20260923",
            "map": "path-dataelement-8",
            "comment": "Specimen"
          },
          {
            "identity": "path-dataset-100-alpha3-20260923",
            "map": "path-dataelement-15",
            "comment": "Sample"
          }
        ]
      },
      {
        "id": "Specimen.meta",
        "path": "Specimen.meta",
        "min": 1
      },
      {
        "id": "Specimen.meta.tag",
        "path": "Specimen.meta.tag",
        "slicing": {
          "discriminator": [
            {
              "type": "value",
              "path": "$this"
            }
          ],
          "rules": "open"
        },
        "min": 1
      },
      {
        "id": "Specimen.meta.tag:careType",
        "path": "Specimen.meta.tag",
        "sliceName": "careType",
        "slicing": {
          "discriminator": [
            {
              "type": "value",
              "path": "$this"
            }
          ],
          "rules": "open"
        },
        "short": "CareType",
        "definition": "The type of the healthcare provider responsible for the delivered care, or more specifically, the specialty of the department and/or health professional that delivered care. It enables patients and systems to interpret the origin and context of medical data.",
        "comment": "Note that the `careType` slice is a slice on `.meta.tag`, which might not be immediately clear based on the rendering.",
        "alias": [
          "Zorgtype"
        ],
        "min": 1,
        "max": "*",
        "binding": {
          "strength": "required",
          "valueSet": "http://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.17.2.4--20200901000000"
        },
        "mapping": [
          {
            "identity": "medmij-core-dataset-120-20260923",
            "map": "medmij-core-dataelement-123",
            "comment": "CareType"
          }
        ]
      },
      {
        "id": "Specimen.meta.tag:careType/pathology",
        "path": "Specimen.meta.tag",
        "sliceName": "careType/pathology",
        "comment": "Note that the `pathology` slice is a reslice of the `careType` slice, which might not be immediately clear based on the rendering.",
        "min": 1,
        "max": "1",
        "patternCoding": {
          "system": "urn:oid:2.16.840.1.113883.2.4.6.7",
          "code": "0388"
        }
      },
      {
        "id": "Specimen.identifier",
        "path": "Specimen.identifier",
        "slicing": {
          "discriminator": [
            {
              "type": "profile",
              "path": "$this"
            }
          ],
          "rules": "open"
        },
        "min": 1
      },
      {
        "id": "Specimen.identifier:specimenIdentifier",
        "path": "Specimen.identifier",
        "sliceName": "specimenIdentifier",
        "short": "IdentificationNumber / SpecimenIdentifier / SampleIdentifier",
        "definition": "Identifier of the specimen.",
        "comment": "This element is used to convey the identifier of either the primary specimen or an individual sample taken from that specimen, based on which specimen this resource represents.\n\n  * In the former case, as the specimen is always directly linked to a request in Mercurius, this identifier's value equals the RequestIdentifier value, appended with _-0_. In particular, this identifier attains a `.value` of the form _[TCSB]YY-nnnnn-0_ or _[TCSB]YY-nnnnnn-0_ (based on the laboratory the report originates from), e.g. T26-012345-0.\n  * In the latter case, this identifier's value equals the RequestIdentifier value, appended with _-[SampleNumber]_. In particular, this identifier attains a `.value` of the form _[TCSB]YY-nnnnn-[SampleNumber]_ or _[TCSB]YY-nnnnnn-[SampleNumber]_ (based on the laboratory the report originates from), e.g. T26-012345-1.\n\nIn both cases, the `.system` SHALL be of the form _urn:oid:2.16.840.1.113883.2.4.3.23.3.N.1_ where _N_ is the lab number (i.e. _labid_).",
        "alias": [
          "Identificatienummer",
          "MonsterIdentificatienummer",
          "SampleIdentificatienummer"
        ],
        "min": 1,
        "max": "1",
        "type": [
          {
            "code": "Identifier",
            "profile": [
              "http://medmij.nl/fhir/StructureDefinition/path-Report.ReportIdentifier"
            ]
          }
        ],
        "mapping": [
          {
            "identity": "path-dataset-100-alpha3-20260923",
            "map": "path-dataelement-14",
            "comment": "SpecimenIdentifier"
          },
          {
            "identity": "path-dataset-100-alpha3-20260923",
            "map": "path-dataelement-16",
            "comment": "SampleNumber (implicit)"
          }
        ]
      },
      {
        "id": "Specimen.type",
        "path": "Specimen.type",
        "short": "SpecimenMaterial",
        "definition": "Type of specimen.",
        "comment": "The (string) value of the SpecimenMaterial concept present in the source system SHALL be translated to a SNOMED CT code using the [Palga On-line Thesaurus](https://www.palga.nl/voor-pathologen/palga-on-line-thesaurus), if possible. In any case, the original value SHALL be conveyed via `.text`.",
        "alias": [
          "AardMateriaal"
        ],
        "min": 1,
        "mapping": [
          {
            "identity": "mercurius-core-dataset-2-0",
            "map": "mercurius-core-rubriek-76",
            "comment": "aardmateriaal"
          }
        ]
      },
      {
        "id": "Specimen.type.coding.system",
        "path": "Specimen.type.coding.system",
        "patternUri": "http://snomed.info/sct"
      },
      {
        "id": "Specimen.type.text",
        "path": "Specimen.type.text",
        "min": 1
      },
      {
        "id": "Specimen.subject",
        "path": "Specimen.subject",
        "short": "Patient",
        "definition": "The patient as subject of the information.",
        "alias": [
          "Patiƫnt"
        ],
        "min": 1,
        "type": [
          {
            "code": "Reference",
            "targetProfile": [
              "http://hl7.org/fhir/StructureDefinition/Patient",
              "http://medmij.nl/fhir/StructureDefinition/path-Patient"
            ]
          }
        ],
        "mapping": [
          {
            "identity": "medmij-core-dataset-120-20260923",
            "map": "medmij-core-dataelement-116",
            "comment": "Patient"
          }
        ]
      },
      {
        "id": "Specimen.receivedTime",
        "path": "Specimen.receivedTime",
        "short": "ReceivedDate",
        "definition": "Date when specimen is received at the laboratory.",
        "alias": [
          "DatumOntvangst"
        ],
        "min": 1,
        "mapping": [
          {
            "identity": "mercurius-core-dataset-2-0",
            "map": "mercurius-core-rubriek-80",
            "comment": "datumontvangst"
          }
        ]
      },
      {
        "id": "Specimen.parent",
        "path": "Specimen.parent",
        "comment": "If this Specimen resource corresponds to a sample taken from the primary specimen, the latter is referenced here.",
        "type": [
          {
            "code": "Reference",
            "targetProfile": [
              "http://hl7.org/fhir/StructureDefinition/Specimen",
              "http://medmij.nl/fhir/StructureDefinition/path-Request.Specimen"
            ]
          }
        ]
      },
      {
        "id": "Specimen.collection.collected[x]",
        "path": "Specimen.collection.collected[x]",
        "slicing": {
          "discriminator": [
            {
              "type": "type",
              "path": "$this"
            }
          ],
          "ordered": false,
          "rules": "open"
        }
      },
      {
        "id": "Specimen.collection.collected[x]:collectedDateTime",
        "path": "Specimen.collection.collected[x]",
        "sliceName": "collectedDateTime",
        "short": "CollectionDate",
        "definition": "Date when specimen is taken from patient.",
        "alias": [
          "DatumAfname"
        ],
        "min": 0,
        "max": "1",
        "type": [
          {
            "code": "dateTime"
          }
        ],
        "mapping": [
          {
            "identity": "mercurius-core-dataset-2-0",
            "map": "mercurius-core-rubriek-77",
            "comment": "datumafname"
          }
        ]
      },
      {
        "id": "Specimen.collection.method",
        "path": "Specimen.collection.method",
        "short": "CollectionMethod",
        "definition": "The way the specimen is collected (biopsy, resection, etc.).",
        "comment": "The (string) value of the CollectionMethod concept present in the source system SHALL be translated to a SNOMED CT code using the [Palga On-line Thesaurus](https://www.palga.nl/voor-pathologen/palga-on-line-thesaurus), if possible. In any case, the original value SHALL be conveyed via `.text`.",
        "alias": [
          "Verkrijgingswijze"
        ],
        "mapping": [
          {
            "identity": "mercurius-core-dataset-2-0",
            "map": "mercurius-core-rubriek-87",
            "comment": "verkrijgingswijze"
          }
        ]
      },
      {
        "id": "Specimen.collection.method.coding.system",
        "path": "Specimen.collection.method.coding.system",
        "patternUri": "http://snomed.info/sct"
      },
      {
        "id": "Specimen.collection.method.text",
        "path": "Specimen.collection.method.text",
        "min": 1
      }
    ]
  }
}