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FHIR IG Statistics: StructureDefinition/mii-pr-mtb-rna-seq

Packagede.medizininformatikinitiative.kerndatensatz.mtb
Resource TypeStructureDefinition
Idmii-pr-mtb-rna-seq
FHIR VersionR4
Sourcehttps://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/ImplementationGuide/mii-ig-mtb-de/https://simplifier.net/resolve?scope=de.medizininformatikinitiative.kerndatensatz.mtb@2025.0.0-ballot&canonical=https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-pr-mtb-rna-seq
URLhttps://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-pr-mtb-rna-seq
Version2024.0.0-ballot
Statusdraft
NameMII_PR_MTB_RNA_Seq
TitleMII PR MTB RNA Seq
Realmde
DescriptionRNA Seq
TypeObservation
Kindresource

Resources that use this resource

StructureDefinition
mii-pr-mtb-ngs-berichtMII PR MTB NGS-Bericht

Resources that this resource uses

StructureDefinition
varianteMII PR MolGen Variante
mii-pr-mtb-diagnose-primaertumorMII PR MTB Diagnose Primärtumor
mii-pr-onko-diagnose-primaertumorMII PR Onkologie Diagnose Primärtumor

Narrative

No narrative content found in resource


Source

{
  "resourceType": "StructureDefinition",
  "id": "mii-pr-mtb-rna-seq",
  "url": "https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-pr-mtb-rna-seq",
  "version": "2024.0.0-ballot",
  "name": "MII_PR_MTB_RNA_Seq",
  "title": "MII PR MTB RNA Seq",
  "status": "draft",
  "publisher": "Medizininformatik Initiative",
  "contact": [
    {
      "telecom": [
        {
          "system": "url",
          "value": "https://www.medizininformatik-initiative.de"
        }
      ]
    }
  ],
  "description": "RNA Seq",
  "fhirVersion": "4.0.1",
  "kind": "resource",
  "abstract": false,
  "type": "Observation",
  "baseDefinition": "https://www.medizininformatik-initiative.de/fhir/ext/modul-molgen/StructureDefinition/variante",
  "derivation": "constraint",
  "differential": {
    "element": [
      {
        "id": "Observation.meta",
        "path": "Observation.meta",
        "mustSupport": true
      },
      {
        "id": "Observation.meta.profile",
        "path": "Observation.meta.profile",
        "mustSupport": true
      },
      {
        "id": "Observation.focus",
        "path": "Observation.focus",
        "type": [
          {
            "code": "Reference",
            "targetProfile": [
              "https://www.medizininformatik-initiative.de/fhir/ext/modul-onko/StructureDefinition/mii-pr-onko-diagnose-primaertumor",
              "https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-pr-mtb-diagnose-primaertumor"
            ]
          }
        ],
        "mustSupport": true
      },
      {
        "id": "Observation.value[x]",
        "path": "Observation.value[x]",
        "slicing": {
          "discriminator": [
            {
              "type": "type",
              "path": "$this"
            }
          ],
          "ordered": false,
          "rules": "open"
        }
      },
      {
        "id": "Observation.component:gene-studied",
        "path": "Observation.component",
        "sliceName": "gene-studied",
        "short": "Gen"
      },
      {
        "id": "Observation.component:variation-code",
        "path": "Observation.component",
        "sliceName": "variation-code",
        "short": "Entrez ID & Ensemble ID",
        "max": "2"
      },
      {
        "id": "Observation.component:transcript-id",
        "path": "Observation.component",
        "sliceName": "transcript-id",
        "short": "Transcript ID",
        "min": 0,
        "max": "1",
        "mustSupport": true
      },
      {
        "id": "Observation.component:transcript-id.value[x]",
        "path": "Observation.component.value[x]",
        "type": [
          {
            "code": "CodeableConcept"
          }
        ]
      },
      {
        "id": "Observation.component:transcripts-per-million",
        "path": "Observation.component",
        "sliceName": "transcripts-per-million",
        "short": "Transcripts per million",
        "min": 0,
        "max": "1",
        "mustSupport": true
      },
      {
        "id": "Observation.component:transcripts-per-million.value[x]",
        "path": "Observation.component.value[x]",
        "type": [
          {
            "code": "Ratio"
          }
        ]
      },
      {
        "id": "Observation.component:transcripts-per-million.value[x].denominator.value",
        "path": "Observation.component.value[x].denominator.value",
        "patternDecimal": 1000000
      },
      {
        "id": "Observation.component:tissue-corrected-expression",
        "path": "Observation.component",
        "sliceName": "tissue-corrected-expression",
        "short": "Tissue corrected expression",
        "min": 0,
        "max": "1",
        "mustSupport": true
      },
      {
        "id": "Observation.component:tissue-corrected-expression.value[x]",
        "path": "Observation.component.value[x]",
        "type": [
          {
            "code": "boolean"
          }
        ]
      },
      {
        "id": "Observation.component:raw-counts",
        "path": "Observation.component",
        "sliceName": "raw-counts",
        "short": "Raw counts",
        "min": 0,
        "max": "1",
        "mustSupport": true
      },
      {
        "id": "Observation.component:raw-counts.value[x]",
        "path": "Observation.component.value[x]",
        "type": [
          {
            "code": "Quantity"
          }
        ]
      },
      {
        "id": "Observation.component:library-size",
        "path": "Observation.component",
        "sliceName": "library-size",
        "short": "Library size",
        "min": 0,
        "max": "1",
        "mustSupport": true
      },
      {
        "id": "Observation.component:library-size.value[x]",
        "path": "Observation.component.value[x]",
        "type": [
          {
            "code": "Quantity"
          }
        ]
      },
      {
        "id": "Observation.component:cohort-ranking",
        "path": "Observation.component",
        "sliceName": "cohort-ranking",
        "short": "Cohort ranking",
        "min": 0,
        "max": "1",
        "mustSupport": true
      },
      {
        "id": "Observation.component:cohort-ranking.value[x]",
        "path": "Observation.component.value[x]",
        "type": [
          {
            "code": "Quantity"
          }
        ]
      }
    ]
  }
}