FHIR IG analytics| Package | us.nlm.vsac |
| Resource Type | ValueSet |
| Id | ValueSet-2.16.840.1.113762.1.4.1222.1580.json |
| FHIR Version | R4 |
| Source | https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1222.1580/expansion |
| URL | http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1222.1580 |
| Version | 20240509 |
| Status | active |
| Date | 2024-05-09T01:01:23-04:00 |
| Name | COVID19SARSCoV2SARSCoVInfluenzaVirusAAndBTests |
| Title | COVID 19 (SARS CoV 2), SARS CoV, Influenza virus A and B Tests |
| Realm | us |
| Authority | hl7 |
| Purpose | (Clinical Focus: This set of values contains laboratory observable panel codes for COVID-19 (SARS-CoV-2), SARS-CoV, and Influenza virus A and B Tests.),(Data Element Scope: The intent of this data element is to identify patients with a lab test performed on a source of blood, serum, or plasma for COVID-19 (SARS-CoV-2), SARS-CoV, and Influenza virus A and B Tests.),(Inclusion Criteria: COVID-19 (SARS-CoV-2), SARS-CoV, and Influenza virus A and B lab tests using the source of blood, serum, or plasma, coded in LOINC, using panel codes and test codes (individual laboratory observations) associated with these panel code(s).),(Exclusion Criteria: Does not include any codes or concepts which do not represent COVID-19 (SARS-CoV-2), SARS-CoV, and Influenza virus A and B tests as defined in the inclusion criteria.) |
No resources found
| CodeSystem | |
| loinc.org | LOINC codes used in this IG |
No narrative content found in resource
FHIR
FHIRsmith{
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"id": "2.16.840.1.113762.1.4.1222.1580",
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"valueDate": "2024-05-09"
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"url": "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1222.1580",
"identifier": [
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"version": "20240509",
"name": "COVID19SARSCoV2SARSCoVInfluenzaVirusAAndBTests",
"title": "COVID 19 (SARS CoV 2), SARS CoV, Influenza virus A and B Tests",
"status": "active",
"date": "2024-05-09T01:01:23-04:00",
"publisher": "HL7 Patient Care WG Steward",
"jurisdiction": [
{
"coding": [
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"code": "US"
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"purpose": "(Clinical Focus: This set of values contains laboratory observable panel codes for COVID-19 (SARS-CoV-2), SARS-CoV, and Influenza virus A and B Tests.),(Data Element Scope: The intent of this data element is to identify patients with a lab test performed on a source of blood, serum, or plasma for COVID-19 (SARS-CoV-2), SARS-CoV, and Influenza virus A and B Tests.),(Inclusion Criteria: COVID-19 (SARS-CoV-2), SARS-CoV, and Influenza virus A and B lab tests using the source of blood, serum, or plasma, coded in LOINC, using panel codes and test codes (individual laboratory observations) associated with these panel code(s).),(Exclusion Criteria: Does not include any codes or concepts which do not represent COVID-19 (SARS-CoV-2), SARS-CoV, and Influenza virus A and B tests as defined in the inclusion criteria.)",
"compose": {
"include": [
{
"system": "http://loinc.org",
"concept": [
{
"code": "100156-9",
"display": "SARS-CoV-2 (COVID-19) variant [Type] in Specimen by NAA with probe detection"
},
{
"code": "100157-7",
"display": "SARS-CoV-2 (COVID-19) lineage [Type] in Specimen by Sequencing"
},
{
"code": "100345-8",
"display": "Influenza virus A and B and SARS-CoV-2 (COVID-19) RNA panel - Specimen by NAA with probe detection"
},
{
"code": "101289-7",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Throat by NAA with non-probe detection"
},
{
"code": "101928-0",
"display": "SARS-CoV-2 Ag [Presence] in Nasopharynx by Immunofluorescence"
},
{
"code": "94306-8",
"display": "SARS-CoV-2 (COVID-19) RNA panel - Specimen by NAA with probe detection"
},
{
"code": "94307-6",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N1"
},
{
"code": "94308-4",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N2"
},
{
"code": "94309-2",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "94310-0",
"display": "SARS-related coronavirus N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N3"
},
{
"code": "94311-8",
"display": "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by Nucleic acid amplification using CDC primer-probe set N1"
},
{
"code": "94312-6",
"display": "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by Nucleic acid amplification using CDC primer-probe set N2"
},
{
"code": "94313-4",
"display": "SARS-related coronavirus N gene [Cycle Threshold #] in Specimen by Nucleic acid amplification using CDC primer-probe set N3"
},
{
"code": "94314-2",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Specimen by NAA with probe detection"
},
{
"code": "94315-9",
"display": "SARS-related coronavirus E gene [Presence] in Specimen by NAA with probe detection"
},
{
"code": "94316-7",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by NAA with probe detection"
},
{
"code": "94500-6",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94502-2",
"display": "SARS-related coronavirus RNA [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94503-0",
"display": "SARS-CoV-2 (COVID-19) Ab panel - Serum, Plasma or Blood by Rapid immunoassay"
},
{
"code": "94504-8",
"display": "SARS-CoV-2 (COVID-19) Ab panel - Serum or Plasma by Immunoassay"
},
{
"code": "94505-5",
"display": "SARS-CoV-2 (COVID-19) IgG Ab [Units/volume] in Serum or Plasma by Immunoassay"
},
{
"code": "94506-3",
"display": "SARS-CoV-2 (COVID-19) IgM Ab [Units/volume] in Serum or Plasma by Immunoassay"
},
{
"code": "94507-1",
"display": "SARS-CoV-2 (COVID-19) IgG Ab [Presence] in Serum, Plasma or Blood by Rapid immunoassay"
},
{
"code": "94508-9",
"display": "SARS-CoV-2 (COVID-19) IgM Ab [Presence] in Serum, Plasma or Blood by Rapid immunoassay"
},
{
"code": "94509-7",
"display": "SARS-related coronavirus E gene [Cycle Threshold #] in Specimen by NAA with probe detection"
},
{
"code": "94510-5",
"display": "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by NAA with probe detection"
},
{
"code": "94511-3",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Cycle Threshold #] in Specimen by NAA with probe detection"
},
{
"code": "94531-1",
"display": "SARS-CoV-2 (COVID-19) RNA panel - Respiratory system specimen by NAA with probe detection"
},
{
"code": "94532-9",
"display": "SARS-related coronavirus+MERS coronavirus RNA [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94533-7",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94534-5",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94547-7",
"display": "SARS-CoV-2 (COVID-19) IgG+IgM Ab [Presence] in Serum or Plasma by Immunoassay"
},
{
"code": "94558-4",
"display": "SARS-CoV-2 (COVID-19) Ag [Presence] in Respiratory system specimen by Rapid immunoassay"
},
{
"code": "94559-2",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94562-6",
"display": "SARS-CoV-2 (COVID-19) IgA Ab [Presence] in Serum or Plasma by Immunoassay"
},
{
"code": "94563-4",
"display": "SARS-CoV-2 (COVID-19) IgG Ab [Presence] in Serum or Plasma by Immunoassay"
},
{
"code": "94564-2",
"display": "SARS-CoV-2 (COVID-19) IgM Ab [Presence] in Serum or Plasma by Immunoassay"
},
{
"code": "94565-9",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with non-probe detection"
},
{
"code": "94639-2",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Specimen by NAA with probe detection"
},
{
"code": "94640-0",
"display": "SARS-CoV-2 (COVID-19) S gene [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94641-8",
"display": "SARS-CoV-2 (COVID-19) S gene [Presence] in Specimen by NAA with probe detection"
},
{
"code": "94642-6",
"display": "SARS-CoV-2 (COVID-19) S gene [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94643-4",
"display": "SARS-CoV-2 (COVID-19) S gene [Cycle Threshold #] in Specimen by NAA with probe detection"
},
{
"code": "94644-2",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94645-9",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Cycle Threshold #] in Specimen by NAA with probe detection"
},
{
"code": "94646-7",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94647-5",
"display": "SARS-related coronavirus RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "94660-8",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Serum or Plasma by NAA with probe detection"
},
{
"code": "94661-6",
"display": "SARS-CoV-2 (COVID-19) Ab [Interpretation] in Serum or Plasma"
},
{
"code": "94720-0",
"display": "SARS-CoV-2 (COVID-19) IgA Ab [Units/volume] in Serum or Plasma by Immunoassay"
},
{
"code": "94745-7",
"display": "SARS-CoV-2 (COVID-19) RNA [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94746-5",
"display": "SARS-CoV-2 (COVID-19) RNA [Cycle Threshold #] in Specimen by NAA with probe detection"
},
{
"code": "94756-4",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory system specimen by Nucleic acid amplification using CDC primer-probe set N1"
},
{
"code": "94757-2",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory system specimen by Nucleic acid amplification using CDC primer-probe set N2"
},
{
"code": "94758-0",
"display": "SARS-related coronavirus E gene [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94759-8",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection"
},
{
"code": "94760-6",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Nasopharynx by NAA with probe detection"
},
{
"code": "94761-4",
"display": "SARS-CoV-2 (COVID-19) IgG Ab [Presence] in DBS by Immunoassay"
},
{
"code": "94762-2",
"display": "SARS-CoV-2 (COVID-19) Ab [Presence] in Serum or Plasma by Immunoassay"
},
{
"code": "94763-0",
"display": "SARS-CoV-2 (COVID-19) [Presence] in Specimen by Organism specific culture"
},
{
"code": "94764-8",
"display": "SARS-CoV-2 (COVID-19) whole genome [Nucleotide sequence] in Isolate or Specimen by Sequencing"
},
{
"code": "94765-5",
"display": "SARS-related coronavirus E gene [Presence] in Serum or Plasma by NAA with probe detection"
},
{
"code": "94766-3",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Serum or Plasma by NAA with probe detection"
},
{
"code": "94767-1",
"display": "SARS-CoV-2 (COVID-19) S gene [Presence] in Serum or Plasma by NAA with probe detection"
},
{
"code": "94768-9",
"display": "SARS-CoV-2 (COVID-19) IgA Ab [Presence] in Serum, Plasma or Blood by Rapid immunoassay"
},
{
"code": "94769-7",
"display": "SARS-CoV-2 (COVID-19) Ab [Units/volume] in Serum or Plasma by Immunoassay"
},
{
"code": "94819-0",
"display": "SARS-CoV-2 (COVID-19) RNA [Log #/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "94822-4",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Saliva (oral fluid) by Sequencing"
},
{
"code": "94845-5",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Saliva (oral fluid) by NAA with probe detection"
},
{
"code": "95125-1",
"display": "SARS-CoV-2 (COVID-19) IgA+IgM [Presence] in Serum or Plasma by Immunoassay"
},
{
"code": "95209-3",
"display": "SARS-CoV+SARS-CoV-2 (COVID-19) Ag [Presence] in Respiratory system specimen by Rapid immunoassay"
},
{
"code": "95380-2",
"display": "Influenza virus A and B and SARS-CoV-2 (COVID-19) and SARS-related CoV RNA panel - Respiratory system specimen by NAA with probe detection"
},
{
"code": "95406-5",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Nose by NAA with probe detection"
},
{
"code": "95409-9",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Nose by NAA with probe detection"
},
{
"code": "95410-7",
"display": "SARS-CoV-2 (COVID-19) neutralizing antibody [Titer] in Serum by pVNT"
},
{
"code": "95411-5",
"display": "SARS-CoV-2 (COVID-19) neutralizing antibody [Presence] in Serum by pVNT"
},
{
"code": "95416-4",
"display": "SARS-CoV-2 (COVID-19) IgM Ab [Presence] in DBS by Immunoassay"
},
{
"code": "95422-2",
"display": "Influenza virus A and B and SARS-CoV-2 (COVID-19) RNA panel - Respiratory system specimen by NAA with probe detection"
},
{
"code": "95423-0",
"display": "Influenza virus A and B and SARS-CoV-2 (COVID-19) identified in Respiratory system specimen by NAA with probe detection"
},
{
"code": "95424-8",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by Sequencing"
},
{
"code": "95425-5",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Saliva (oral fluid) by NAA with probe detection"
},
{
"code": "95427-1",
"display": "SARS-CoV-2 (COVID-19) IgA Ab [Titer] in Serum or Plasma by Immunofluorescence"
},
{
"code": "95428-9",
"display": "SARS-CoV-2 (COVID-19) IgM Ab [Titer] in Serum or Plasma by Immunofluorescence"
},
{
"code": "95429-7",
"display": "SARS-CoV-2 (COVID-19) IgG Ab [Titer] in Serum or Plasma by Immunofluorescence"
},
{
"code": "95521-1",
"display": "SARS-CoV-2 (COVID-19) N gene [#/volume] (viral load) in Respiratory system specimen by NAA with probe detection"
},
{
"code": "95522-9",
"display": "SARS-CoV-2 (COVID-19) N gene [Log #/volume] (viral load) in Respiratory system specimen by NAA with probe detection"
},
{
"code": "95542-7",
"display": "SARS-CoV-2 (COVID-19) Ab [Presence] in Serum, Plasma or Blood by Rapid immunoassay"
},
{
"code": "95608-6",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with non-probe detection"
},
{
"code": "95609-4",
"display": "SARS-CoV-2 (COVID-19) S gene [Presence] in Respiratory system specimen by Sequencing"
},
{
"code": "95823-1",
"display": "SARS-related coronavirus E gene [Presence] in Saliva (oral fluid) by NAA with probe detection"
},
{
"code": "95824-9",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Saliva (oral fluid) by NAA with probe detection"
},
{
"code": "95825-6",
"display": "SARS-CoV-2 (COVID-19) Ab [Presence] in DBS by Immunoassay"
},
{
"code": "95826-4",
"display": "SARS-CoV-2 (COVID-19) RNA panel - Saliva (oral fluid) by NAA with probe detection"
},
{
"code": "95941-1",
"display": "Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection"
},
{
"code": "95942-9",
"display": "Influenza virus A and B and SARS-CoV+SARS-CoV-2 (COVID-19) Ag panel - Upper respiratory specimen by Rapid immunoassay"
},
{
"code": "95970-0",
"display": "SARS-CoV-2 (COVID-19) specific TCRB gene rearrangements [Presence] in Blood by Sequencing"
},
{
"code": "95971-8",
"display": "SARS-CoV-2 stimulated gamma interferon [Presence] in Blood"
},
{
"code": "95972-6",
"display": "SARS-CoV-2 stimulated gamma interferon release by T-cells [Units/volume] corrected for background in Blood"
},
{
"code": "95973-4",
"display": "SARS-CoV-2 stimulated gamma interferon release by T-cells [Units/volume] in Blood"
},
{
"code": "95974-2",
"display": "SARS-CoV-2 stimulated gamma interferon panel - Blood"
},
{
"code": "96091-4",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Saliva (oral fluid) by NAA with probe detection"
},
{
"code": "96094-8",
"display": "SARS-CoV-2 (COVID-19) and SARS-related CoV RNA panel - Respiratory system specimen by NAA with probe detection"
},
{
"code": "96118-5",
"display": "SARS-CoV-2 (COVID-19) Ab panel - DBS by Immunoassay"
},
{
"code": "96119-3",
"display": "SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Immunoassay"
},
{
"code": "96120-1",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Lower respiratory specimen by NAA with probe detection"
},
{
"code": "96121-9",
"display": "SARS-related coronavirus E gene [Presence] in Lower respiratory specimen by NAA with probe detection"
},
{
"code": "96122-7",
"display": "SARS-related coronavirus E gene [Presence] in Upper respiratory specimen by NAA with probe detection"
},
{
"code": "96123-5",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Upper respiratory specimen by NAA with probe detection"
},
{
"code": "96448-6",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Saliva (oral fluid) by Nucleic acid amplification using CDC primer-probe set N1"
},
{
"code": "96603-6",
"display": "SARS-CoV-2 (COVID-19) S protein RBD neutralizing antibody [Presence] in Serum or Plasma by sVNT"
},
{
"code": "96741-4",
"display": "SARS-CoV-2 (COVID-19) variant [Type] in Specimen by Sequencing"
},
{
"code": "96742-2",
"display": "SARS-CoV-2 (COVID-19) IgG Ab [Mass/volume] in Serum or Plasma by Immunoassay"
},
{
"code": "96751-3",
"display": "SARS-CoV-2 (COVID-19) S gene mutation detected [Identifier] in Specimen by Molecular genetics method"
},
{
"code": "96752-1",
"display": "SARS-CoV-2 (COVID-19) S gene mutation [Presence] in Specimen by Molecular genetics method"
},
{
"code": "96755-4",
"display": "SARS-CoV-2 (COVID-19) variant interpretation in Specimen Narrative"
},
{
"code": "96756-2",
"display": "SARS-CoV-2 (COVID-19) S gene codon N501= [Presence] in Specimen by Molecular genetics method"
},
{
"code": "96757-0",
"display": "SARS-CoV-2 (COVID-19) S gene codon N501Y [Presence] in Specimen by Molecular genetics method"
},
{
"code": "96763-8",
"display": "SARS-CoV-2 (COVID-19) E gene [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "96764-6",
"display": "SARS-CoV-2 (COVID-19) E gene [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "96765-3",
"display": "SARS-CoV-2 (COVID-19) S gene [Presence] in Saliva (oral fluid) by NAA with probe detection"
},
{
"code": "96797-6",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Oropharyngeal wash by NAA with probe detection"
},
{
"code": "96829-7",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Specimen from Donor by NAA with probe detection"
},
{
"code": "96894-1",
"display": "SARS-CoV-2 (COVID-19) sequencing and identification panel - Specimen by Molecular genetics method"
},
{
"code": "96895-8",
"display": "SARS-CoV-2 (COVID-19) lineage [Identifier] in Specimen by Molecular genetics method"
},
{
"code": "96896-6",
"display": "SARS-CoV-2 (COVID-19) clade [Type] in Specimen by Molecular genetics method"
},
{
"code": "96897-4",
"display": "SARS-CoV-2 (COVID-19) RNA panel - Oropharyngeal wash by NAA with probe detection"
},
{
"code": "96898-2",
"display": "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Oropharyngeal wash by NAA with probe detection"
},
{
"code": "96899-0",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Cycle Threshold #] in Oropharyngeal wash by NAA with probe detection"
},
{
"code": "96900-6",
"display": "SARS-CoV-2 (COVID-19) S gene [Cycle Threshold #] in Oropharyngeal wash by NAA with probe detection"
},
{
"code": "96957-6",
"display": "SARS-CoV-2 (COVID-19) M gene [Presence] in Upper respiratory specimen by NAA with probe detection"
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