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Packageus.nlm.vsac
Resource TypeValueSet
IdValueSet-2.16.840.1.113762.1.4.1146.840.json
FHIR VersionR4
Sourcehttps://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.840/expansion
URLhttp://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.840
Version20250621
Statusactive
Date2025-06-21T01:03:03-04:00
NameTuberculosisTestsForMycobacteriumTuberculosisByCultureAndIdentificationMethod
TitleTuberculosis (Tests for Mycobacterium tuberculosis by Culture and Identification Method)
Realmus
Authorityhl7
DescriptionNo Mycobacterium tuberculosis organism specific culture codes found
Purpose(Clinical Focus: This set of values contains codes for laboratory test names associated with detecting the presence of Mycobacterium tuberculosis in culture),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: component: Mycobacterium tuberculosis isolate / culture; LOINC search: "Mycobacterium tuberculosis (culture or isolate) -avium -leprae -sp -preliminary -device -dialysis -panel -interpretation -complex"),(Exclusion Criteria: none)

Resources that use this resource

No resources found


Resources that this resource uses

CodeSystem
loinc.orgLOINC codes used in this IG

Narrative

No narrative content found in resource


Source1

{
  "resourceType": "ValueSet",
  "id": "2.16.840.1.113762.1.4.1146.840",
  "meta": {
    "versionId": "33",
    "lastUpdated": "2025-06-21T01:03:03.000-04:00",
    "profile": [
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  },
  "extension": [
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      "url": "http://hl7.org/fhir/StructureDefinition/valueset-author",
      "valueContactDetail": {
        "name": "CSTE Author"
      }
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-keyWord",
      "valueString": "G_Respiratory,Trigger,Tuberculosis"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate",
      "valueDate": "2025-06-21"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate",
      "valueDate": "2025-06-21"
    }
  ],
  "url": "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.840",
  "identifier": [
    {
      "system": "urn:ietf:rfc:3986",
      "value": "urn:oid:2.16.840.1.113762.1.4.1146.840"
    }
  ],
  "version": "20250621",
  "name": "TuberculosisTestsForMycobacteriumTuberculosisByCultureAndIdentificationMethod",
  "title": "Tuberculosis (Tests for Mycobacterium tuberculosis by Culture and Identification Method)",
  "status": "active",
  "date": "2025-06-21T01:03:03-04:00",
  "publisher": "CSTE Steward",
  "description": "No Mycobacterium tuberculosis organism specific culture codes found",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "urn:iso:std:iso:3166",
          "code": "US"
        }
      ]
    }
  ],
  "purpose": "(Clinical Focus: This set of values contains codes for laboratory test names associated with detecting the presence of Mycobacterium tuberculosis in culture),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: component: Mycobacterium tuberculosis isolate / culture;  LOINC search: \"Mycobacterium tuberculosis (culture or isolate) -avium -leprae -sp  -preliminary -device -dialysis -panel -interpretation -complex\"),(Exclusion Criteria: none)",
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        "concept": [
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            "code": "105755-3",
            "display": "M. tuberculosis rrs gene kanamycin high level resistance mutation [Identifier] in Isolate or Specimen by Molecular genetics method Nominal"
          },
          {
            "code": "105756-1",
            "display": "Mycobacterium tuberculosis eis gene mutations [Identifier] in Isolate or Specimen by Molecular genetics method Nominal"
          },
          {
            "code": "105757-9",
            "display": "Mycobacterium tuberculosis embC-embA promoter region gene ethambutol resistance mutation [Identifier] in Isolate or Specimen by Molecular genetics method Nominal"
          },
          {
            "code": "105758-7",
            "display": "Mycobacterium tuberculosis mabA gene ethionamide resistance mutation [Presence] in Isolate or Specimen by Molecular genetics method"
          },
          {
            "code": "105759-5",
            "display": "Mycobacterium tuberculosis mabA gene INH high level resistance mutation [Identifier] in Isolate or Specimen by Molecular genetics method Nominal"
          },
          {
            "code": "105760-3",
            "display": "Mycobacterium tuberculosis mabA promoter region gene ethionamide resistance mutation [Presence] in Isolate or Specimen by Molecular genetics method"
          },
          {
            "code": "105761-1",
            "display": "Mycobacterium tuberculosis mabA promoter region gene INH high level resistance mutation [Identifier] in Isolate or Specimen by Molecular genetics method Nominal"
          },
          {
            "code": "105762-9",
            "display": "Mycobacterium tuberculosis oxyR-ahpC promoter region gene INH high level resistance mutation [Identifier] in Isolate or Specimen by Molecular genetics method Nominal"
          },
          {
            "code": "105763-7",
            "display": "Mycobacterium tuberculosis pncA promoter region gene pyrazinamide resistance mutation [Identifier] in Isolate or Specimen by Molecular genetics method Nominal"
          },
          {
            "code": "35352-4",
            "display": "Mycobacterium tuberculosis genotype [Identifier] in Isolate"
          },
          {
            "code": "42717-9",
            "display": "Mycobacterium tuberculosis complex genotype [Identifier] in Isolate"
          },
          {
            "code": "46244-0",
            "display": "Mycobacterium tuberculosis complex rpoB gene rifAMPin resistance mutation identified by Molecular method"
          },
          {
            "code": "46245-7",
            "display": "Mycobacterium tuberculosis pncA gene pyrazinamide resistance mutation [Identifier] by Molecular method"
          },
          {
            "code": "46246-5",
            "display": "Mycobacterium tuberculosis katG gene isoniazid high level resistance mutation [Identifier] by Molecular method"
          },
          {
            "code": "46247-3",
            "display": "Mycobacterium tuberculosis embB gene ethambutol resistance mutation [Identifier] by Molecular method"
          },
          {
            "code": "48175-4",
            "display": "Mycobacterium tuberculosis katG + inhA gene isoniazid resistance mutation [Presence] by Molecular method"
          },
          {
            "code": "63072-3",
            "display": "Mycobacterium tuberculosis inhA gene isoniazid low level resistance mutation [Presence] by Molecular method"
          },
          {
            "code": "72276-9",
            "display": "Mycobacterium tuberculosis gyrA gene fluoroquinolone resistance mutation [Presence] by Molecular method"
          },
          {
            "code": "72864-2",
            "display": "Mycobacterium tuberculosis rpsL+rrs genes aminoglycoside resistance mutation [Presence] by Molecular method"
          },
          {
            "code": "72865-9",
            "display": "Mycobacterium tuberculosis ethB gene ethionamide resistance mutation [Presence] by Molecular method"
          },
          {
            "code": "72866-7",
            "display": "Mycobacterium tuberculosis ethA gene ethionamide resistance mutation [Presence] by Molecular method"
          },
          {
            "code": "72867-5",
            "display": "Mycobacterium tuberculosis gyrB gene fluoroquinolone resistance mutation [Presence] by Molecular method"
          },
          {
            "code": "83066-1",
            "display": "Mycobacterium tuberculosis complex immunogenic protein MPB64 [Presence] in Isolate by Immunoassay"
          },
          {
            "code": "88874-3",
            "display": "Mycobacterium tuberculosis complex DNA [Presence] in Isolate or Specimen by Molecular genetics method"
          },
          {
            "code": "89372-7",
            "display": "Mycobacterium tuberculosis complex rpoB gene rifAMPin resistance mutation [Presence] by Molecular method"
          },
          {
            "code": "94576-6",
            "display": "Mycobacterium tuberculosis complex species identified in Isolate by NAA with probe detection"
          }
        ]
      }
    ]
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    "timestamp": "2025-11-24T14:02:22-05:00",
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        "version": "2.80",
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      },
      {
        "system": "http://loinc.org",
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        "code": "105756-1",
        "display": "Mycobacterium tuberculosis eis gene mutations [Identifier] in Isolate or Specimen by Molecular genetics method Nominal"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
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        "display": "Mycobacterium tuberculosis embC-embA promoter region gene ethambutol resistance mutation [Identifier] in Isolate or Specimen by Molecular genetics method Nominal"
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      },
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      },
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        "display": "Mycobacterium tuberculosis mabA promoter region gene ethionamide resistance mutation [Presence] in Isolate or Specimen by Molecular genetics method"
      },
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        "version": "2.80",
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      },
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        "display": "Mycobacterium tuberculosis oxyR-ahpC promoter region gene INH high level resistance mutation [Identifier] in Isolate or Specimen by Molecular genetics method Nominal"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
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        "display": "Mycobacterium tuberculosis pncA promoter region gene pyrazinamide resistance mutation [Identifier] in Isolate or Specimen by Molecular genetics method Nominal"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "35352-4",
        "display": "Mycobacterium tuberculosis genotype [Identifier] in Isolate"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "42717-9",
        "display": "Mycobacterium tuberculosis complex genotype [Identifier] in Isolate"
      },
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        "system": "http://loinc.org",
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        "display": "Mycobacterium tuberculosis complex rpoB gene rifAMPin resistance mutation identified by Molecular method"
      },
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        "code": "46245-7",
        "display": "Mycobacterium tuberculosis pncA gene pyrazinamide resistance mutation [Identifier] by Molecular method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "46246-5",
        "display": "Mycobacterium tuberculosis katG gene isoniazid high level resistance mutation [Identifier] by Molecular method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "46247-3",
        "display": "Mycobacterium tuberculosis embB gene ethambutol resistance mutation [Identifier] by Molecular method"
      },
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        "system": "http://loinc.org",
        "version": "2.80",
        "code": "48175-4",
        "display": "Mycobacterium tuberculosis katG + inhA gene isoniazid resistance mutation [Presence] by Molecular method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "63072-3",
        "display": "Mycobacterium tuberculosis inhA gene isoniazid low level resistance mutation [Presence] by Molecular method"
      },
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        "system": "http://loinc.org",
        "version": "2.80",
        "code": "72276-9",
        "display": "Mycobacterium tuberculosis gyrA gene fluoroquinolone resistance mutation [Presence] by Molecular method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "72864-2",
        "display": "Mycobacterium tuberculosis rpsL+rrs genes aminoglycoside resistance mutation [Presence] by Molecular method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "72865-9",
        "display": "Mycobacterium tuberculosis ethB gene ethionamide resistance mutation [Presence] by Molecular method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "72866-7",
        "display": "Mycobacterium tuberculosis ethA gene ethionamide resistance mutation [Presence] by Molecular method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "72867-5",
        "display": "Mycobacterium tuberculosis gyrB gene fluoroquinolone resistance mutation [Presence] by Molecular method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "83066-1",
        "display": "Mycobacterium tuberculosis complex immunogenic protein MPB64 [Presence] in Isolate by Immunoassay"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "88874-3",
        "display": "Mycobacterium tuberculosis complex DNA [Presence] in Isolate or Specimen by Molecular genetics method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "89372-7",
        "display": "Mycobacterium tuberculosis complex rpoB gene rifAMPin resistance mutation [Presence] by Molecular method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "94576-6",
        "display": "Mycobacterium tuberculosis complex species identified in Isolate by NAA with probe detection"
      }
    ]
  }
}