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Packageus.nlm.vsac
Resource TypeValueSet
IdValueSet-2.16.840.1.113762.1.4.1146.58.json
FHIR VersionR4
Sourcehttps://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.58/expansion
URLhttp://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.58
Version20230602
Statusactive
Date2023-06-02T01:03:51-04:00
NamePertussisTestsForBordetellaPertussisNucleicAcid
TitlePertussis (Tests for Bordetella pertussis Nucleic Acid)
Realmus
Authorityhl7
Purpose(Clinical Focus: This set of values contains codes for laboratory test names associated with detecting the presence of Bordetella pertussis nucleic acid),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: component: pertussis nucleic acid; VSAC query: Pertussis probe/non-probe; LOINC search: "bordetella pertussis nucleic acid -panel"),(Exclusion Criteria: panel tests)

Resources that use this resource

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Resources that this resource uses

CodeSystem
loinc.orgLOINC codes used in this IG

Narrative

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Source1

{
  "resourceType": "ValueSet",
  "id": "2.16.840.1.113762.1.4.1146.58",
  "meta": {
    "versionId": "55",
    "lastUpdated": "2023-12-21T17:43:03.000-05:00",
    "profile": [
      "http://hl7.org/fhir/StructureDefinition/shareablevalueset",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/computable-valueset-cqfm",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/publishable-valueset-cqfm"
    ]
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-author",
      "valueContactDetail": {
        "name": "CSTE Author"
      }
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-keyWord",
      "valueString": "G_Vaccine,Pertussis,Trigger"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate",
      "valueDate": "2024-06-05"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate",
      "valueDate": "2023-06-02"
    }
  ],
  "url": "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.58",
  "identifier": [
    {
      "system": "urn:ietf:rfc:3986",
      "value": "urn:oid:2.16.840.1.113762.1.4.1146.58"
    }
  ],
  "version": "20230602",
  "name": "PertussisTestsForBordetellaPertussisNucleicAcid",
  "title": "Pertussis (Tests for Bordetella pertussis Nucleic Acid)",
  "status": "active",
  "date": "2023-06-02T01:03:51-04:00",
  "publisher": "CSTE Steward",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "urn:iso:std:iso:3166",
          "code": "US"
        }
      ]
    }
  ],
  "purpose": "(Clinical Focus: This set of values contains codes for laboratory test names associated with detecting the presence of Bordetella pertussis nucleic acid),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: component: pertussis nucleic acid;  \nVSAC query: Pertussis probe/non-probe;   \nLOINC search: \"bordetella pertussis nucleic acid -panel\"),(Exclusion Criteria: panel tests)",
  "compose": {
    "include": [
      {
        "system": "http://loinc.org",
        "concept": [
          {
            "code": "101284-8",
            "display": "Bordetella pertussis DNA [Presence] in Nasopharynx by NAA with non-probe detection"
          },
          {
            "code": "23826-1",
            "display": "Bordetella pertussis DNA [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code": "43913-3",
            "display": "Bordetella pertussis DNA [Presence] in Nasopharynx by NAA with probe detection"
          },
          {
            "code": "80600-0",
            "display": "Bordetella pertussis.pertussis toxin promoter region [Presence] in Nasopharynx by NAA with probe detection"
          },
          {
            "code": "80601-8",
            "display": "Bordetella pertussis+parapertussis+bronchiseptica gidA gene [Presence] in Nasopharynx by NAA with probe detection"
          },
          {
            "code": "82179-3",
            "display": "Bordetella pertussis.pertussis toxin promoter region [Presence] in Nasopharynx by NAA with non-probe detection"
          },
          {
            "code": "85360-6",
            "display": "Bordetella pertussis+bronchiseptica+holmesii IS481 DNA [Presence] in Nasopharynx by NAA with non-probe detection"
          },
          {
            "code": "85799-5",
            "display": "Bordetella pertussis+bronchiseptica+holmesii IS481 DNA [Cycle Threshold #] in Specimen by NAA with probe detection"
          },
          {
            "code": "86325-8",
            "display": "Bordetella pertussis+parapertussis ptxS1 gene [Cycle Threshold #] in Specimen by NAA with probe detection"
          },
          {
            "code": "91815-1",
            "display": "Bordetella pertussis DNA [Presence] in Upper respiratory specimen by NAA with probe detection"
          },
          {
            "code": "91869-8",
            "display": "Bordetella pertussis DNA [Presence] in Throat by NAA with probe detection"
          },
          {
            "code": "92128-8",
            "display": "Bordetella pertussis DNA [Presence] in Respiratory specimen by NAA with probe detection"
          },
          {
            "code": "92857-2",
            "display": "Bordetella pertussis+bronchiseptica+holmesii IS481 DNA [Presence] in Lower respiratory specimen by NAA with probe detection"
          },
          {
            "code": "92858-0",
            "display": "Bordetella pertussis+bronchiseptica+holmesii IS481 DNA [Presence] in Upper respiratory specimen by NAA with probe detection"
          },
          {
            "code": "94365-4",
            "display": "Bordetella pertussis DNA [Presence] in Lower respiratory specimen by NAA with probe detection"
          },
          {
            "code": "94392-8",
            "display": "Bordetella pertussis+parapertussis+bronchiseptica gidA gene [Presence] in Lower respiratory specimen by NAA with probe detection"
          },
          {
            "code": "94478-5",
            "display": "Bordetella pertussis.pertussis toxin promoter region [Presence] in Lower respiratory specimen by NAA with non-probe detection"
          },
          {
            "code": "96962-6",
            "display": "Bordetella pertussis.pertussis toxin promoter region [Presence] in Lower respiratory specimen by NAA with probe detection"
          }
        ]
      }
    ]
  },
  "expansion": {
    "identifier": "urn:uuid:cf0ec390-63f9-4378-8fb7-0b36fcee5af2",
    "timestamp": "2025-05-23T18:52:12-04:00",
    "total": 18,
    "contains": [
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "101284-8",
        "display": "Bordetella pertussis DNA [Presence] in Nasopharynx by NAA with non-probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "23826-1",
        "display": "Bordetella pertussis DNA [Presence] in Specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "43913-3",
        "display": "Bordetella pertussis DNA [Presence] in Nasopharynx by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "80600-0",
        "display": "Bordetella pertussis.pertussis toxin promoter region [Presence] in Nasopharynx by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "80601-8",
        "display": "Bordetella pertussis+parapertussis+bronchiseptica gidA gene [Presence] in Nasopharynx by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "82179-3",
        "display": "Bordetella pertussis.pertussis toxin promoter region [Presence] in Nasopharynx by NAA with non-probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "85360-6",
        "display": "Bordetella pertussis+bronchiseptica+holmesii IS481 DNA [Presence] in Nasopharynx by NAA with non-probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "85799-5",
        "display": "Bordetella pertussis+bronchiseptica+holmesii IS481 DNA [Cycle Threshold #] in Specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "86325-8",
        "display": "Bordetella pertussis+parapertussis ptxS1 gene [Cycle Threshold #] in Specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "91815-1",
        "display": "Bordetella pertussis DNA [Presence] in Upper respiratory specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "91869-8",
        "display": "Bordetella pertussis DNA [Presence] in Throat by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "92128-8",
        "display": "Bordetella pertussis DNA [Presence] in Respiratory system specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "92857-2",
        "display": "Bordetella pertussis+bronchiseptica+holmesii IS481 DNA [Presence] in Lower respiratory specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "92858-0",
        "display": "Bordetella pertussis+bronchiseptica+holmesii IS481 DNA [Presence] in Upper respiratory specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "94365-4",
        "display": "Bordetella pertussis DNA [Presence] in Lower respiratory specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "94392-8",
        "display": "Bordetella pertussis+parapertussis+bronchiseptica gidA gene [Presence] in Lower respiratory specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "94478-5",
        "display": "Bordetella pertussis.pertussis toxin promoter region [Presence] in Lower respiratory specimen by NAA with non-probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "96962-6",
        "display": "Bordetella pertussis.pertussis toxin promoter region [Presence] in Lower respiratory specimen by NAA with probe detection"
      }
    ]
  }
}