FHIRsmith: ValueSet/ValueSet-2.16.840.1.113762.1.4.1146.333.json

FHIR IG analytics

Package	us.nlm.vsac
Resource Type	ValueSet
Id	ValueSet-2.16.840.1.113762.1.4.1146.333.json
FHIR Version	R4
Source	https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.333/expansion
URL	http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.333
Version	20250218
Status	active
Date	2025-02-18T01:09:31-05:00
Name	ShigellosisOrganismOrSubstanceInLabResults
Title	Shigellosis (Organism or Substance in Lab Results)
Realm	us
Authority	hl7
Purpose	(Clinical Focus: This set of values contains organisms or substances relevant for reporting Shigellosis),(Data Element Scope: Organism names or substances reported in laboratory results),(Inclusion Criteria: VSAC query: Shigella (organism); Enteroinvasive Escherichia coli (organism); Shigella and Escherichia coli substances (nucleic acid and antigen) and positive finding; Root1 children included = All; Added leaf concepts: YES),(Exclusion Criteria: none)
Resources that use this resource

No resources found
Resources that this resource uses

CodeSystem
sct	SNOMED codes used in this IG
Narrative

No narrative content found in resource
Source1

{
  "resourceType": "ValueSet",
  "id": "2.16.840.1.113762.1.4.1146.333",
  "meta": {
    "versionId": "51",
    "lastUpdated": "2025-02-18T01:09:30.000-05:00",
    "profile": [
      "http://hl7.org/fhir/StructureDefinition/shareablevalueset",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/computable-valueset-cqfm",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/publishable-valueset-cqfm"
    ]
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-author",
      "valueContactDetail": {
        "name": "CSTE Author"
      }
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-keyWord",
      "valueString": "G_Enteric,Shigella,Trigger"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate",
      "valueDate": "2025-02-18"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate",
      "valueDate": "2025-02-18"
    }
  ],
  "url": "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.333",
  "identifier": [
    {
      "system": "urn:ietf:rfc:3986",
      "value": "urn:oid:2.16.840.1.113762.1.4.1146.333"
    }
  ],
  "version": "20250218",
  "name": "ShigellosisOrganismOrSubstanceInLabResults",
  "title": "Shigellosis (Organism or Substance in Lab Results)",
  "status": "active",
  "date": "2025-02-18T01:09:31-05:00",
  "publisher": "CSTE Steward",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "urn:iso:std:iso:3166",
          "code": "US"
        }
      ]
    }
  ],
  "purpose": "(Clinical Focus: This set of values contains organisms or substances relevant for reporting Shigellosis),(Data Element Scope: Organism names or substances reported in laboratory results),(Inclusion Criteria: VSAC query: Shigella (organism); \nEnteroinvasive Escherichia coli (organism);  \nShigella and Escherichia coli substances (nucleic acid and antigen) and positive finding;\n\nRoot1 children included = All; \nAdded leaf concepts: YES),(Exclusion Criteria: none)",
  "compose": {
    "include": [
      {
        "system": "http://snomed.info/sct",
        "concept": [
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            "display": "AmpC beta-lactamase producing Shigella (organism)"
          },
          {
            "code": "1108401000112101",
            "display": "Extended spectrum beta-lactamase producing Shigella (organism)"
          },
          {
            "code": "121037005",
            "display": "Antigen of Shigella (substance)"
          },
          {
            "code": "121038000",
            "display": "Antigen of Shigella boydii (substance)"
          },
          {
            "code": "121039008",
            "display": "Antigen of Shigella dysenteriae (substance)"
          },
          {
            "code": "121040005",
            "display": "Antigen of Shigella flexneri (substance)"
          },
          {
            "code": "121041009",
            "display": "Antigen of Shigella sonnei (substance)"
          },
          {
            "code": "124995002",
            "display": "Shigella dysenteriae, serovar 1 (organism)"
          },
          {
            "code": "124996001",
            "display": "Shigella dysenteriae, serovar 2 (organism)"
          },
          {
            "code": "124997005",
            "display": "Shigella dysenteriae, serovar 3 (organism)"
          },
          {
            "code": "124998000",
            "display": "Shigella dysenteriae, serovar 4 (organism)"
          },
          {
            "code": "124999008",
            "display": "Shigella dysenteriae, serovar 5 (organism)"
          },
          {
            "code": "125000008",
            "display": "Shigella dysenteriae, serovar 6 (organism)"
          },
          {
            "code": "125001007",
            "display": "Shigella dysenteriae, serovar 7 (organism)"
          },
          {
            "code": "125002000",
            "display": "Shigella dysenteriae, serovar 8 (organism)"
          },
          {
            "code": "125003005",
            "display": "Shigella dysenteriae, serovar 9 (organism)"
          },
          {
            "code": "125004004",
            "display": "Shigella dysenteriae, serovar 10 (organism)"
          },
          {
            "code": "125005003",
            "display": "Shigella flexneri, serovar 1 (organism)"
          },
          {
            "code": "125006002",
            "display": "Shigella flexneri, serovar 1a (organism)"
          },
          {
            "code": "125007006",
            "display": "Shigella flexneri, serovar 1b (organism)"
          },
          {
            "code": "125008001",
            "display": "Shigella flexneri, serovar 2 (organism)"
          },
          {
            "code": "125009009",
            "display": "Shigella flexneri, serovar 2a (organism)"
          },
          {
            "code": "125010004",
            "display": "Shigella flexneri, serovar 2b (organism)"
          },
          {
            "code": "125011000",
            "display": "Shigella flexneri, serovar 3 (organism)"
          },
          {
            "code": "125012007",
            "display": "Shigella flexneri, serovar 3a (organism)"
          },
          {
            "code": "125013002",
            "display": "Shigella flexneri, serovar 3b (organism)"
          },
          {
            "code": "125014008",
            "display": "Shigella flexneri, serovar 3c (organism)"
          },
          {
            "code": "125015009",
            "display": "Shigella flexneri, serovar 4 (organism)"
          },
          {
            "code": "125016005",
            "display": "Shigella flexneri, serovar 4a (organism)"
          },
          {
            "code": "125017001",
            "display": "Shigella flexneri, serovar 4b (organism)"
          },
          {
            "code": "125018006",
            "display": "Shigella flexneri, serovar 5 (organism)"
          },
          {
            "code": "125019003",
            "display": "Shigella flexneri, serovar 6 (organism)"
          },
          {
            "code": "125020009",
            "display": "Shigella flexneri, serovar X (organism)"
          },
          {
            "code": "125021008",
            "display": "Shigella flexneri, serovar Y (organism)"
          },
          {
            "code": "125022001",
            "display": "Shigella boydii, serovar 1 (organism)"
          },
          {
            "code": "125023006",
            "display": "Shigella boydii, serovar 2 (organism)"
          },
          {
            "code": "125024000",
            "display": "Shigella boydii, serovar 3 (organism)"
          },
          {
            "code": "125025004",
            "display": "Shigella boydii, serovar 4 (organism)"
          },
          {
            "code": "125026003",
            "display": "Shigella boydii, serovar 5 (organism)"
          },
          {
            "code": "125027007",
            "display": "Shigella boydii, serovar 6 (organism)"
          },
          {
            "code": "125028002",
            "display": "Shigella boydii, serovar 7 (organism)"
          },
          {
            "code": "125029005",
            "display": "Shigella boydii, serovar 8 (organism)"
          },
          {
            "code": "125030000",
            "display": "Shigella boydii, serovar 9 (organism)"
          },
          {
            "code": "125031001",
            "display": "Shigella boydii, serovar 10 (organism)"
          },
          {
            "code": "125032008",
            "display": "Shigella boydii, serovar 11 (organism)"
          },
          {
            "code": "125033003",
            "display": "Shigella boydii, serovar 12 (organism)"
          },
          {
            "code": "125034009",
            "display": "Shigella boydii, serovar 13 (organism)"
          },
          {
            "code": "125035005",
            "display": "Shigella boydii, serovar 14 (organism)"
          },
          {
            "code": "125036006",
            "display": "Shigella boydii, serovar 15 (organism)"
          },
          {
            "code": "133131000112102",
            "display": "Extended spectrum beta-lactamase producing Shigella flexneri serovar 2a (organism)"
          },
          {
            "code": "406478008",
            "display": "Provisional shigella 3065-93 (organism)"
          },
          {
            "code": "406479000",
            "display": "Shigella dysenteriae strain 96-3162 (organism)"
          },
          {
            "code": "406480002",
            "display": "Shigella flexneri provisional strain 88-893 (organism)"
          },
          {
            "code": "406481003",
            "display": "Shigella flexneri strain 89-141 (organism)"
          },
          {
            "code": "406482005",
            "display": "Shigella dysenteriae strain 93-119 (organism)"
          },
          {
            "code": "406483000",
            "display": "Shigella dysenteriae strain 204/96 (organism)"
          },
          {
            "code": "406484006",
            "display": "Shigella dysenteriae strain 96-265 (organism)"
          },
          {
            "code": "406485007",
            "display": "Provisional shigella E28938 (organism)"
          },
          {
            "code": "406486008",
            "display": "Shigella dysenteriae strain E670/74 (organism)"
          },
          {
            "code": "406487004",
            "display": "Shigella flexneri serovar 1c strain Y394 (organism)"
          },
          {
            "code": "406488009",
            "display": "Shigella boydii 16 (organism)"
          },
          {
            "code": "406489001",
            "display": "Shigella boydii 17 (organism)"
          },
          {
            "code": "406490005",
            "display": "Shigella boydii 18 (organism)"
          },
          {
            "code": "406491009",
            "display": "Shigella boydii serotype 19 (organism)"
          },
          {
            "code": "406492002",
            "display": "Shigella boydii serotype 20 (organism)"
          },
          {
            "code": "406493007",
            "display": "Shigella boydii serotype undetermined (Subgroup C) (organism)"
          },
          {
            "code": "406494001",
            "display": "Shigella dysenteriae 11 (organism)"
          },
          {
            "code": "406495000",
            "display": "Shigella dysenteriae 12 (organism)"
          },
          {
            "code": "406496004",
            "display": "Shigella dysenteriae 13 (organism)"
          },
          {
            "code": "406497008",
            "display": "Shigella dysenteriae 15 (organism)"
          },
          {
            "code": "406498003",
            "display": "Shigella dysenteriae 14 (organism)"
          },
          {
            "code": "406500002",
            "display": "Shigella flexneri 4c [IV:7,8] (organism)"
          },
          {
            "code": "406501003",
            "display": "Shigella flexneri 5a [V:3,4] (organism)"
          },
          {
            "code": "406502005",
            "display": "Shigella flexneri 5b [V:7,8] (organism)"
          },
          {
            "code": "406503000",
            "display": "Shigella flexneri serotype undetermined (Subgroup B) (organism)"
          },
          {
            "code": "406504006",
            "display": "Shigella sonnei (Subgroup D) (organism)"
          },
          {
            "code": "4298009",
            "display": "Shigella sonnei (organism)"
          },
          {
            "code": "43612004",
            "display": "Shigella dysenteriae (organism)"
          },
          {
            "code": "473764841000087103",
            "display": "Shigella flexneri 5b (organism)"
          },
          {
            "code": "50541000087103",
            "display": "Extensively drug resistant Shigella flexneri (organism)"
          },
          {
            "code": "50551000087100",
            "display": "Extensively drug resistant Shigella sonnei (organism)"
          },
          {
            "code": "55462008",
            "display": "Shigella boydii (organism)"
          },
          {
            "code": "646165971000087107",
            "display": "Shigella flexneri 5a (organism)"
          },
          {
            "code": "702989004",
            "display": "Shigella boydii or Shigella flexneri (finding)"
          },
          {
            "code": "708428008",
            "display": "Deoxyribonucleic acid of Shigella (substance)"
          },
          {
            "code": "718686007",
            "display": "Deoxyribonucleic acid of Shigella species or Enteroinvasive Escherichia coli detected (finding)"
          },
          {
            "code": "721911002",
            "display": "Extended spectrum beta-lactamase producing Shigella sonnei (organism)"
          },
          {
            "code": "721980008",
            "display": "Shigella flexneri serovar 6 biotype Manchester (organism)"
          },
          {
            "code": "726499009",
            "display": "Fluoroquinolone resistant Shigella (organism)"
          },
          {
            "code": "77352002",
            "display": "Genus Shigella (organism)"
          },
          {
            "code": "783138941000087102",
            "display": "Shigella dysenteriae, serovar 16 (organism)"
          },
          {
            "code": "85729005",
            "display": "Shigella flexneri (organism)"
          }
        ]
      }
    ]
  },
  "expansion": {
    "identifier": "urn:uuid:d493d3f4-a10f-44b5-a550-9551fd5a2568",
    "timestamp": "2025-05-23T18:49:46-04:00",
    "total": 92,
    "contains": [
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        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "1108201000112100",
        "display": "AmpC beta-lactamase producing Shigella (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "1108401000112101",
        "display": "Extended spectrum beta-lactamase producing Shigella (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "121037005",
        "display": "Antigen of Shigella (substance)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "121038000",
        "display": "Antigen of Shigella boydii (substance)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "121039008",
        "display": "Antigen of Shigella dysenteriae (substance)"
      },
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        "display": "Antigen of Shigella flexneri (substance)"
      },
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        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "121041009",
        "display": "Antigen of Shigella sonnei (substance)"
      },
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        "version": "http://snomed.info/sct/731000124108/version/20250301",
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        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "124996001",
        "display": "Shigella dysenteriae, serovar 2 (organism)"
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        "system": "http://snomed.info/sct",
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        "system": "http://snomed.info/sct",
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        "display": "Shigella dysenteriae, serovar 5 (organism)"
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        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125000008",
        "display": "Shigella dysenteriae, serovar 6 (organism)"
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        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125001007",
        "display": "Shigella dysenteriae, serovar 7 (organism)"
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        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125002000",
        "display": "Shigella dysenteriae, serovar 8 (organism)"
      },
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        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125003005",
        "display": "Shigella dysenteriae, serovar 9 (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125004004",
        "display": "Shigella dysenteriae, serovar 10 (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125005003",
        "display": "Shigella flexneri, serovar 1 (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125006002",
        "display": "Shigella flexneri, serovar 1a (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125007006",
        "display": "Shigella flexneri, serovar 1b (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125008001",
        "display": "Shigella flexneri, serovar 2 (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125009009",
        "display": "Shigella flexneri, serovar 2a (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125010004",
        "display": "Shigella flexneri, serovar 2b (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125011000",
        "display": "Shigella flexneri, serovar 3 (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125012007",
        "display": "Shigella flexneri, serovar 3a (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125013002",
        "display": "Shigella flexneri, serovar 3b (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125014008",
        "display": "Shigella flexneri, serovar 3c (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125015009",
        "display": "Shigella flexneri, serovar 4 (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125016005",
        "display": "Shigella flexneri, serovar 4a (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125017001",
        "display": "Shigella flexneri, serovar 4b (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125018006",
        "display": "Shigella flexneri, serovar 5 (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125019003",
        "display": "Shigella flexneri, serovar 6 (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "125020009",
        "display": "Shigella flexneri, serovar X (organism)"
      },
      {
        "system": "http://snomed.info/sct",
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