FHIR IG analytics| Package | us.nlm.vsac |
| Resource Type | ValueSet |
| Id | ValueSet-2.16.840.1.113762.1.4.1146.2465.json |
| FHIR Version | R4 |
| Source | https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.2465/expansion |
| URL | http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.2465 |
| Version | 20250219 |
| Status | active |
| Date | 2025-02-19T01:09:45-05:00 |
| Name | CRETestsForEnterobacteralesSpeciesExcludingProteusSppProvidenciaSppAndMorganellaSppByCultureAndIdentificationMethod |
| Title | CRE (Tests for Enterobacterales species [excluding Proteus spp., Providencia spp., and Morganella spp.] by Culture and Identification Method) |
| Realm | us |
| Authority | hl7 |
| Purpose | (Clinical Focus: This set of values contains codes for laboratory test names associated with tests for Enterobacterales species [excluding Proteus spp., Providencia spp., and Morganella spp.]by culture),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: Budvicia|Edwardsiella|Hafnia|Serratia|Yersinia|Cedecea|Citrobacter|Cronobacter|Enterobacter|Escherichia|Klebsiella|Kluyvera|Leclercia|Raoultella|Salmonella|Shigella|Erwinia|Pantoea|Dickeya),(Exclusion Criteria: Providencia|Morganella|Proteus) |
No resources found
| CodeSystem | |
| loinc.org | LOINC codes used in this IG |
No narrative content found in resource
FHIR
FHIRsmith{
"resourceType": "ValueSet",
"id": "2.16.840.1.113762.1.4.1146.2465",
"meta": {
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"extension": [
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"valueString": "CRE,Trigger"
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{
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"valueDate": "2025-02-19"
},
{
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"valueDate": "2025-02-19"
}
],
"url": "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.2465",
"identifier": [
{
"system": "urn:ietf:rfc:3986",
"value": "urn:oid:2.16.840.1.113762.1.4.1146.2465"
}
],
"version": "20250219",
"name": "CRETestsForEnterobacteralesSpeciesExcludingProteusSppProvidenciaSppAndMorganellaSppByCultureAndIdentificationMethod",
"title": "CRE (Tests for Enterobacterales species [excluding Proteus spp., Providencia spp., and Morganella spp.] by Culture and Identification Method)",
"status": "active",
"date": "2025-02-19T01:09:45-05:00",
"publisher": "CSTE Steward",
"jurisdiction": [
{
"coding": [
{
"system": "urn:iso:std:iso:3166",
"code": "US"
}
]
}
],
"purpose": "(Clinical Focus: This set of values contains codes for laboratory test names associated with tests for Enterobacterales species [excluding Proteus spp., Providencia spp., and Morganella spp.]by culture),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: Budvicia|Edwardsiella|Hafnia|Serratia|Yersinia|Cedecea|Citrobacter|Cronobacter|Enterobacter|Escherichia|Klebsiella|Kluyvera|Leclercia|Raoultella|Salmonella|Shigella|Erwinia|Pantoea|Dickeya),(Exclusion Criteria: Providencia|Morganella|Proteus)",
"compose": {
"include": [
{
"system": "http://loinc.org",
"concept": [
{
"code": "100899-4",
"display": "Enterobacteriaceae.extended spectrum beta lactamase resistance phenotype [Identifier] in Specimen by Organism specific culture"
},
{
"code": "100901-8",
"display": "Enterobacteriaceae.carbapenemase resistance phenotype [Identifier] in Anal by Organism specific culture"
},
{
"code": "100902-6",
"display": "Enterobacteriaceae.carbapenemase resistance phenotype.OXA-48 [Identifier] in Anal by Organism specific culture"
},
{
"code": "100909-1",
"display": "Cronobacter sakazakii [Presence] by Organism specific culture"
},
{
"code": "101371-3",
"display": "Yersinia pestis DNA [Presence] by NAA with non-probe detection in Positive blood culture"
},
{
"code": "101536-1",
"display": "Salmonella sp whole genome [Nucleotide sequence] in Isolate by Sequencing"
},
{
"code": "103789-4",
"display": "Aeromonas and plesiomonas sp identified in Stool by Organism specific culture"
},
{
"code": "104447-8",
"display": "Salmonella paratyphi DNA [Presence] in Isolate by NAA with probe detection"
},
{
"code": "104448-6",
"display": "Salmonella paratyphi [Identifier] in Isolate by Agglutination"
},
{
"code": "104450-2",
"display": "Salmonella typhi DNA [Presence] in Isolate by NAA with probe detection"
},
{
"code": "104767-9",
"display": "Salmonella sp [Identifier] in Isolate by Sequencing"
},
{
"code": "104772-9",
"display": "Salmonella sp serotype [Identifier] in Isolate by Sequencing"
},
{
"code": "104774-5",
"display": "Salmonella sp antigenic formula [Identifier] in Isolate by Sequencing"
},
{
"code": "105764-5",
"display": "Enterobacter spp DNA [Cycle Threshold #] in Positive blood culture by NAA with probe detection"
},
{
"code": "105765-2",
"display": "Escherichia coli DNA [Cycle Threshold #] in Positive blood culture by NAA with probe detection"
},
{
"code": "105766-0",
"display": "Klebsiella spp DNA [Cycle Threshold #] in Positive blood culture by NAA with probe detection"
},
{
"code": "105768-6",
"display": "Salmonella spp DNA [Cycle Threshold #] in Positive blood culture by NAA with probe detection"
},
{
"code": "105769-4",
"display": "Serratia spp DNA [Cycle Threshold #] in Positive blood culture by NAA with probe detection"
},
{
"code": "105776-9",
"display": "Enterobacterales DNA [Cycle Threshold #] in Positive blood culture by NAA with probe detection"
},
{
"code": "10851-4",
"display": "Escherichia coli O157:H7 [Presence] in Stool by Organism specific culture"
},
{
"code": "13318-1",
"display": "Escherichia coli enteroinvasive identified in Stool by Organism specific culture"
},
{
"code": "16832-8",
"display": "Escherichia coli enterotoxic identified in Stool by Organism specific culture"
},
{
"code": "16835-1",
"display": "Escherichia coli shiga-like toxin identified in Stool by Organism specific culture"
},
{
"code": "16836-9",
"display": "Escherichia coli verotoxic identified in Stool by Organism specific culture"
},
{
"code": "17563-8",
"display": "Salmonella sp identified in Specimen by Organism specific culture"
},
{
"code": "17576-0",
"display": "Shigella sp identified in Specimen by Organism specific culture"
},
{
"code": "20789-4",
"display": "Escherichia coli serotype [Identifier] in Isolate"
},
{
"code": "20811-6",
"display": "Escherichia coli [Presence] in Specimen by Culture FDA method"
},
{
"code": "20813-2",
"display": "Escherichia coli F41 [Presence] in Isolate by Agglutination"
},
{
"code": "20816-5",
"display": "Escherichia coli K88 [Presence] in Isolate by Agglutination"
},
{
"code": "20819-9",
"display": "Escherichia coli K99 [Presence] in Isolate by Agglutination"
},
{
"code": "20823-1",
"display": "Escherichia coli O157:H7 [Presence] in Raw milk by Organism specific culture"
},
{
"code": "20951-0",
"display": "Salmonella sp serotype [Identifier] in Isolate by Agglutination"
},
{
"code": "20953-6",
"display": "Salmonella sp identified in Tissue by Organism specific culture"
},
{
"code": "20955-1",
"display": "Salmonella sp identified in Stool by Organism specific culture"
},
{
"code": "20964-3",
"display": "Shigella sp identified in Feed by Organism specific culture"
},
{
"code": "23602-6",
"display": "Salmonella enteritidis [Presence] in Stool by Organism specific culture"
},
{
"code": "28549-4",
"display": "Yersinia sp identified in Stool by Organism specific culture"
},
{
"code": "33685-9",
"display": "Yersinia pestis [Presence] in Specimen by Organism specific culture"
},
{
"code": "33686-7",
"display": "Yersinia pestis [Presence] in Isolate by Organism specific culture"
},
{
"code": "33688-3",
"display": "Yersinia pestis Ag [Presence] in Isolate by Immunofluorescence"
},
{
"code": "33692-5",
"display": "Yersinia pestis DNA [Presence] in Isolate by NAA with probe detection"
},
{
"code": "33693-3",
"display": "Yersinia pestis [Presence] in Isolate by Phage lysis"
},
{
"code": "34891-2",
"display": "Salmonella enteritidis [Presence] in Specimen by Organism specific culture"
},
{
"code": "42255-0",
"display": "Salmonella and Shigella sp identified in Specimen by Organism specific culture"
},
{
"code": "42256-8",
"display": "Shigella boydii Ag [Presence] in Isolate"
},
{
"code": "42257-6",
"display": "Shigella dysenteriae Ag [Presence] in Isolate"
},
{
"code": "42258-4",
"display": "Shigella flexneri Ag [Presence] in Isolate"
},
{
"code": "42259-2",
"display": "Shigella sonnei Ag [Presence] in Isolate"
},
{
"code": "43371-4",
"display": "Salmonella and Shigella sp identified in Stool by Organism specific culture"
},
{
"code": "44089-1",
"display": "Escherichia coli O157:H7 [Identifier] in Specimen by Organism specific culture"
},
{
"code": "44090-9",
"display": "Escherichia coli O157:H7 [Presence] in Isolate by Organism specific culture"
},
{
"code": "45162-5",
"display": "Escherichia coli O157 Ag [Presence] in Isolate by Latex agglutination"
},
{
"code": "46454-5",
"display": "Shigella sp [Presence] in Specimen by Organism specific culture"
},
{
"code": "48806-4",
"display": "Salmonella sp+Shigella sp+Escherichia coli enterotoxic identified in Stool by Organism specific culture"
},
{
"code": "49056-5",
"display": "Shigella sp serotype [Identifier] in Isolate by Agglutination"
},
{
"code": "53944-5",
"display": "Escherichia coli enteroinvasive [Presence] in Isolate"
},
{
"code": "53945-2",
"display": "Escherichia coli adherence pattern [Identifier] in Isolate by Hep2 substrate"
},
{
"code": "53955-1",
"display": "Escherichia coli O157 identified in Isolate by Organism specific culture"
},
{
"code": "53956-9",
"display": "Salmonella typhi [Identifier] in Isolate by Agglutination"
},
{
"code": "56475-7",
"display": "Salmonella sp antigenic formula [Identifier] in Isolate by Agglutination"
},
{
"code": "59846-6",
"display": "Salmonella sp identified [Type] in Isolate"
},
{
"code": "65756-9",
"display": "Salmonella sp serovar [Type] in Isolate"
},
{
"code": "6595-3",
"display": "Klebsiella granulomatis [Presence] in Isolate by Organism specific culture"
},
{
"code": "701-3",
"display": "Yersinia sp identified in Specimen by Organism specific culture"
},
{
"code": "73664-5",
"display": "Yersinia adhesion protein YadA [Presence] in Isolate"
},
{
"code": "73673-6",
"display": "Yersinia enterocolitica serotype [Type] in Isolate by Agglutination"
},
{
"code": "77924-9",
"display": "Enterobacteriaceae.carbapenem resistant [Presence] in Anorectal or stool specimen by Organism specific culture"
},
{
"code": "82298-1",
"display": "Yersinia enterocolitica [Presence] in Specimen by Culture"
},
{
"code": "82300-5",
"display": "Shigella sp [Presence] in Stool by Culture"
},
{
"code": "82301-3",
"display": "Salmonella sp [Presence] in Stool by Culture"
},
{
"code": "82303-9",
"display": "Escherichia coli O157 [Presence] in Stool by Culture"
},
{
"code": "82304-7",
"display": "Plesiomonas shigelloides [Presence] in Stool by Culture"
},
{
"code": "85761-5",
"display": "Klebsiella pneumoniae DNA [Presence] by NAA with non-probe detection in Positive blood culture"
},
{
"code": "85771-4",
"display": "Enterobacteriaceae DNA [Presence] by NAA with non-probe detection in Positive blood culture"
},
{
"code": "85772-2",
"display": "Enterobacter cloacae complex DNA [Presence] by NAA with non-probe detection in Positive blood culture"
},
{
"code": "85773-0",
"display": "Escherichia coli DNA [Presence] by NAA with non-probe detection in Positive blood culture"
},
{
"code": "85774-8",
"display": "Klebsiella oxytoca DNA [Presence] by NAA with non-probe detection in Positive blood culture"
},
{
"code": "85777-1",
"display": "Serratia marcescens DNA [Presence] by NAA with non-probe detection in Positive blood culture"
},
{
"code": "87318-2",
"display": "Escherichia coli eaeA gene [Presence] in Isolate by NAA with probe detection"
},
{
"code": "87319-0",
"display": "Escherichia coli enteroaggregative astA gene [Presence] in Isolate by NAA with probe detection"
},
{
"code": "87320-8",
"display": "Escherichia coli enterotoxigenic heat-labile toxin DNA [Presence] in Isolate by NAA with probe detection"
},
{
"code": "87321-6",
"display": "Escherichia coli enterotoxigenic sta gene [Presence] in Isolate by NAA with probe detection"
},
{
"code": "87322-4",
"display": "Escherichia coli enterotoxigenic stb gene [Presence] in Isolate by NAA with probe detection"
},
{
"code": "87370-3",
"display": "Escherichia coli fasA gene [Presence] in Isolate by NAA with probe detection"
},
{
"code": "87371-1",
"display": "Escherichia coli fedF gene [Presence] in Isolate by NAA with probe detection"
},
{
"code": "87372-9",
"display": "Escherichia coli FimF41a gene [Presence] in Isolate by NAA with probe detection"
},
{
"code": "87373-7",
"display": "Escherichia coli K88 DNA [Presence] in Isolate by NAA with probe detection"
},
{
"code": "87374-5",
"display": "Escherichia coli K99 DNA [Presence] in Isolate by NAA with probe detection"
},
{
"code": "87375-2",
"display": "Escherichia coli paa gene [Presence] in Isolate by NAA with probe detection"
},
{
"code": "87376-0",
"display": "Escherichia coli Stx1 toxin stx1 gene [Presence] in Isolate by NAA with probe detection"
},
{
"code": "87377-8",
"display": "Escherichia coli Stx2 toxin stx2 gene [Presence] in Isolate by NAA with probe detection"
},
{
"code": "87380-2",
"display": "Escherichia coli Stx2e toxin stx2e gene [Presence] in Isolate by NAA with probe detection"
},
{
"code": "87402-4",
"display": "Escherichia coli aidA-I gene [Presence] in Isolate by NAA with probe detection"
},
{
"code": "88254-8",
"display": "Citrobacter sp ompA+mrkC genes [Presence] by Probe in Positive blood culture"
},
{
"code": "88255-5",
"display": "Enterobacter sp gyrB+metB genes [Presence] by Probe in Positive blood culture"
},
{
"code": "88258-9",
"display": "Escherichia coli oppA gene [Presence] by Probe in Positive blood culture"
},
{
"code": "88263-9",
"display": "Klebsiella oxytoca ompA gene [Presence] by Probe in Positive blood culture"
},
{
"code": "88264-7",
"display": "Klebsiella pneumoniae yggE gene [Presence] by Probe in Positive blood culture"
},
{
"code": "88586-3",
"display": "Shigella sp identified in Stool by Organism specific culture"
},
{
"code": "90067-0",
"display": "Enterobacteriaceae identified in Isolate by Organism specific culture"
},
{
"code": "93384-6",
"display": "Serratia sp DNA [Presence] by NAA with probe detection in Positive blood culture"
},
{
"code": "93385-3",
"display": "Salmonella sp DNA [Presence] by NAA with probe detection in Positive blood culture"
},
{
"code": "93392-9",
"display": "Serratia marcescens DNA [Presence] by NAA with probe detection in Positive blood culture"
},
{
"code": "93395-2",
"display": "Klebsiella pneumoniae DNA [Presence] by NAA with probe detection in Positive blood culture"
},
{
"code": "93398-6",
"display": "Klebsiella oxytoca DNA [Presence] by NAA with probe detection in Positive blood culture"
},
{
"code": "93400-0",
"display": "Enterobacter aerogenes+Enterobacter amnigenus+Enterobacter gergoviae DNA [Presence] by NAA with probe detection in Positive blood culture"
},
{
"code": "93401-8",
"display": "Escherichia coli DNA [Presence] by NAA with probe detection in Positive blood culture"
},
{
"code": "93402-6",
"display": "Cronobacter sakazakii DNA [Presence] by NAA with probe detection in Positive blood culture"
},
{
"code": "93403-4",
"display": "Citrobacter sp DNA [Presence] by NAA with probe detection in Positive blood culture"
},
{
"code": "93404-2",
"display": "Enterobacter cloacae complex DNA [Presence] by NAA with probe detection in Positive blood culture"
},
{
"code": "96306-6",
"display": "Enterobacterales DNA [Presence] by NAA with non-probe detection in Positive blood culture"
},
{
"code": "96307-4",
"display": "Klebsiella pneumoniae+Klebsiella variicola+Klebsiella quasipneumoniae DNA [Presence] by NAA with non-probe detection in Positive blood culture"
},
{
"code": "96308-2",
"display": "Klebsiella aerogenes DNA [Presence] by NAA with non-probe detection in Positive blood culture"
},
{
"code": "96313-2",
"display": "Salmonella sp DNA [Presence] by NAA with non-probe detection in Positive blood culture"
}
]
}
]
},
"expansion": {
"identifier": "urn:uuid:997ec039-20cb-476e-be8b-a9b9ed2140e6",
"timestamp": "2025-05-23T18:47:00-04:00",
"total": 115,
"contains": [
{
"system": "http://loinc.org",
"version": "2.80",
"code": "100899-4",
"display": "Enterobacteriaceae.extended spectrum beta lactamase resistance phenotype [Identifier] in Specimen by Organism specific culture"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "100901-8",
"display": "Enterobacteriaceae.carbapenemase resistance phenotype [Identifier] in Anal by Organism specific culture"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "100902-6",
"display": "Enterobacteriaceae.carbapenemase resistance phenotype.OXA-48 [Identifier] in Anal by Organism specific culture"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "100909-1",
"display": "Cronobacter sakazakii [Presence] by Organism specific culture"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "101371-3",
"display": "Yersinia pestis DNA [Presence] by NAA with non-probe detection in Positive blood culture"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "101536-1",
"display": "Salmonella sp whole genome [Nucleotide sequence] in Isolate by Sequencing"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "103789-4",
"display": "Aeromonas and plesiomonas sp identified in Stool by Organism specific culture"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "104447-8",
"display": "Salmonella paratyphi DNA [Presence] in Isolate by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "104448-6",
"display": "Salmonella paratyphi [Identifier] in Isolate by Agglutination"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "104450-2",
"display": "Salmonella typhi DNA [Presence] in Isolate by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "104767-9",
"display": "Salmonella sp [Identifier] in Isolate by Sequencing"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "104772-9",
"display": "Salmonella sp serotype [Identifier] in Isolate by Sequencing"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "104774-5",
"display": "Salmonella sp antigenic formula [Identifier] in Isolate by Sequencing"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "105764-5",
"display": "Enterobacter spp DNA [Cycle Threshold #] in Positive blood culture by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "105765-2",
"display": "Escherichia coli DNA [Cycle Threshold #] in Positive blood culture by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "105766-0",
"display": "Klebsiella spp DNA [Cycle Threshold #] in Positive blood culture by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "105768-6",
"display": "Salmonella spp DNA [Cycle Threshold #] in Positive blood culture by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "105769-4",
"display": "Serratia spp DNA [Cycle Threshold #] in Positive blood culture by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "105776-9",
"display": "Enterobacterales DNA [Cycle Threshold #] in Positive blood culture by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "10851-4",
"display": "Escherichia coli O157:H7 [Presence] in Stool by Organism specific culture"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "13318-1",
"display": "Escherichia coli enteroinvasive identified in Stool by Organism specific culture"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "16832-8",
"display": "Escherichia coli enterotoxic identified in Stool by Organism specific culture"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "16835-1",
"display": "Escherichia coli shiga-like toxin identified in Stool by Organism specific culture"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "16836-9",
"display": "Escherichia coli verotoxic identified in Stool by Organism specific culture"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "17563-8",
"display": "Salmonella sp identified in Specimen by Organism specific culture"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "17576-0",
"display": "Shigella sp identified in Specimen by Organism specific culture"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "20789-4",
"display": "Escherichia coli serotype [Identifier] in Isolate"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "20811-6",
"display": "Escherichia coli [Presence] in Specimen by Culture FDA method"
},
{
"system": "http://loinc.org",
"version": "2.80",
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{
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{
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{
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{
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