FHIR IG analytics| Package | us.nlm.vsac |
| Resource Type | ValueSet |
| Id | ValueSet-2.16.840.1.113762.1.4.1146.2172.json |
| FHIR Version | R4 |
| Source | https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.2172/expansion |
| URL | http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.2172 |
| Version | 20240620 |
| Status | active |
| Date | 2024-06-20T01:22:57-04:00 |
| Name | VirusesCausingEncephalitisTestsForVirusesCausingEncephalitisNucleicAcidInUnspecifiedSpecimen |
| Title | Viruses [Causing Encephalitis] (Tests for Viruses Causing Encephalitis Nucleic Acid in Unspecified Specimen) |
| Realm | us |
| Authority | hl7 |
| Purpose | (Clinical Focus: This set of values contains codes for laboratory test names associated with Encephalitis-causing Virus),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: Encephalitis-causing Virus),(Exclusion Criteria: none) |
No resources found
| CodeSystem | |
| loinc.org | LOINC codes used in this IG |
No narrative content found in resource
FHIR
FHIRsmith{
"resourceType": "ValueSet",
"id": "2.16.840.1.113762.1.4.1146.2172",
"meta": {
"versionId": "14",
"lastUpdated": "2024-06-20T01:22:57.000-04:00",
"profile": [
"http://hl7.org/fhir/StructureDefinition/shareablevalueset",
"http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/computable-valueset-cqfm",
"http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/publishable-valueset-cqfm"
]
},
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/valueset-author",
"valueContactDetail": {
"name": "CSTE Author"
}
},
{
"url": "http://hl7.org/fhir/StructureDefinition/valueset-keyWord",
"valueString": "Encephalitis,Trigger"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate",
"valueDate": "2024-06-20"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate",
"valueDate": "2024-06-20"
}
],
"url": "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.2172",
"identifier": [
{
"system": "urn:ietf:rfc:3986",
"value": "urn:oid:2.16.840.1.113762.1.4.1146.2172"
}
],
"version": "20240620",
"name": "VirusesCausingEncephalitisTestsForVirusesCausingEncephalitisNucleicAcidInUnspecifiedSpecimen",
"title": "Viruses [Causing Encephalitis] (Tests for Viruses Causing Encephalitis Nucleic Acid in Unspecified Specimen)",
"status": "active",
"date": "2024-06-20T01:22:57-04:00",
"publisher": "CSTE Steward",
"jurisdiction": [
{
"coding": [
{
"system": "urn:iso:std:iso:3166",
"code": "US"
}
]
}
],
"purpose": "(Clinical Focus: This set of values contains codes for laboratory test names associated with Encephalitis-causing Virus),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: Encephalitis-causing Virus),(Exclusion Criteria: none)",
"compose": {
"include": [
{
"system": "http://loinc.org",
"concept": [
{
"code": "100982-8",
"display": "Varicella zoster virus DNA [Log #/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "101567-6",
"display": "Parainfluenza virus RNA in Specimen Document"
},
{
"code": "11483-5",
"display": "Varicella zoster virus DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "16130-7",
"display": "Herpes simplex virus 1 DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "16131-5",
"display": "Herpes simplex virus 2 DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "20444-6",
"display": "Herpes simplex virus 1+2 DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "22827-0",
"display": "Influenza virus A subtype [Identifier] in Specimen by NAA with probe detection"
},
{
"code": "23553-1",
"display": "Venezuelan equine encephalitis virus subtype [Identifier] in Specimen by NAA with probe detection"
},
{
"code": "24041-6",
"display": "Cytomegalovirus DNA [Units/volume] (viral load) in Specimen by Probe with signal amplification"
},
{
"code": "25836-8",
"display": "HIV 1 RNA [#/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "25842-6",
"display": "HIV 2 proviral DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "29495-9",
"display": "Herpes virus 6 DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "29591-5",
"display": "Enterovirus RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "29908-1",
"display": "Parainfluenza virus 1 RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "29909-9",
"display": "Parainfluenza virus 2 RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "29910-7",
"display": "Parainfluenza virus 3 RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "30554-0",
"display": "HIV reverse transcriptase gene mutations detected [Identifier]"
},
{
"code": "32585-2",
"display": "Epstein Barr virus DNA [#/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "33006-8",
"display": "Cytomegalovirus DNA [#/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "33027-4",
"display": "Herpes simplex virus+Varicella zoster virus DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "33630-5",
"display": "HIV protease gene mutations detected [Identifier]"
},
{
"code": "33631-3",
"display": "Cytomegalovirus UL54 gene mutations detected [Identifier]"
},
{
"code": "33632-1",
"display": "Cytomegalovirus UL54+UL97 gene mutations detected [Identifier]"
},
{
"code": "33940-8",
"display": "Herpes virus 6 DNA [Presence] in Tissue by NAA with probe detection"
},
{
"code": "34487-9",
"display": "Influenza virus A RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "34700-5",
"display": "HIV reverse transcriptase+protease gene mutations tested for"
},
{
"code": "34720-3",
"display": "Cytomegalovirus DNA [Units/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "34892-0",
"display": "West Nile virus RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "35396-1",
"display": "Enterovirus RNA [Presence] in Tissue by NAA with probe detection"
},
{
"code": "35400-1",
"display": "Varicella zoster virus DNA [Presence] in Tissue by NAA with probe detection"
},
{
"code": "37983-4",
"display": "Eastern equine encephalitis virus RNA [Presence] in Specimen by Probe"
},
{
"code": "37984-2",
"display": "Saint Louis encephalitis virus RNA [Presence] in Specimen by Probe"
},
{
"code": "37985-9",
"display": "West Nile virus RNA [Presence] in Specimen by Probe"
},
{
"code": "37986-7",
"display": "California serogroup RNA [Presence] in Specimen by Probe"
},
{
"code": "38270-5",
"display": "Influenza virus A H7 RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "38271-3",
"display": "Influenza virus A H6 RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "38272-1",
"display": "Influenza virus A H5 RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "38348-9",
"display": "Herpes virus 6 DNA [Identifier] in Specimen by NAA with probe detection"
},
{
"code": "38349-7",
"display": "Herpes virus 6 DNA [#/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "38350-5",
"display": "Herpes virus 6 DNA [Log #/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "38381-0",
"display": "Influenza virus A cDNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "39025-2",
"display": "Influenza virus A hemagglutinin cDNA [Identifier] in Specimen by Sequencing"
},
{
"code": "39102-9",
"display": "Influenza virus A hemagglutinin cDNA [Identifier] in Specimen by NAA with probe detection"
},
{
"code": "39103-7",
"display": "Influenza virus A neuraminidase cDNA [Identifier] in Specimen by NAA with probe detection"
},
{
"code": "39528-5",
"display": "Adenovirus DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "40444-2",
"display": "CMV gene mutations detected [Identifier]"
},
{
"code": "40975-5",
"display": "Adenovirus DNA [Identifier] in Specimen by RFLP"
},
{
"code": "40976-3",
"display": "Adenovirus DNA [Identifier] in Specimen by NAA with probe detection"
},
{
"code": "40982-1",
"display": "Influenza virus B RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "41003-5",
"display": "Human coronavirus 229E RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "41010-0",
"display": "Parainfluenza virus 4 RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "44263-2",
"display": "Influenza virus A RNA [Units/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "44264-0",
"display": "Influenza virus A H5 RNA [Units/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "44265-7",
"display": "Influenza virus A H6 RNA [Units/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "44266-5",
"display": "Influenza virus A H7 RNA [Units/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "44423-2",
"display": "Herpes virus 7 DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "44795-3",
"display": "Influenza virus A H5 Asian RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "45175-7",
"display": "HIV nucleoside reverse transcriptase gene mutations detected [Identifier]"
},
{
"code": "45176-5",
"display": "HIV nonnucleoside reverse transcriptase gene mutations detected [Identifier]"
},
{
"code": "47532-7",
"display": "Mumps virus RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "48508-6",
"display": "Measles virus RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "48509-4",
"display": "Influenza virus A and B RNA [Identifier] in Specimen by NAA with probe detection"
},
{
"code": "48510-2",
"display": "HIV 1 RNA [Log #/volume] (viral load) in Serum or Plasma by Probe and target amplification method detection limit = 1.7 log copies/mL"
},
{
"code": "49335-3",
"display": "Adenovirus DNA [#/volume] (viral load) in Tissue by NAA with probe detection"
},
{
"code": "49340-3",
"display": "Adenovirus DNA [#/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "49351-0",
"display": "Cytomegalovirus DNA [#/volume] (viral load) in Tissue by NAA with probe detection"
},
{
"code": "49381-7",
"display": "Herpes simplex virus 1+2 DNA [#/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "49382-5",
"display": "Herpes simplex virus 1+2 DNA [#/volume] (viral load) in Tissue by NAA with probe detection"
},
{
"code": "49390-8",
"display": "Herpes virus 6 DNA [#/volume] (viral load) in Tissue by NAA with probe detection"
},
{
"code": "49399-9",
"display": "Herpes virus 7 DNA [#/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "49403-9",
"display": "Herpes virus 8 DNA [#/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "49450-0",
"display": "Varicella zoster virus DNA [#/volume] (viral load) in Tissue by NAA with probe detection"
},
{
"code": "49451-8",
"display": "Varicella zoster virus DNA [#/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "49520-0",
"display": "Influenza virus A H1 RNA [Presence] in Isolate by NAA with probe detection"
},
{
"code": "49521-8",
"display": "Influenza virus A H1 RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "49523-4",
"display": "Influenza virus A H3 RNA [Presence] in Isolate by NAA with probe detection"
},
{
"code": "49524-2",
"display": "Influenza virus A H3 RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "49526-7",
"display": "Influenza virus A H5 RNA [Presence] in Isolate by NAA with probe detection"
},
{
"code": "49527-5",
"display": "Influenza virus A H7 RNA [Presence] in Isolate by NAA with probe detection"
},
{
"code": "49528-3",
"display": "Influenza virus A H9 RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "49531-7",
"display": "Influenza virus A RNA [Presence] in Isolate by NAA with probe detection"
},
{
"code": "49532-5",
"display": "Influenza virus A hemagglutinin type RNA [Identifier] in Isolate by Sequencing"
},
{
"code": "49656-2",
"display": "HIV protease gene mutations by Genotype method"
},
{
"code": "49661-2",
"display": "HIV protease gene mutations by Phenotype method"
},
{
"code": "49890-7",
"display": "HIV 1 RNA [Log #/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "4997-3",
"display": "Cytomegalovirus DNA [Presence] in Tissue by Probe"
},
{
"code": "4998-1",
"display": "Cytomegalovirus DNA [Presence] in Tissue by NAA with probe detection"
},
{
"code": "49986-3",
"display": "Herpes simplex virus 1 DNA [#/volume] (viral load) in Body fluid by NAA with probe detection"
},
{
"code": "49989-7",
"display": "Herpes simplex virus 2 DNA [#/volume] (viral load) in Body fluid by NAA with probe detection"
},
{
"code": "5000-5",
"display": "Cytomegalovirus DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "5005-4",
"display": "Epstein Barr virus DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "5014-6",
"display": "Herpes simplex virus DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "5018-7",
"display": "HIV 1 RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "50547-9",
"display": "Eastern equine encephalitis virus RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "50700-4",
"display": "Influenza virus A.adamantane resistant RNA [Presence] by NAA with probe detection"
},
{
"code": "50702-0",
"display": "Influenza virus A matrix protein RNA [Presence] in Isolate by Sequencing"
},
{
"code": "50704-6",
"display": "Influenza virus A nucleoprotein RNA [Presence] in Isolate by Sequencing"
},
{
"code": "50705-3",
"display": "Influenza virus A non-structural protein RNA [Presence] in Isolate by Sequencing"
},
{
"code": "50706-1",
"display": "Influenza virus A polymerase A RNA [Presence] in Isolate by Sequencing"
},
{
"code": "50707-9",
"display": "Influenza virus A polymerase B1 cDNA [Presence] in Isolate by Sequencing"
},
{
"code": "50708-7",
"display": "Influenza virus A polymerase B2 RNA [Presence] in Isolate by Sequencing"
},
{
"code": "50711-1",
"display": "Influenza virus A polymerase RNA [Identifier] in Isolate by Sequencing"
},
{
"code": "50790-5",
"display": "HIV 1 RNA tropism [Identifier]"
},
{
"code": "51646-8",
"display": "Rabies virus RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "51647-6",
"display": "Rabies virus RNA [Presence] in Specimen by Probe"
},
{
"code": "51664-1",
"display": "Chikungunya virus RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "51666-6",
"display": "Japanese encephalitis virus RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "51667-4",
"display": "Lymphocytic choriomeningitis virus RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "53250-7",
"display": "Influenza virus A RNA [#/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "53251-5",
"display": "Influenza virus B RNA [#/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "53252-3",
"display": "Parainfluenza virus 1 RNA [#/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "53253-1",
"display": "Parainfluenza virus 2 RNA [#/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "53254-9",
"display": "Parainfluenza virus 3 RNA [#/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "53256-4",
"display": "Enterovirus RNA [#/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "53763-9",
"display": "Cytomegalovirus DNA [Log #/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "53774-6",
"display": "Epstein Barr virus DNA [Log #/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "53798-5",
"display": "HIV reverse transcriptase+protease gene mutations detected [Identifier]"
},
{
"code": "53874-4",
"display": "Jamestown canyon virus RNA [Units/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "54036-9",
"display": "Western equine encephalitis virus RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "54091-4",
"display": "Rubella virus RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "54243-1",
"display": "Influenza virus RNA [Identifier] in Specimen by Probe"
},
{
"code": "55133-3",
"display": "Influenza virus A hemagglutinin cDNA [Identifier] in Isolate by NAA with probe detection"
},
{
"code": "55134-1",
"display": "Influenza virus A neuraminidase RNA [Identifier] in Isolate by NAA with probe detection"
},
{
"code": "55143-2",
"display": "California serogroup RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "55144-0",
"display": "Powassan virus RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "55145-7",
"display": "Saint Louis encephalitis virus RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "55463-4",
"display": "Influenza virus A swine origin RNA [Identifier] in Specimen by NAA with probe detection"
},
{
"code": "55464-2",
"display": "Influenza virus A swine origin RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "55465-9",
"display": "Influenza virus A H1 2009 pandemic RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "56024-3",
"display": "Influenza virus A N1 RNA [Units/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "57985-4",
"display": "Influenza virus A H2 RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "59423-4",
"display": "Influenza virus A hemagglutinin type RNA [Identifier] in Specimen by NAA with probe detection"
},
{
"code": "59424-2",
"display": "Influenza virus A hemagglutinin type RNA [Identifier] in Isolate by NAA with probe detection"
},
{
"code": "60254-0",
"display": "Parainfluenza virus 1+2+3 RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "60259-9",
"display": "Adenovirus DNA [Presence] in Isolate by NAA with probe detection"
},
{
"code": "60263-1",
"display": "Enterovirus RNA [Presence] in Isolate by NAA with probe detection"
},
{
"code": "60270-6",
"display": "Rabies virus RNA [Presence] in Isolate by NAA with probe detection"
},
{
"code": "60422-3",
"display": "Measles virus genotype [Identifier] in Specimen by NAA with probe detection"
},
{
"code": "60429-8",
"display": "Enterovirus 71 RNA [Presence] in Isolate by NAA with probe detection"
},
{
"code": "60461-1",
"display": "Herpes simplex virus 1 DNA [#/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "60462-9",
"display": "Herpes simplex virus 2 DNA [#/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "60494-2",
"display": "Influenza virus A H1 2009 pandemic and Influenza virus A swine origin RNA [Interpretation] in Specimen Qualitative by NAA with probe detection"
},
{
"code": "60528-7",
"display": "Enterovirus subtype in Specimen by NAA with probe detection"
},
{
"code": "60530-3",
"display": "Influenza virus A H9 RNA [Presence] in Isolate by NAA with probe detection"
},
{
"code": "60538-6",
"display": "Influenza virus A H1+H3+B RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "61101-2",
"display": "Influenza virus A neuraminidase RNA [Type] in Specimen by Sequencing"
},
{
"code": "61199-6",
"display": "HIV 1 integrase gene mutations detected [Identifier]"
},
{
"code": "61363-8",
"display": "Adenovirus 3+4+7+21 DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "61364-6",
"display": "Echovirus+Coxsackievirus RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "61365-3",
"display": "Parainfluenza virus RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "62462-7",
"display": "Influenza virus A+B RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "62471-8",
"display": "Herpes simplex virus 1 DNA [#/volume] (viral load) in Tissue by NAA with probe detection"
},
{
"code": "62475-9",
"display": "Herpes simplex virus 2 DNA [#/volume] (viral load) in Tissue by NAA with probe detection"
},
{
"code": "62485-8",
"display": "Herpes virus 6A DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "62486-6",
"display": "Herpes virus 6B DNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "62860-2",
"display": "Influenza virus C RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "62861-0",
"display": "Enterovirus 71 RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "6307-3",
"display": "Adenovirus rRNA [Presence] in Tissue by Probe"
},
{
"code": "6308-1",
"display": "Adenovirus rRNA [Presence] in Specimen by Probe"
},
{
"code": "6387-5",
"display": "Dengue virus DNA [Presence] in Specimen by Probe"
},
{
"code": "64038-3",
"display": "Adenovirus DNA [Log #/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "66720-4",
"display": "Adenovirus DNA [Log #/volume] (viral load) in Body fluid by NAA with probe detection"
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