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Packageus.nlm.vsac
Resource TypeValueSet
IdValueSet-2.16.840.1.113762.1.4.1146.1566.json
FHIR VersionR4
Sourcehttps://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.1566/expansion
URLhttp://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1566
Version20240123
Statusactive
Date2024-01-23T01:10:32-05:00
NameVirusesCausingMeningitisTestsForNucleicAcidInCerebrospinalFluid
TitleViruses [Causing Meningitis] (Tests for Nucleic Acid in Cerebrospinal Fluid)
Realmus
Authorityhl7
Purpose(Clinical Focus: This set of values contains codes for laboratory test names associated with Meningitis-causing Virus in CSF),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: Meningitis-causing Virus in CSF),(Exclusion Criteria: none)

Resources that use this resource

No resources found


Resources that this resource uses

CodeSystem
loinc.orgLOINC codes used in this IG

Narrative

No narrative content found in resource


Source1

{
  "resourceType": "ValueSet",
  "id": "2.16.840.1.113762.1.4.1146.1566",
  "meta": {
    "versionId": "18",
    "lastUpdated": "2024-01-23T01:10:32.000-05:00",
    "profile": [
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      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/computable-valueset-cqfm",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/publishable-valueset-cqfm"
    ]
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-author",
      "valueContactDetail": {
        "name": "CSTE Author"
      }
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-keyWord",
      "valueString": "Meningitis,Trigger"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate",
      "valueDate": "2025-01-13"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate",
      "valueDate": "2024-01-23"
    }
  ],
  "url": "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1566",
  "identifier": [
    {
      "system": "urn:ietf:rfc:3986",
      "value": "urn:oid:2.16.840.1.113762.1.4.1146.1566"
    }
  ],
  "version": "20240123",
  "name": "VirusesCausingMeningitisTestsForNucleicAcidInCerebrospinalFluid",
  "title": "Viruses [Causing Meningitis] (Tests for Nucleic Acid in Cerebrospinal Fluid)",
  "status": "active",
  "date": "2024-01-23T01:10:32-05:00",
  "publisher": "CSTE Steward",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "urn:iso:std:iso:3166",
          "code": "US"
        }
      ]
    }
  ],
  "purpose": "(Clinical Focus: This set of values contains codes for laboratory test names associated with Meningitis-causing Virus in CSF),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: Meningitis-causing Virus in CSF),(Exclusion Criteria: none)",
  "compose": {
    "include": [
      {
        "system": "http://loinc.org",
        "concept": [
          {
            "code": "101818-3",
            "display": "Herpes virus 6 DNA [Units/volume] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "16952-4",
            "display": "Herpes simplex virus 1 DNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "16960-7",
            "display": "Herpes simplex virus 2 DNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "26690-8",
            "display": "Western equine encephalitis virus RNA [Presence] in Cerebral spinal fluid by Probe"
          },
          {
            "code": "26825-0",
            "display": "Eastern equine encephalitis virus RNA [Presence] in Cerebral spinal fluid by Probe"
          },
          {
            "code": "27950-5",
            "display": "Saint Louis encephalitis virus RNA [Presence] in Cerebral spinal fluid by Probe"
          },
          {
            "code": "27952-1",
            "display": "Enterovirus RNA [Presence] in Cerebral spinal fluid by Probe"
          },
          {
            "code": "29558-4",
            "display": "Enterovirus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "32141-4",
            "display": "Herpes simplex virus 1+2 DNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "33942-4",
            "display": "Herpes virus 6 DNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "34450-7",
            "display": "Eastern equine encephalitis virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "34453-1",
            "display": "Jamestown canyon virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "34455-6",
            "display": "La Crosse virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "34457-2",
            "display": "Powassan virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "34459-8",
            "display": "Saint Louis encephalitis virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "34461-4",
            "display": "West Nile virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "34462-2",
            "display": "California serogroup RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "34655-1",
            "display": "Herpes simplex virus 1+2 DNA [#/volume] (viral load) in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "49388-2",
            "display": "Herpes virus 6 DNA [#/volume] (viral load) in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "49400-5",
            "display": "Herpes virus 7 DNA [#/volume] (viral load) in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "49407-0",
            "display": "Herpes virus 8 DNA [#/volume] (viral load) in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "49987-1",
            "display": "Herpes simplex virus 1 DNA [#/volume] (viral load) in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "49990-5",
            "display": "Herpes simplex virus 2 DNA [#/volume] (viral load) in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "5013-8",
            "display": "Herpes simplex virus DNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "62463-5",
            "display": "Enterovirus RNA [#/volume] (viral load) in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "62481-7",
            "display": "Herpes virus 6A DNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "62482-5",
            "display": "Herpes virus 6B DNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "77958-7",
            "display": "Dengue virus 1 and 2 and 3 and 4 RNA [Identifier] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "77959-5",
            "display": "Yellow fever virus ns5 gene [Presence] in Cerebral spinal fluid by NAA with non-probe detection"
          },
          {
            "code": "7968-1",
            "display": "Mumps virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "80826-1",
            "display": "Zika virus envelope E gene [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "81151-3",
            "display": "Dengue virus 1+2+3+4 5' UTR RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "81153-9",
            "display": "Chikungunya virus non-structural protein 1 (nsP1) RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "82190-0",
            "display": "Herpes simplex virus 1 DNA [Presence] in Cerebral spinal fluid by NAA with non-probe detection"
          },
          {
            "code": "82191-8",
            "display": "Herpes simplex virus 2 DNA [Presence] in Cerebral spinal fluid by NAA with non-probe detection"
          },
          {
            "code": "82192-6",
            "display": "Herpes virus 6 DNA [Presence] in Cerebral spinal fluid by NAA with non-probe detection"
          },
          {
            "code": "82194-2",
            "display": "Enterovirus RNA [Presence] in Cerebral spinal fluid by NAA with non-probe detection"
          },
          {
            "code": "86568-3",
            "display": "Influenza virus A RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "86571-7",
            "display": "Influenza virus B RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "86575-8",
            "display": "Measles virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "86594-9",
            "display": "Zika virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "88207-6",
            "display": "Lymphocytic choriomeningitis virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "88598-8",
            "display": "Toscana virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
          },
          {
            "code": "97752-0",
            "display": "Herpes virus 6 DNA [Log #/volume] (viral load) in Cerebral spinal fluid by NAA with probe detection"
          }
        ]
      }
    ]
  },
  "expansion": {
    "identifier": "urn:uuid:6f2b4f67-e36c-4f30-85fd-32d1e02c8c7c",
    "timestamp": "2025-05-23T18:29:00-04:00",
    "total": 44,
    "contains": [
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "101818-3",
        "display": "Herpes virus 6 DNA [Units/volume] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "16952-4",
        "display": "Herpes simplex virus 1 DNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "16960-7",
        "display": "Herpes simplex virus 2 DNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "26690-8",
        "display": "Western equine encephalitis virus RNA [Presence] in Cerebral spinal fluid by Probe"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "26825-0",
        "display": "Eastern equine encephalitis virus RNA [Presence] in Cerebral spinal fluid by Probe"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "27950-5",
        "display": "Saint Louis encephalitis virus RNA [Presence] in Cerebral spinal fluid by Probe"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "27952-1",
        "display": "Enterovirus RNA [Presence] in Cerebral spinal fluid by Probe"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "29558-4",
        "display": "Enterovirus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "32141-4",
        "display": "Herpes simplex virus 1+2 DNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "33942-4",
        "display": "Herpes virus 6 DNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "34450-7",
        "display": "Eastern equine encephalitis virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "34453-1",
        "display": "Jamestown canyon virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "34455-6",
        "display": "La Crosse virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "34457-2",
        "display": "Powassan virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "34459-8",
        "display": "Saint Louis encephalitis virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "34461-4",
        "display": "West Nile virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "34462-2",
        "display": "California serogroup RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "34655-1",
        "display": "Herpes simplex virus 1+2 DNA [#/volume] (viral load) in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "49388-2",
        "display": "Herpes virus 6 DNA [#/volume] (viral load) in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "49400-5",
        "display": "Herpes virus 7 DNA [#/volume] (viral load) in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "49407-0",
        "display": "Herpes virus 8 DNA [#/volume] (viral load) in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "49987-1",
        "display": "Herpes simplex virus 1 DNA [#/volume] (viral load) in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "49990-5",
        "display": "Herpes simplex virus 2 DNA [#/volume] (viral load) in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "5013-8",
        "display": "Herpes simplex virus DNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "62463-5",
        "display": "Enterovirus RNA [#/volume] (viral load) in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "62481-7",
        "display": "Herpes virus 6A DNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "62482-5",
        "display": "Herpes virus 6B DNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "77958-7",
        "display": "Dengue virus 1 and 2 and 3 and 4 RNA [Identifier] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "77959-5",
        "display": "Yellow fever virus ns5 gene [Presence] in Cerebral spinal fluid by NAA with non-probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "7968-1",
        "display": "Mumps virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "80826-1",
        "display": "Zika virus envelope E gene [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "81151-3",
        "display": "Dengue virus 1+2+3+4 5' UTR RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "81153-9",
        "display": "Chikungunya virus non-structural protein 1 (nsP1) RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "82190-0",
        "display": "Herpes simplex virus 1 DNA [Presence] in Cerebral spinal fluid by NAA with non-probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "82191-8",
        "display": "Herpes simplex virus 2 DNA [Presence] in Cerebral spinal fluid by NAA with non-probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "82192-6",
        "display": "Herpes virus 6 DNA [Presence] in Cerebral spinal fluid by NAA with non-probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "82194-2",
        "display": "Enterovirus RNA [Presence] in Cerebral spinal fluid by NAA with non-probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "86568-3",
        "display": "Influenza virus A RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "86571-7",
        "display": "Influenza virus B RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "86575-8",
        "display": "Measles virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "86594-9",
        "display": "Zika virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "88207-6",
        "display": "Lymphocytic choriomeningitis virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "88598-8",
        "display": "Toscana virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "97752-0",
        "display": "Herpes virus 6 DNA [Log #/volume] (viral load) in Cerebral spinal fluid by NAA with probe detection"
      }
    ]
  }
}