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Packageus.nlm.vsac
Resource TypeValueSet
IdValueSet-2.16.840.1.113762.1.4.1146.1454.json
FHIR VersionR4
Sourcehttps://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.1454/expansion
URLhttp://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1454
Version20250218
Statusactive
Date2025-02-18T01:09:31-05:00
NameStaphylococcusAureusTestsForStaphAureusNucleicAcid
TitleStaphylococcus aureus (Tests for Staph aureus Nucleic Acid)
Realmus
Authorityhl7
Purpose(Clinical Focus: This set of values contains codes for laboratory test names associated with detecting the presence of Staphylococcus aureus nucleic acid),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: Staph aureus nucleic acid),(Exclusion Criteria: none)

Resources that use this resource

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Resources that this resource uses

CodeSystem
loinc.orgLOINC codes used in this IG

Narrative

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Source1

{
  "resourceType": "ValueSet",
  "id": "2.16.840.1.113762.1.4.1146.1454",
  "meta": {
    "versionId": "20",
    "lastUpdated": "2025-02-18T01:09:30.000-05:00",
    "profile": [
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      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/computable-valueset-cqfm",
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    ]
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-author",
      "valueContactDetail": {
        "name": "CSTE Author"
      }
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-keyWord",
      "valueString": "MRSA,Trigger"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate",
      "valueDate": "2025-02-18"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate",
      "valueDate": "2025-02-18"
    }
  ],
  "url": "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1454",
  "identifier": [
    {
      "system": "urn:ietf:rfc:3986",
      "value": "urn:oid:2.16.840.1.113762.1.4.1146.1454"
    }
  ],
  "version": "20250218",
  "name": "StaphylococcusAureusTestsForStaphAureusNucleicAcid",
  "title": "Staphylococcus aureus (Tests for Staph aureus Nucleic Acid)",
  "status": "active",
  "date": "2025-02-18T01:09:31-05:00",
  "publisher": "CSTE Steward",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "urn:iso:std:iso:3166",
          "code": "US"
        }
      ]
    }
  ],
  "purpose": "(Clinical Focus: This set of values contains codes for laboratory test names associated with detecting the presence of  Staphylococcus aureus nucleic acid),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: Staph aureus nucleic acid),(Exclusion Criteria: none)",
  "compose": {
    "include": [
      {
        "system": "http://loinc.org",
        "concept": [
          {
            "code": "103141-8",
            "display": "Staphylococcus aureus MLVA complex [Type] in Isolate or Specimen by Molecular genetics method"
          },
          {
            "code": "103163-2",
            "display": "Staphylococcus aureus enterotoxin A + Staphylococcus aureus enterotoxin B DNA [Presence] in Wound by NAA with probe detection"
          },
          {
            "code": "103198-8",
            "display": "Staphylococcus aureus DNA [Presence] in Respiratory system specimen by NAA with probe detection"
          },
          {
            "code": "103601-1",
            "display": "Staphylococcus aureus MLVA type in Isolate or Specimen by Molecular genetics method"
          },
          {
            "code": "104757-0",
            "display": "Staphylococcus aureus DNA [Presence] in Specimen by Molecular genetics method"
          },
          {
            "code": "35492-8",
            "display": "Methicillin resistant Staphylococcus aureus (MRSA) DNA [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code": "44878-7",
            "display": "Staphylococcus aureus enterotoxin A sea gene [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code": "44879-5",
            "display": "Staphylococcus aureus enterotoxin E see gene [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code": "44880-3",
            "display": "Staphylococcus aureus enterotoxin B seb gene [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code": "44881-1",
            "display": "Staphylococcus aureus toxic shock syndrome toxin gene [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code": "48816-3",
            "display": "Staphylococcus aureus Panton-Valentine leukocidin gene [Presence] in Isolate or Specimen by Molecular genetics method"
          },
          {
            "code": "5033-6",
            "display": "Staphylococcus aureus rRNA [Presence] in Specimen by Probe"
          },
          {
            "code": "61404-0",
            "display": "Staphylococcus aureus DNA [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code": "71786-8",
            "display": "Staphylococcus aureus exfoliative toxin A eta gene [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code": "71787-6",
            "display": "Staphylococcus aureus exfoliative toxin B etb gene [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code": "72822-0",
            "display": "Staphylococcus aureus enterotoxin D sed gene [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code": "72823-8",
            "display": "Staphylococcus aureus enterotoxin C sec gene [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code": "75755-9",
            "display": "Methicillin susceptible Staphylococcus aureus DNA [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code": "76577-6",
            "display": "Staphylococcus aureus sau3AI gene [Presence] in Swab specimen by NAA with probe detection"
          },
          {
            "code": "76592-5",
            "display": "Staphylococcus aureus sau3AI gene [#/mass] in XXX.tissue by NAA with probe detection"
          },
          {
            "code": "76605-5",
            "display": "Staphylococcus aureus sau3AI gene [#/volume] in XXX.body fluid by NAA with probe detection"
          },
          {
            "code": "79447-9",
            "display": "Staphylococcus aureus capsular polysaccharide enzyme cpe gene [Presence] in Nose by NAA with probe detection"
          },
          {
            "code": "90001-9",
            "display": "Methicillin resistant Staphylococcus aureus (MRSA) DNA [Presence] in Nose by NAA with probe detection"
          },
          {
            "code": "92701-2",
            "display": "Staphylococcus aureus DNA [Presence] in Nose by NAA with probe detection"
          },
          {
            "code": "92952-1",
            "display": "Staphylococcus aureus DNA [NCncRange] in Sputum by NAA with non-probe detection"
          },
          {
            "code": "92953-9",
            "display": "Staphylococcus aureus DNA [NCncRange] in Bronchoalveolar lavage by NAA with non-probe detection"
          },
          {
            "code": "94369-6",
            "display": "Staphylococcus aureus DNA [Presence] in Lower respiratory specimen by NAA with probe detection"
          },
          {
            "code": "94512-1",
            "display": "Staphylococcus aureus and Methicillin Resistant Staphylococcus aureus identified in Isolate or Specimen by Molecular genetics method"
          },
          {
            "code": "96328-0",
            "display": "Staphylococcus aureus DNA [NCncRange] in Lower respiratory specimen by NAA with non-probe detection"
          },
          {
            "code": "97325-5",
            "display": "Staphylococcus aureus VNTR pattern [Type] in Isolate or Specimen by Molecular genetics method"
          },
          {
            "code": "97634-0",
            "display": "Staphylococcus aureus DNA [Presence] in Synovial fluid by NAA with non-probe detection"
          },
          {
            "code": "99029-1",
            "display": "Staphylococcus aureus DNA [Presence] in Urine by NAA with probe detection"
          }
        ]
      }
    ]
  },
  "expansion": {
    "identifier": "urn:uuid:1a4e4cda-9572-42f1-969f-de3fa610ce00",
    "timestamp": "2025-05-23T18:27:23-04:00",
    "total": 32,
    "contains": [
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "103141-8",
        "display": "Staphylococcus aureus MLVA complex [Type] in Isolate or Specimen by Molecular genetics method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "103163-2",
        "display": "Staphylococcus aureus enterotoxin A + Staphylococcus aureus enterotoxin B DNA [Presence] in Wound by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "103198-8",
        "display": "Staphylococcus aureus DNA [Presence] in Respiratory system specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "103601-1",
        "display": "Staphylococcus aureus MLVA type in Isolate or Specimen by Molecular genetics method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "104757-0",
        "display": "Staphylococcus aureus DNA [Presence] in Specimen by Molecular genetics method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "35492-8",
        "display": "Methicillin resistant Staphylococcus aureus (MRSA) DNA [Presence] in Specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "44878-7",
        "display": "Staphylococcus aureus enterotoxin A sea gene [Presence] in Specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "44879-5",
        "display": "Staphylococcus aureus enterotoxin E see gene [Presence] in Specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "44880-3",
        "display": "Staphylococcus aureus enterotoxin B seb gene [Presence] in Specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "44881-1",
        "display": "Staphylococcus aureus toxic shock syndrome toxin gene [Presence] in Specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "48816-3",
        "display": "Staphylococcus aureus Panton-Valentine leukocidin gene [Presence] in Isolate or Specimen by Molecular genetics method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "5033-6",
        "display": "Staphylococcus aureus rRNA [Presence] in Specimen by Probe"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "61404-0",
        "display": "Staphylococcus aureus DNA [Presence] in Specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "71786-8",
        "display": "Staphylococcus aureus exfoliative toxin A eta gene [Presence] in Specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "71787-6",
        "display": "Staphylococcus aureus exfoliative toxin B etb gene [Presence] in Specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "72822-0",
        "display": "Staphylococcus aureus enterotoxin D sed gene [Presence] in Specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "72823-8",
        "display": "Staphylococcus aureus enterotoxin C sec gene [Presence] in Specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "75755-9",
        "display": "Methicillin susceptible Staphylococcus aureus DNA [Presence] in Specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "76577-6",
        "display": "Staphylococcus aureus sau3AI gene [Presence] in Swab specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "76592-5",
        "display": "Staphylococcus aureus sau3AI gene [#/mass] in XXX.tissue by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "76605-5",
        "display": "Staphylococcus aureus sau3AI gene [#/volume] in XXX.body fluid by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "79447-9",
        "display": "Staphylococcus aureus capsular polysaccharide enzyme cpe gene [Presence] in Nose by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "90001-9",
        "display": "Methicillin resistant Staphylococcus aureus (MRSA) DNA [Presence] in Nose by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "92701-2",
        "display": "Staphylococcus aureus DNA [Presence] in Nose by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "92952-1",
        "display": "Staphylococcus aureus DNA [NCncRange] in Sputum by NAA with non-probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "92953-9",
        "display": "Staphylococcus aureus DNA [NCncRange] in Bronchoalveolar lavage by NAA with non-probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "94369-6",
        "display": "Staphylococcus aureus DNA [Presence] in Lower respiratory specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "94512-1",
        "display": "Staphylococcus aureus and Methicillin Resistant Staphylococcus aureus identified in Isolate or Specimen by Molecular genetics method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "96328-0",
        "display": "Staphylococcus aureus DNA [NCncRange] in Lower respiratory specimen by NAA with non-probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "97325-5",
        "display": "Staphylococcus aureus VNTR pattern [Type] in Isolate or Specimen by Molecular genetics method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "97634-0",
        "display": "Staphylococcus aureus DNA [Presence] in Synovial fluid by NAA with non-probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "99029-1",
        "display": "Staphylococcus aureus DNA [Presence] in Urine by NAA with probe detection"
      }
    ]
  }
}