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Source1

{
  "resourceType": "ValueSet",
  "id": "2.16.840.1.113762.1.4.1146.1409",
  "meta": {
    "versionId": "20",
    "lastUpdated": "2025-02-19T01:09:45.000-05:00",
    "profile": [
      "http://hl7.org/fhir/StructureDefinition/shareablevalueset",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/computable-valueset-cqfm",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/publishable-valueset-cqfm"
    ]
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-author",
      "valueContactDetail": {
        "name": "CSTE Author"
      }
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-keyWord",
      "valueString": "2019nCoV,Trigger"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate",
      "valueDate": "2025-02-19"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate",
      "valueDate": "2025-02-19"
    }
  ],
  "url": "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1409",
  "identifier": [
    {
      "system": "urn:ietf:rfc:3986",
      "value": "urn:oid:2.16.840.1.113762.1.4.1146.1409"
    }
  ],
  "version": "20250219",
  "name": "COVID_19TestsForSARS_CoV_2GenomicSequence",
  "title": "COVID_19 (Tests for SARS_CoV_2 Genomic Sequence)",
  "status": "active",
  "date": "2025-02-19T01:09:45-05:00",
  "publisher": "CSTE Steward",
  "description": "This value set contains some provisional codes created for the COVID-19 response. It may be incomplete, as not all provisional COVID-19 codes are available in VSAC at the time of publication. Please contact the CSTE RCKMS Content Team for a complete list of codes to be included in this value set.",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "urn:iso:std:iso:3166",
          "code": "US"
        }
      ]
    }
  ],
  "purpose": "(Clinical Focus: This set of values contains codes for lab test names that may be ordered or ‘observed’ for detection of SARS-CoV-2 genomic sequence or gene mutation by Molecular genetics method.),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: SARS-like Coronavirus; Coronavirus 2),(Exclusion Criteria: none)",
  "compose": {
    "include": [
      {
        "system": "http://loinc.org",
        "concept": [
          {
            "code": "100156-9",
            "display": "SARS-CoV-2 (COVID-19) variant [Type] in Specimen by NAA with probe detection"
          },
          {
            "code": "100157-7",
            "display": "SARS-CoV-2 (COVID-19) lineage [Type] in Specimen by Sequencing"
          },
          {
            "code": "103557-5",
            "display": "SARS-CoV-2 (COVID-19) Mpro gene mutation detected [Identifier] in Specimen by Molecular genetics method Nominal"
          },
          {
            "code": "94764-8",
            "display": "SARS-CoV-2 (COVID-19) whole genome [Nucleotide sequence] in Isolate or Specimen by Sequencing"
          },
          {
            "code": "96741-4",
            "display": "SARS-CoV-2 (COVID-19) variant [Type] in Specimen by Sequencing"
          },
          {
            "code": "96751-3",
            "display": "SARS-CoV-2 (COVID-19) S gene mutation detected [Identifier] in Specimen by Molecular genetics method"
          },
          {
            "code": "96752-1",
            "display": "SARS-CoV-2 (COVID-19) S gene mutation [Presence] in Specimen by Molecular genetics method"
          },
          {
            "code": "96755-4",
            "display": "SARS-CoV-2 (COVID-19) variant interpretation in Specimen Narrative"
          },
          {
            "code": "96895-8",
            "display": "SARS-CoV-2 (COVID-19) lineage [Identifier] in Specimen by Molecular genetics method"
          },
          {
            "code": "96896-6",
            "display": "SARS-CoV-2 (COVID-19) clade [Type] in Specimen by Molecular genetics method"
          },
          {
            "code": "99314-7",
            "display": "SARS-CoV-2 (COVID-19) RdRp gene mutation detected [Identifier] in Specimen by Molecular genetics method"
          }
        ]
      }
    ]
  },
  "expansion": {
    "identifier": "urn:uuid:fd93a2f8-1e59-48c9-8621-b7c30c721b0a",
    "timestamp": "2025-05-23T18:26:59-04:00",
    "total": 11,
    "contains": [
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "100156-9",
        "display": "SARS-CoV-2 (COVID-19) variant [Type] in Specimen by NAA with probe detection"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "100157-7",
        "display": "SARS-CoV-2 (COVID-19) lineage [Type] in Specimen by Sequencing"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "103557-5",
        "display": "SARS-CoV-2 (COVID-19) Mpro gene mutation detected [Identifier] in Specimen by Molecular genetics method Nominal"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "94764-8",
        "display": "SARS-CoV-2 (COVID-19) whole genome [Nucleotide sequence] in Isolate or Specimen by Sequencing"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "96741-4",
        "display": "SARS-CoV-2 (COVID-19) variant [Type] in Specimen by Sequencing"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "96751-3",
        "display": "SARS-CoV-2 (COVID-19) S gene mutation detected [Identifier] in Specimen by Molecular genetics method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "96752-1",
        "display": "SARS-CoV-2 (COVID-19) S gene mutation [Presence] in Specimen by Molecular genetics method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "96755-4",
        "display": "SARS-CoV-2 (COVID-19) variant interpretation in Specimen Narrative"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "96895-8",
        "display": "SARS-CoV-2 (COVID-19) lineage [Identifier] in Specimen by Molecular genetics method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "96896-6",
        "display": "SARS-CoV-2 (COVID-19) clade [Type] in Specimen by Molecular genetics method"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "99314-7",
        "display": "SARS-CoV-2 (COVID-19) RdRp gene mutation detected [Identifier] in Specimen by Molecular genetics method"
      }
    ]
  }
}