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Packageus.nlm.vsac
Resource TypeValueSet
IdValueSet-2.16.840.1.113762.1.4.1146.1304.json
FHIR VersionR4
Sourcehttps://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.1304/expansion
URLhttp://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1304
Version20250218
Statusactive
Date2025-02-18T01:09:31-05:00
NameMycobacteria_Infection_NonTB_ExPulmTestsForMycobacteriumSpeciesInExtrapulmonarySpecimenByCultureAndIdentificationMethod
TitleMycobacteria_Infection_NonTB_ExPulm (Tests for Mycobacterium species in Extrapulmonary Specimen by Culture and Identification Method)
Realmus
Authorityhl7
Purpose(Clinical Focus: This set of values contains codes for laboratory test names associated with Extrapulmonary Nontuberculous Mycobacteria Infection identified by Culture and Identification Method.),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: mycobacterium species (culture or isolate)),(Exclusion Criteria: -complex -respiratory -sputum -bronchoalveolar -bronchial -stool)

Resources that use this resource

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Resources that this resource uses

CodeSystem
loinc.orgLOINC codes used in this IG

Narrative

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Source1

{
  "resourceType": "ValueSet",
  "id": "2.16.840.1.113762.1.4.1146.1304",
  "meta": {
    "versionId": "19",
    "lastUpdated": "2025-02-18T01:09:30.000-05:00",
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  "extension": [
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      "valueContactDetail": {
        "name": "CSTE Author"
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    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-keyWord",
      "valueString": "MycoNonTBExPulm,Trigger"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate",
      "valueDate": "2025-02-18"
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      "valueDate": "2025-02-18"
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  "url": "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1304",
  "identifier": [
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  ],
  "version": "20250218",
  "name": "Mycobacteria_Infection_NonTB_ExPulmTestsForMycobacteriumSpeciesInExtrapulmonarySpecimenByCultureAndIdentificationMethod",
  "title": "Mycobacteria_Infection_NonTB_ExPulm (Tests for Mycobacterium species in Extrapulmonary Specimen by Culture and Identification Method)",
  "status": "active",
  "date": "2025-02-18T01:09:31-05:00",
  "publisher": "CSTE Steward",
  "jurisdiction": [
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          "code": "US"
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  "compose": {
    "include": [
      {
        "system": "http://loinc.org",
        "concept": [
          {
            "code": "105224-0",
            "display": "Mycobacterium sp identified in Pericardial fluid by Organism specific culture"
          },
          {
            "code": "105225-7",
            "display": "Mycobacterium sp identified in Pus by Organism specific culture"
          },
          {
            "code": "105926-0",
            "display": "Mycobacterium sp identified in Stool by Organism specific culture"
          },
          {
            "code": "42716-1",
            "display": "Mycobacterium sp rRNA [Identifier] in Isolate by NAA with probe detection"
          },
          {
            "code": "44851-4",
            "display": "Mycobacterium sp # 2 identified in Specimen by Organism specific culture"
          },
          {
            "code": "44852-2",
            "display": "Mycobacterium sp # 3 identified in Specimen by Organism specific culture"
          },
          {
            "code": "44854-8",
            "display": "Mycobacterium sp # 4 identified in Specimen by Organism specific culture"
          },
          {
            "code": "44855-5",
            "display": "Mycobacterium sp # 5 identified in Specimen by Organism specific culture"
          },
          {
            "code": "50941-4",
            "display": "Mycobacterium sp [Presence] in Specimen by Organism specific culture"
          },
          {
            "code": "532-2",
            "display": "Mycobacterium sp identified in Aspirate by Organism specific culture"
          },
          {
            "code": "533-0",
            "display": "Mycobacterium sp identified in Blood by Organism specific culture"
          },
          {
            "code": "534-8",
            "display": "Mycobacterium sp identified in Cerebral spinal fluid by Organism specific culture"
          },
          {
            "code": "535-5",
            "display": "Mycobacterium sp identified in Body fluid by Organism specific culture"
          },
          {
            "code": "536-3",
            "display": "Mycobacterium sp identified in Bone marrow by Organism specific culture"
          },
          {
            "code": "537-1",
            "display": "Mycobacterium sp identified in Peritoneal fluid by Organism specific culture"
          },
          {
            "code": "538-9",
            "display": "Mycobacterium sp identified in Synovial fluid by Organism specific culture"
          },
          {
            "code": "53909-8",
            "display": "Mycobacterium sp identified in Pleural fluid by Organism specific culture"
          },
          {
            "code": "540-5",
            "display": "Mycobacterium sp identified in Tissue by Organism specific culture"
          },
          {
            "code": "541-3",
            "display": "Mycobacterium sp identified in Urine by Organism specific culture"
          },
          {
            "code": "542-1",
            "display": "Mycobacterium sp identified in Wound by Organism specific culture"
          },
          {
            "code": "543-9",
            "display": "Mycobacterium sp identified in Specimen by Organism specific culture"
          },
          {
            "code": "64412-0",
            "display": "Mycobacterium sp [Presence] in Blood by Organism specific culture"
          },
          {
            "code": "67725-2",
            "display": "Mycobacterium sp identified in Isolate by HPLC"
          },
          {
            "code": "88167-2",
            "display": "Mycobacterium sp identified in Cornea or Conjunctiva by Organism specific culture"
          },
          {
            "code": "88168-0",
            "display": "Mycobacterium sp identified in Ocular fluid by Organism specific culture"
          },
          {
            "code": "88183-9",
            "display": "Mycobacterium sp identified in Isolate by Sequencing"
          },
          {
            "code": "88266-2",
            "display": "Mycobacterium sp rRNA [Identifier] by Probe in Positive blood culture"
          },
          {
            "code": "89637-3",
            "display": "Mycobacterium sp identified in Implanted device by Organism specific culture"
          },
          {
            "code": "90284-1",
            "display": "Mycobacterium sp identified in Bile fluid by Organism specific culture"
          },
          {
            "code": "90438-3",
            "display": "Mycobacterium preliminary growth [Presence] in Tissue by Organism specific culture"
          },
          {
            "code": "91590-0",
            "display": "Mycobacterium preliminary growth [Presence] in Body fluid by Organism specific culture"
          },
          {
            "code": "9824-4",
            "display": "Mycobacterium sp identified in Gastric fluid by Organism specific culture"
          },
          {
            "code": "9825-1",
            "display": "Mycobacterium sp identified in Isolate"
          }
        ]
      }
    ]
  },
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    "identifier": "urn:uuid:ae74e4d2-c49b-4b61-88ab-9e7f753d73a0",
    "timestamp": "2025-05-23T18:25:28-04:00",
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      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "105224-0",
        "display": "Mycobacterium sp identified in Pericardial fluid by Organism specific culture"
      },
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      },
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        "version": "2.80",
        "code": "44855-5",
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        "version": "2.80",
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        "display": "Mycobacterium sp [Presence] in Specimen by Organism specific culture"
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        "code": "532-2",
        "display": "Mycobacterium sp identified in Aspirate by Organism specific culture"
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      {
        "system": "http://loinc.org",
        "version": "2.80",
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        "display": "Mycobacterium sp identified in Blood by Organism specific culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "534-8",
        "display": "Mycobacterium sp identified in Cerebral spinal fluid by Organism specific culture"
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        "version": "2.80",
        "code": "535-5",
        "display": "Mycobacterium sp identified in Body fluid by Organism specific culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "536-3",
        "display": "Mycobacterium sp identified in Bone marrow by Organism specific culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "537-1",
        "display": "Mycobacterium sp identified in Peritoneal fluid by Organism specific culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "538-9",
        "display": "Mycobacterium sp identified in Synovial fluid by Organism specific culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "53909-8",
        "display": "Mycobacterium sp identified in Pleural fluid by Organism specific culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "540-5",
        "display": "Mycobacterium sp identified in Tissue by Organism specific culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "541-3",
        "display": "Mycobacterium sp identified in Urine by Organism specific culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "542-1",
        "display": "Mycobacterium sp identified in Wound by Organism specific culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "543-9",
        "display": "Mycobacterium sp identified in Specimen by Organism specific culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "64412-0",
        "display": "Mycobacterium sp [Presence] in Blood by Organism specific culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "67725-2",
        "display": "Mycobacterium sp identified in Isolate by HPLC"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "88167-2",
        "display": "Mycobacterium sp identified in Cornea or Conjunctiva by Organism specific culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "88168-0",
        "display": "Mycobacterium sp identified in Ocular fluid by Organism specific culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "88183-9",
        "display": "Mycobacterium sp identified in Isolate by Sequencing"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "88266-2",
        "display": "Mycobacterium sp rRNA [Identifier] by Probe in Positive blood culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "89637-3",
        "display": "Mycobacterium sp identified in Implanted device by Organism specific culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "90284-1",
        "display": "Mycobacterium sp identified in Bile fluid by Organism specific culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "90438-3",
        "display": "Mycobacterium preliminary growth [Presence] in Tissue by Organism specific culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "91590-0",
        "display": "Mycobacterium preliminary growth [Presence] in Body fluid by Organism specific culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "9824-4",
        "display": "Mycobacterium sp identified in Gastric fluid by Organism specific culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "9825-1",
        "display": "Mycobacterium sp identified in Isolate"
      }
    ]
  }
}