FHIR IG analytics
| Package | us.nlm.vsac |
| Resource Type | ValueSet |
| Id | ValueSet-2.16.840.1.113762.1.4.1146.1142.json |
| FHIR Version | R4 |
| Source | https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.1142/expansion |
| URL | http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1142 |
| Version | 20250218 |
| Status | active |
| Date | 2025-02-18T01:09:31-05:00 |
| Name | COVID_19TestsForSARS_CoV_2NucleicAcid |
| Title | COVID_19 (Tests for SARS_CoV_2 Nucleic Acid) |
| Realm | us |
| Authority | hl7 |
| Description | This value set contains some provisional codes created for the COVID-19 response. It may be incomplete, as not all provisional COVID-19 codes are available in VSAC at the time of publication. Please contact the CSTE RCKMS Content Team for a complete list of codes to be included in this value set. |
| Purpose | (Clinical Focus: This set of values contains codes for laboratory test names associated with detecting the presence of SARS_CoV_2 Nucleic Acid),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: SARS-like Coronavirus; Coronavirus 2),(Exclusion Criteria: none) |
Resources that use this resource
Resources that this resource uses
| CodeSystem |
| loinc.org | LOINC codes used in this IG |
Narrative
No narrative content found in resource
Source1
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"valueString": "2019nCoV,Trigger"
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"valueDate": "2025-02-18"
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"identifier": [
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"version": "20250218",
"name": "COVID_19TestsForSARS_CoV_2NucleicAcid",
"title": "COVID_19 (Tests for SARS_CoV_2 Nucleic Acid)",
"status": "active",
"date": "2025-02-18T01:09:31-05:00",
"publisher": "CSTE Steward",
"description": "This value set contains some provisional codes created for the COVID-19 response. It may be incomplete, as not all provisional COVID-19 codes are available in VSAC at the time of publication. Please contact the CSTE RCKMS Content Team for a complete list of codes to be included in this value set.",
"jurisdiction": [
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"purpose": "(Clinical Focus: This set of values contains codes for laboratory test names associated with detecting the presence of SARS_CoV_2 Nucleic Acid),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: SARS-like Coronavirus; Coronavirus 2),(Exclusion Criteria: none)",
"compose": {
"include": [
{
"system": "http://loinc.org",
"concept": [
{
"code": "101289-7",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Throat by NAA with non-probe detection"
},
{
"code": "104451-0",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen"
},
{
"code": "94307-6",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N1"
},
{
"code": "94308-4",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N2"
},
{
"code": "94309-2",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Specimen by NAA with probe detection"
},
{
"code": "94311-8",
"display": "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by Nucleic acid amplification using CDC primer-probe set N1"
},
{
"code": "94312-6",
"display": "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by Nucleic acid amplification using CDC primer-probe set N2"
},
{
"code": "94314-2",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Specimen by NAA with probe detection"
},
{
"code": "94316-7",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by NAA with probe detection"
},
{
"code": "94500-6",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94510-5",
"display": "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by NAA with probe detection"
},
{
"code": "94511-3",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Cycle Threshold #] in Specimen by NAA with probe detection"
},
{
"code": "94533-7",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94534-5",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94559-2",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94565-9",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with non-probe detection"
},
{
"code": "94639-2",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Specimen by NAA with probe detection"
},
{
"code": "94640-0",
"display": "SARS-CoV-2 (COVID-19) S gene [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94641-8",
"display": "SARS-CoV-2 (COVID-19) S gene [Presence] in Specimen by NAA with probe detection"
},
{
"code": "94642-6",
"display": "SARS-CoV-2 (COVID-19) S gene [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94643-4",
"display": "SARS-CoV-2 (COVID-19) S gene [Cycle Threshold #] in Specimen by NAA with probe detection"
},
{
"code": "94644-2",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94645-9",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Cycle Threshold #] in Specimen by NAA with probe detection"
},
{
"code": "94646-7",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94660-8",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Serum or Plasma by NAA with probe detection"
},
{
"code": "94745-7",
"display": "SARS-CoV-2 (COVID-19) RNA [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "94746-5",
"display": "SARS-CoV-2 (COVID-19) RNA [Cycle Threshold #] in Specimen by NAA with probe detection"
},
{
"code": "94756-4",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory system specimen by Nucleic acid amplification using CDC primer-probe set N1"
},
{
"code": "94757-2",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory system specimen by Nucleic acid amplification using CDC primer-probe set N2"
},
{
"code": "94759-8",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection"
},
{
"code": "94760-6",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Nasopharynx by NAA with probe detection"
},
{
"code": "94766-3",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Serum or Plasma by NAA with probe detection"
},
{
"code": "94767-1",
"display": "SARS-CoV-2 (COVID-19) S gene [Presence] in Serum or Plasma by NAA with probe detection"
},
{
"code": "94819-0",
"display": "SARS-CoV-2 (COVID-19) RNA [Log #/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"code": "94822-4",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Saliva (oral fluid) by Sequencing"
},
{
"code": "94845-5",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Saliva (oral fluid) by NAA with probe detection"
},
{
"code": "95406-5",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Nose by NAA with probe detection"
},
{
"code": "95409-9",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Nose by NAA with probe detection"
},
{
"code": "95424-8",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by Sequencing"
},
{
"code": "95425-5",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Saliva (oral fluid) by NAA with probe detection"
},
{
"code": "95521-1",
"display": "SARS-CoV-2 (COVID-19) N gene [#/volume] (viral load) in Respiratory system specimen by NAA with probe detection"
},
{
"code": "95522-9",
"display": "SARS-CoV-2 (COVID-19) N gene [Log #/volume] (viral load) in Respiratory system specimen by NAA with probe detection"
},
{
"code": "95608-6",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with non-probe detection"
},
{
"code": "95609-4",
"display": "SARS-CoV-2 (COVID-19) S gene [Presence] in Respiratory system specimen by Sequencing"
},
{
"code": "95824-9",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Saliva (oral fluid) by NAA with probe detection"
},
{
"code": "95970-0",
"display": "SARS-CoV-2 (COVID-19) specific TCRB gene rearrangements [Presence] in Blood by Sequencing"
},
{
"code": "96091-4",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Saliva (oral fluid) by NAA with probe detection"
},
{
"code": "96120-1",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Lower respiratory specimen by NAA with probe detection"
},
{
"code": "96123-5",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Upper respiratory specimen by NAA with probe detection"
},
{
"code": "96448-6",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Saliva (oral fluid) by Nucleic acid amplification using CDC primer-probe set N1"
},
{
"code": "96756-2",
"display": "SARS-CoV-2 (COVID-19) S gene codon N501= [Presence] in Specimen by Molecular genetics method"
},
{
"code": "96757-0",
"display": "SARS-CoV-2 (COVID-19) S gene codon N501Y [Presence] in Specimen by Molecular genetics method"
},
{
"code": "96763-8",
"display": "SARS-CoV-2 (COVID-19) E gene [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "96764-6",
"display": "SARS-CoV-2 (COVID-19) E gene [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "96765-3",
"display": "SARS-CoV-2 (COVID-19) S gene [Presence] in Saliva (oral fluid) by NAA with probe detection"
},
{
"code": "96797-6",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Oropharyngeal wash by NAA with probe detection"
},
{
"code": "96829-7",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Specimen from Donor by NAA with probe detection"
},
{
"code": "96898-2",
"display": "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Oropharyngeal wash by NAA with probe detection"
},
{
"code": "96899-0",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Cycle Threshold #] in Oropharyngeal wash by NAA with probe detection"
},
{
"code": "96900-6",
"display": "SARS-CoV-2 (COVID-19) S gene [Cycle Threshold #] in Oropharyngeal wash by NAA with probe detection"
},
{
"code": "96957-6",
"display": "SARS-CoV-2 (COVID-19) M gene [Presence] in Upper respiratory specimen by NAA with probe detection"
},
{
"code": "96958-4",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Saliva (oral fluid) by Nucleic acid amplification using CDC primer-probe set N2"
},
{
"code": "96986-5",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Nose by NAA with non-probe detection"
},
{
"code": "97098-8",
"display": "SARS-CoV-2 (COVID-19) Nsp2 gene [Presence] in Upper respiratory specimen by NAA with probe detection"
},
{
"code": "97104-4",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Units/volume] (viral load) in Upper respiratory specimen by NAA with probe detection"
},
{
"code": "98131-6",
"display": "SARS-CoV-2 (COVID-19) ORF1b region [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "98132-4",
"display": "SARS-CoV-2 (COVID-19) ORF1a region [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"code": "98493-0",
"display": "SARS-CoV-2 (COVID-19) ORF1b region [Presence] in Saliva (oral fluid) by NAA with probe detection"
},
{
"code": "98494-8",
"display": "SARS-CoV-2 (COVID-19) ORF1a region [Presence] in Saliva (oral fluid) by NAA with probe detection"
}
]
}
]
},
"expansion": {
"identifier": "urn:uuid:c55624f9-c642-4ac4-a1f1-510265ba428d",
"timestamp": "2025-05-23T18:23:53-04:00",
"total": 69,
"contains": [
{
"system": "http://loinc.org",
"version": "2.80",
"code": "101289-7",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Throat by NAA with non-probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "104451-0",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94307-6",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N1"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94308-4",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N2"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94309-2",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94311-8",
"display": "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by Nucleic acid amplification using CDC primer-probe set N1"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94312-6",
"display": "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by Nucleic acid amplification using CDC primer-probe set N2"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94314-2",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94316-7",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94500-6",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94510-5",
"display": "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94511-3",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Cycle Threshold #] in Specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94533-7",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94534-5",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94559-2",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94565-9",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with non-probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94639-2",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
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"display": "SARS-CoV-2 (COVID-19) S gene [Presence] in Respiratory system specimen by NAA with probe detection"
},
{
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"version": "2.80",
"code": "94641-8",
"display": "SARS-CoV-2 (COVID-19) S gene [Presence] in Specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94642-6",
"display": "SARS-CoV-2 (COVID-19) S gene [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94643-4",
"display": "SARS-CoV-2 (COVID-19) S gene [Cycle Threshold #] in Specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94644-2",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94645-9",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Cycle Threshold #] in Specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94646-7",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94660-8",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Serum or Plasma by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94745-7",
"display": "SARS-CoV-2 (COVID-19) RNA [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94746-5",
"display": "SARS-CoV-2 (COVID-19) RNA [Cycle Threshold #] in Specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94756-4",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory system specimen by Nucleic acid amplification using CDC primer-probe set N1"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94757-2",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory system specimen by Nucleic acid amplification using CDC primer-probe set N2"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94759-8",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94760-6",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Nasopharynx by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94766-3",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Serum or Plasma by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94767-1",
"display": "SARS-CoV-2 (COVID-19) S gene [Presence] in Serum or Plasma by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94819-0",
"display": "SARS-CoV-2 (COVID-19) RNA [Log #/volume] (viral load) in Specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94822-4",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Saliva (oral fluid) by Sequencing"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94845-5",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Saliva (oral fluid) by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "95406-5",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Nose by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "95409-9",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Nose by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "95424-8",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by Sequencing"
},
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}
FHIR
FHIRsmith