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Packageus.nlm.vsac
Resource TypeValueSet
IdValueSet-2.16.840.1.113762.1.4.1146.1040.json
FHIR VersionR4
Sourcehttps://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.1040/expansion
URLhttp://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1040
Version20250219
Statusactive
Date2025-02-19T01:09:45-05:00
NameOrganismsTestsByUnspecifiedMethod
TitleOrganisms (Tests by Unspecified Method)
Realmus
Authorityhl7
Purpose(Clinical Focus: This set of values contains codes for laboratory test names associated with organism identified by an unspecified specimen or method.),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: VSAC search: 41852-5 Microorganism or agent identified in Unspecified specimen 23667-9 Bacteria identified in Unspecified specimen (Unclear why this didn't show up in search; probably because the culture method isn't identified) 23207-4 Leptospira subtype [Identifier] in Unspecified specimen 70172-2 Neisseria meningitidis serogroup [Identifier] in Unspecified specimen 40699-1 Mycobacterium sp identified in Unspecified specimen),(Exclusion Criteria: None)

Resources that use this resource

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Resources that this resource uses

CodeSystem
loinc.orgLOINC codes used in this IG

Narrative

No narrative content found in resource


Source1

{
  "resourceType": "ValueSet",
  "id": "2.16.840.1.113762.1.4.1146.1040",
  "meta": {
    "versionId": "14",
    "lastUpdated": "2025-02-19T01:09:45.000-05:00",
    "profile": [
      "http://hl7.org/fhir/StructureDefinition/shareablevalueset",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/computable-valueset-cqfm",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/publishable-valueset-cqfm"
    ]
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-author",
      "valueContactDetail": {
        "name": "CSTE Author"
      }
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-keyWord",
      "valueString": "G_Common"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate",
      "valueDate": "2025-02-19"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate",
      "valueDate": "2025-02-19"
    }
  ],
  "url": "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1040",
  "identifier": [
    {
      "system": "urn:ietf:rfc:3986",
      "value": "urn:oid:2.16.840.1.113762.1.4.1146.1040"
    }
  ],
  "version": "20250219",
  "name": "OrganismsTestsByUnspecifiedMethod",
  "title": "Organisms (Tests by Unspecified Method)",
  "status": "active",
  "date": "2025-02-19T01:09:45-05:00",
  "publisher": "CSTE Steward",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "urn:iso:std:iso:3166",
          "code": "US"
        }
      ]
    }
  ],
  "purpose": "(Clinical Focus: This set of values contains codes for laboratory test names associated with organism identified by an unspecified specimen or method.),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: VSAC search: \n41852-5 Microorganism or agent identified in Unspecified specimen\n23667-9 Bacteria identified in Unspecified specimen (Unclear why this didn't show up in search; probably because the culture method isn't identified)\n23207-4 Leptospira subtype [Identifier] in Unspecified specimen\n70172-2 Neisseria meningitidis serogroup [Identifier] in Unspecified specimen\n40699-1 Mycobacterium sp identified in Unspecified specimen),(Exclusion Criteria: None)",
  "compose": {
    "include": [
      {
        "system": "http://loinc.org",
        "concept": [
          {
            "code": "104742-2",
            "display": "Ova and parasites identified in Specimen"
          },
          {
            "code": "105064-0",
            "display": "Staphylococcus sp identified in Specimen"
          },
          {
            "code": "20797-7",
            "display": "Endotoxin identified in Specimen"
          },
          {
            "code": "23207-4",
            "display": "Leptospira subtype [Identifier] in Specimen"
          },
          {
            "code": "23667-9",
            "display": "Bacteria identified in Specimen"
          },
          {
            "code": "38401-6",
            "display": "Protozoa identified in Specimen"
          },
          {
            "code": "40698-3",
            "display": "Mycoplasma sp identified in Specimen"
          },
          {
            "code": "40699-1",
            "display": "Mycobacterium sp identified in Specimen"
          },
          {
            "code": "41454-0",
            "display": "Human coronavirus identified in Specimen"
          },
          {
            "code": "41461-5",
            "display": "Virus identified in Specimen"
          },
          {
            "code": "41852-5",
            "display": "Microorganism or agent identified in Specimen"
          },
          {
            "code": "42805-2",
            "display": "Fungus identified in Specimen"
          },
          {
            "code": "54244-9",
            "display": "Influenza virus identified in Specimen"
          },
          {
            "code": "67867-2",
            "display": "Babesia sp identified in Specimen"
          },
          {
            "code": "70172-2",
            "display": "Neisseria meningitidis serogroup [Identifier] in Specimen"
          },
          {
            "code": "81658-7",
            "display": "Suspected organism [Identifier] in Specimen"
          }
        ]
      }
    ]
  },
  "expansion": {
    "identifier": "urn:uuid:d93d79ec-d149-4b83-84a9-392984409fbb",
    "timestamp": "2025-05-23T18:22:55-04:00",
    "total": 16,
    "contains": [
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "104742-2",
        "display": "Ova and parasites identified in Specimen"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "105064-0",
        "display": "Staphylococcus sp identified in Specimen"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "20797-7",
        "display": "Endotoxin identified in Specimen"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "23207-4",
        "display": "Leptospira subtype [Identifier] in Specimen"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "23667-9",
        "display": "Bacteria identified in Specimen"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "38401-6",
        "display": "Protozoa identified in Specimen"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "40698-3",
        "display": "Mycoplasma sp identified in Specimen"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "40699-1",
        "display": "Mycobacterium sp identified in Specimen"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "41454-0",
        "display": "Human coronavirus identified in Specimen"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "41461-5",
        "display": "Virus identified in Specimen"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "41852-5",
        "display": "Microorganism or agent identified in Specimen"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "42805-2",
        "display": "Fungus identified in Specimen"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "54244-9",
        "display": "Influenza virus identified in Specimen"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "67867-2",
        "display": "Babesia sp identified in Specimen"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "70172-2",
        "display": "Neisseria meningitidis serogroup [Identifier] in Specimen"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "81658-7",
        "display": "Suspected organism [Identifier] in Specimen"
      }
    ]
  }
}