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FHIR IG Statistics: ValueSet/2.16.840.1.113762.1.4.1146.2380

Packageus.nlm.vsac
Resource TypeValueSet
Id2.16.840.1.113762.1.4.1146.2380
FHIR VersionR4
Sourcehttp://fhir.org/packages/us.nlm.vsac/https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.2380/expansion
URLhttp://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.2380
Version20240619
Statusactive
Date2024-06-19T01:24:12-04:00
NameOrganismsTestsInSpecimenFromNonsterileSiteByCultureAndIdentification
TitleOrganisms (Tests in Specimen from Nonsterile Site by Culture and Identification)
Realmus
Authorityhl7
Purpose(Clinical Focus: This set of values contains codes for laboratory test names associated with detecting the presence of organisms from Nonsterile Site by Culture and Identification),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: bacteria, virus, fungus, culture),(Exclusion Criteria: sterile specimen source)

Resources that use this resource

No resources found


Resources that this resource uses

CodeSystem
loinc.orgLOINC Code System

Narrative

No narrative content found in resource


Source

{
  "resourceType": "ValueSet",
  "id": "2.16.840.1.113762.1.4.1146.2380",
  "meta": {
    "versionId": "6",
    "lastUpdated": "2024-06-19T01:24:11.000-04:00",
    "profile": [
      "http://hl7.org/fhir/StructureDefinition/shareablevalueset",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/computable-valueset-cqfm",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/publishable-valueset-cqfm"
    ]
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-author",
      "valueContactDetail": {
        "name": "CSTE Author"
      }
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-keyWord",
      "valueString": "G_Common"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate",
      "valueDate": "2024-06-19"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate",
      "valueDate": "2024-06-19"
    }
  ],
  "url": "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.2380",
  "identifier": [
    {
      "system": "urn:ietf:rfc:3986",
      "value": "urn:oid:2.16.840.1.113762.1.4.1146.2380"
    }
  ],
  "version": "20240619",
  "name": "OrganismsTestsInSpecimenFromNonsterileSiteByCultureAndIdentification",
  "title": "Organisms (Tests in Specimen from Nonsterile Site by Culture and Identification)",
  "status": "active",
  "date": "2024-06-19T01:24:12-04:00",
  "publisher": "CSTE Steward",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "urn:iso:std:iso:3166",
          "code": "US"
        }
      ]
    }
  ],
  "purpose": "(Clinical Focus: This set of values contains codes for laboratory test names associated with detecting the presence of organisms from Nonsterile Site by Culture and Identification),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: bacteria, virus, fungus, culture),(Exclusion Criteria: sterile specimen source)",
  "compose": {
    "include": [
      {
        "system": "http://loinc.org",
        "concept": [
          {
            "code": "10352-3",
            "display": "Bacteria identified in Genital specimen by Aerobe culture"
          },
          {
            "code": "10353-1",
            "display": "Bacteria identified in Nose by Aerobe culture"
          },
          {
            "code": "10354-9",
            "display": "Bacteria identified in Urethra by Culture"
          },
          {
            "code": "11261-5",
            "display": "Bacteria identified in Vaginal fluid by Aerobe culture"
          },
          {
            "code": "12281-2",
            "display": "Bacteria identified in Cervix by Anaerobe culture"
          },
          {
            "code": "13315-7",
            "display": "Bacteria identified in 24 hour Urine by Culture"
          },
          {
            "code": "14093-9",
            "display": "Bacteria identified in Water by Culture"
          },
          {
            "code": "14451-9",
            "display": "Virus identified in Eye by Culture"
          },
          {
            "code": "14452-7",
            "display": "Virus identified in Cervix by Culture"
          },
          {
            "code": "14453-5",
            "display": "Virus identified in Vaginal fluid by Culture"
          },
          {
            "code": "14454-3",
            "display": "Virus identified in Nose by Culture"
          },
          {
            "code": "14457-6",
            "display": "Virus identified in Urine by Culture"
          },
          {
            "code": "14458-4",
            "display": "Virus identified in Sputum by Culture"
          },
          {
            "code": "14459-2",
            "display": "Virus identified in Penis by Culture"
          },
          {
            "code": "14460-0",
            "display": "Virus identified in Urethra by Culture"
          },
          {
            "code": "14475-8",
            "display": "Bacteria identified in Cervix by Aerobe culture"
          },
          {
            "code": "14477-4",
            "display": "Bacteria identified in Urethra by Aerobe culture"
          },
          {
            "code": "14478-2",
            "display": "Bacteria identified in Penis by Aerobe culture"
          },
          {
            "code": "17878-0",
            "display": "Bacteria # 2 identified in Bronchial specimen by Aerobe culture"
          },
          {
            "code": "17879-8",
            "display": "Bacteria # 3 identified in Bronchial specimen by Aerobe culture"
          },
          {
            "code": "17880-6",
            "display": "Bacteria # 4 identified in Bronchial specimen by Aerobe culture"
          },
          {
            "code": "17881-4",
            "display": "Bacteria # 5 identified in Bronchial specimen by Aerobe culture"
          },
          {
            "code": "17882-2",
            "display": "Bacteria # 6 identified in Bronchial specimen by Aerobe culture"
          },
          {
            "code": "17883-0",
            "display": "Bacteria # 2 identified in Genital specimen by Aerobe culture"
          },
          {
            "code": "17884-8",
            "display": "Bacteria # 3 identified in Genital specimen by Aerobe culture"
          },
          {
            "code": "17885-5",
            "display": "Bacteria # 4 identified in Genital specimen by Aerobe culture"
          },
          {
            "code": "17886-3",
            "display": "Bacteria # 5 identified in Genital specimen by Aerobe culture"
          },
          {
            "code": "17887-1",
            "display": "Bacteria # 6 identified in Genital specimen by Aerobe culture"
          },
          {
            "code": "17888-9",
            "display": "Bacteria # 2 identified in Nose by Aerobe culture"
          },
          {
            "code": "17889-7",
            "display": "Bacteria # 3 identified in Nose by Aerobe culture"
          },
          {
            "code": "17890-5",
            "display": "Bacteria # 4 identified in Nose by Aerobe culture"
          },
          {
            "code": "17891-3",
            "display": "Bacteria # 5 identified in Nose by Aerobe culture"
          },
          {
            "code": "17892-1",
            "display": "Bacteria # 6 identified in Nose by Aerobe culture"
          },
          {
            "code": "17893-9",
            "display": "Bacteria # 2 identified in Sputum by Aerobe culture"
          },
          {
            "code": "17894-7",
            "display": "Bacteria # 3 identified in Sputum by Aerobe culture"
          },
          {
            "code": "17895-4",
            "display": "Bacteria # 4 identified in Sputum by Aerobe culture"
          },
          {
            "code": "17896-2",
            "display": "Bacteria # 5 identified in Sputum by Aerobe culture"
          },
          {
            "code": "17897-0",
            "display": "Bacteria # 6 identified in Sputum by Aerobe culture"
          },
          {
            "code": "17898-8",
            "display": "Bacteria identified in Throat by Aerobe culture"
          },
          {
            "code": "17899-6",
            "display": "Bacteria # 2 identified in Throat by Aerobe culture"
          },
          {
            "code": "17900-2",
            "display": "Bacteria # 3 identified in Throat by Aerobe culture"
          },
          {
            "code": "17901-0",
            "display": "Bacteria # 4 identified in Throat by Aerobe culture"
          },
          {
            "code": "17902-8",
            "display": "Bacteria # 5 identified in Throat by Aerobe culture"
          },
          {
            "code": "17903-6",
            "display": "Bacteria # 6 identified in Throat by Aerobe culture"
          },
          {
            "code": "17909-3",
            "display": "Bacteria identified in Wound deep by Aerobe culture"
          },
          {
            "code": "17910-1",
            "display": "Bacteria # 2 identified in Wound deep by Aerobe culture"
          },
          {
            "code": "17911-9",
            "display": "Bacteria # 3 identified in Wound deep by Aerobe culture"
          },
          {
            "code": "17912-7",
            "display": "Bacteria # 4 identified in Wound deep by Aerobe culture"
          },
          {
            "code": "17914-3",
            "display": "Bacteria # 6 identified in Wound deep by Aerobe culture"
          },
          {
            "code": "17915-0",
            "display": "Bacteria identified in Wound shallow by Aerobe culture"
          },
          {
            "code": "17916-8",
            "display": "Bacteria # 2 identified in Wound shallow by Aerobe culture"
          },
          {
            "code": "17917-6",
            "display": "Bacteria # 3 identified in Wound shallow by Aerobe culture"
          },
          {
            "code": "17918-4",
            "display": "Bacteria # 4 identified in Wound shallow by Aerobe culture"
          },
          {
            "code": "17919-2",
            "display": "Bacteria # 5 identified in Wound shallow by Aerobe culture"
          },
          {
            "code": "17920-0",
            "display": "Bacteria # 6 identified in Wound shallow by Aerobe culture"
          },
          {
            "code": "17921-8",
            "display": "Bacteria # 2 identified in Nose by Anaerobe culture"
          },
          {
            "code": "17922-6",
            "display": "Bacteria # 3 identified in Nose by Anaerobe culture"
          },
          {
            "code": "17925-9",
            "display": "Bacteria identified in Wound deep by Anaerobe culture"
          },
          {
            "code": "17926-7",
            "display": "Bacteria # 2 identified in Wound deep by Anaerobe culture"
          },
          {
            "code": "17927-5",
            "display": "Bacteria # 3 identified in Wound deep by Anaerobe culture"
          },
          {
            "code": "17937-4",
            "display": "Bacteria # 2 identified in Burn by Culture"
          },
          {
            "code": "17938-2",
            "display": "Bacteria # 3 identified in Burn by Culture"
          },
          {
            "code": "17939-0",
            "display": "Bacteria # 4 identified in Burn by Culture"
          },
          {
            "code": "17940-8",
            "display": "Bacteria # 5 identified in Burn by Culture"
          },
          {
            "code": "17941-6",
            "display": "Bacteria # 6 identified in Burn by Culture"
          },
          {
            "code": "17964-8",
            "display": "Bacteria # 2 identified in Stool by Culture"
          },
          {
            "code": "17965-5",
            "display": "Bacteria # 3 identified in Stool by Culture"
          },
          {
            "code": "17966-3",
            "display": "Bacteria # 4 identified in Stool by Culture"
          },
          {
            "code": "17967-1",
            "display": "Bacteria # 5 identified in Stool by Culture"
          },
          {
            "code": "17968-9",
            "display": "Bacteria # 6 identified in Stool by Culture"
          },
          {
            "code": "17970-5",
            "display": "Bacteria # 2 identified in Urine by Culture"
          },
          {
            "code": "17971-3",
            "display": "Bacteria # 3 identified in Urine by Culture"
          },
          {
            "code": "17972-1",
            "display": "Bacteria # 4 identified in Urine by Culture"
          },
          {
            "code": "17973-9",
            "display": "Bacteria # 5 identified in Urine by Culture"
          },
          {
            "code": "17974-7",
            "display": "Bacteria # 6 identified in Urine by Culture"
          },
          {
            "code": "19127-0",
            "display": "Bacteria identified in Sputum by Acute Respiratoy Distress (ARDS) culture"
          },
          {
            "code": "24009-3",
            "display": "Fungus identified in Bronchial specimen by Culture"
          },
          {
            "code": "27414-2",
            "display": "Fungus identified in Stool by Culture"
          },
          {
            "code": "40435-0",
            "display": "Fungus identified in Urine by Culture"
          },
          {
            "code": "40480-6",
            "display": "Virus identified in Genital specimen by Culture"
          },
          {
            "code": "41026-6",
            "display": "Fungus identified in Genital specimen by Culture"
          },
          {
            "code": "43214-6",
            "display": "Bacteria identified in Nasopharynx by Culture"
          },
          {
            "code": "43307-8",
            "display": "Bacteria identified in Sinus by Culture"
          },
          {
            "code": "43407-6",
            "display": "Bacteria identified in Wound deep by Culture"
          },
          {
            "code": "43410-0",
            "display": "Bacteria identified in Cervix by Culture"
          },
          {
            "code": "43426-6",
            "display": "Bacteria identified in Nasopharynx by Aerobe culture"
          },
          {
            "code": "43441-5",
            "display": "Bacteria identified in Bronchoalveolar lavage by Aerobe culture"
          },
          {
            "code": "43442-3",
            "display": "Bacteria identified in Bronchial brush by Aerobe culture"
          },
          {
            "code": "44847-2",
            "display": "Bacteria # 7 identified in Urine by Culture"
          },
          {
            "code": "44849-8",
            "display": "Bacteria # 8 identified in Urine by Culture"
          },
          {
            "code": "47293-6",
            "display": "Bacteria # 7 identified in Genital specimen by Aerobe culture"
          },
          {
            "code": "47294-4",
            "display": "Bacteria # 7 identified in Wound shallow by Aerobe culture"
          },
          {
            "code": "47295-1",
            "display": "Bacteria # 8 identified in Wound shallow by Aerobe culture"
          },
          {
            "code": "52966-9",
            "display": "Bacteria identified in Anal by Culture"
          },
          {
            "code": "52967-7",
            "display": "Bacteria identified in Gastric fluid by Culture"
          },
          {
            "code": "52973-5",
            "display": "Bacteria identified in Sputum tracheal aspirate by Culture"
          },
          {
            "code": "53908-0",
            "display": "Bacteria identified in Esophageal brushing by Culture"
          },
          {
            "code": "571-0",
            "display": "Fungus identified in Hair by Culture"
          },
          {
            "code": "573-6",
            "display": "Fungus identified in Nail by Culture"
          },
          {
            "code": "575-1",
            "display": "Fungus identified in Skin by Culture"
          },
          {
            "code": "577-7",
            "display": "Fungus identified in Sputum by Culture"
          },
          {
            "code": "579-3",
            "display": "Fungus identified in Wound by Culture"
          },
          {
            "code": "5885-9",
            "display": "Virus identified in Skin by Culture"
          },
          {
            "code": "5886-7",
            "display": "Virus identified in Stool by Culture"
          },
          {
            "code": "5887-5",
            "display": "Virus identified in Throat by Culture"
          },
          {
            "code": "595-9",
            "display": "Bacteria identified in Abscess by Aerobe culture"
          },
          {
            "code": "60257-3",
            "display": "Bacteria identified in Cornea by Culture"
          },
          {
            "code": "603-1",
            "display": "Bacteria identified in Burn by Culture"
          },
          {
            "code": "604-9",
            "display": "Bacteria identified in Bronchial specimen by Aerobe culture"
          },
          {
            "code": "608-0",
            "display": "Bacteria identified in Ear by Aerobe culture"
          },
          {
            "code": "609-8",
            "display": "Bacteria identified in Eye by Aerobe culture"
          },
          {
            "code": "620-5",
            "display": "Bacteria identified in Skin by Aerobe culture"
          },
          {
            "code": "622-1",
            "display": "Bacteria identified in Sputum by Aerobe culture"
          },
          {
            "code": "623-9",
            "display": "Bacteria identified in Sputum by Cystic fibrosis respiratory culture"
          },
          {
            "code": "624-7",
            "display": "Bacteria identified in Sputum by Respiratory culture"
          },
          {
            "code": "625-4",
            "display": "Bacteria identified in Stool by Culture"
          },
          {
            "code": "626-2",
            "display": "Bacteria identified in Throat by Culture"
          },
          {
            "code": "630-4",
            "display": "Bacteria identified in Urine by Culture"
          },
          {
            "code": "632-0",
            "display": "Bacteria identified in Wound by Aerobe culture"
          },
          {
            "code": "633-8",
            "display": "Bacteria identified in Wound by Anaerobe culture"
          },
          {
            "code": "6409-7",
            "display": "Fungus identified in Sputum tracheal aspirate by Culture"
          },
          {
            "code": "6460-0",
            "display": "Bacteria identified in Sputum by Culture"
          },
          {
            "code": "6461-8",
            "display": "Bacteria identified in Stool by Anaerobe culture"
          },
          {
            "code": "6462-6",
            "display": "Bacteria identified in Wound by Culture"
          },
          {
            "code": "72373-4",
            "display": "Virus identified in Nasopharynx by Culture"
          },
          {
            "code": "73960-7",
            "display": "Bacteria identified in Mouth by Culture"
          },
          {
            "code": "74816-0",
            "display": "Bacteria identified in Eye by Anaerobe+Aerobe culture"
          },
          {
            "code": "75269-1",
            "display": "Bacteria identified in Genital specimen by Anaerobe+Aerobe culture"
          },
          {
            "code": "75357-4",
            "display": "Bacteria identified in Abscess by Anaerobe+Aerobe culture"
          },
          {
            "code": "76073-6",
            "display": "Fungus identified in Nose by Culture"
          },
          {
            "code": "76692-3",
            "display": "Fungus identified [#/volume] in Mouth by Culture"
          },
          {
            "code": "77193-1",
            "display": "Bacteria identified in Uterus by Culture"
          },
          {
            "code": "79425-5",
            "display": "Bacteria identified in Lower respiratory specimen by Cystic fibrosis respiratory culture"
          },
          {
            "code": "87709-2",
            "display": "Virus identified in Lower respiratory specimen by Culture"
          },
          {
            "code": "87930-4",
            "display": "Bacteria identified in Burn by Aerobe culture"
          },
          {
            "code": "87932-0",
            "display": "Bacteria identified in Sinus by Aerobe culture"
          },
          {
            "code": "87936-1",
            "display": "Bacteria identified in Burn by Anaerobe culture"
          },
          {
            "code": "87943-7",
            "display": "Bacteria identified in Sinus by Anaerobe culture"
          },
          {
            "code": "87980-9",
            "display": "Fungus identified in Sinus by Culture"
          },
          {
            "code": "87981-7",
            "display": "Fungus identified in Burn by Culture"
          },
          {
            "code": "88142-5",
            "display": "Bacteria identified in Cornea or Conjunctiva by Aerobe culture"
          },
          {
            "code": "88143-3",
            "display": "Fungus identified in Cornea or Conjunctiva by Culture"
          },
          {
            "code": "88683-8",
            "display": "Bacteria identified in Bronchoalveolar lavage by Anaerobe culture"
          },
          {
            "code": "88686-1",
            "display": "Fungus identified in Bronchoalveolar lavage by Culture"
          },
          {
            "code": "88687-9",
            "display": "Fungus identified in Mouth by Culture"
          },
          {
            "code": "89643-1",
            "display": "Bacteria identified in Lower respiratory specimen by Aerobe culture"
          },
          {
            "code": "89644-9",
            "display": "Bacteria identified in Lower respiratory specimen by Anaerobe culture"
          },
          {
            "code": "89656-3",
            "display": "Fungus identified in Lower respiratory specimen by Culture"
          },
          {
            "code": "90279-1",
            "display": "Bacteria identified in Semen by Aerobe culture"
          },
          {
            "code": "91812-8",
            "display": "Fungus identified in Upper respiratory specimen by Culture"
          },
          {
            "code": "91818-5",
            "display": "Bacteria identified in Upper respiratory specimen by Anaerobe culture"
          },
          {
            "code": "91819-3",
            "display": "Bacteria identified in Upper respiratory specimen by Aerobe culture"
          },
          {
            "code": "91865-6",
            "display": "Bacteria identified in Genital specimen by Anaerobe culture"
          },
          {
            "code": "91866-4",
            "display": "Bacteria identified in Mouth by Aerobe culture"
          }
        ]
      }
    ]
  },
  "expansion": {
    "identifier": "urn:uuid:da11b7e0-1120-4c50-afc2-e00eeaede0ac",
    "timestamp": "2025-05-23T18:44:59-04:00",
    "total": 154,
    "contains": [
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "10352-3",
        "display": "Bacteria identified in Genital specimen by Aerobe culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "10353-1",
        "display": "Bacteria identified in Nose by Aerobe culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "10354-9",
        "display": "Bacteria identified in Urethra by Culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "11261-5",
        "display": "Bacteria identified in Vaginal fluid by Aerobe culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "12281-2",
        "display": "Bacteria identified in Cervix by Anaerobe culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "13315-7",
        "display": "Bacteria identified in 24 hour Urine by Culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "14093-9",
        "display": "Bacteria identified in Water by Culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "14451-9",
        "display": "Virus identified in Eye by Culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "14452-7",
        "display": "Virus identified in Cervix by Culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "14453-5",
        "display": "Virus identified in Vaginal fluid by Culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "14454-3",
        "display": "Virus identified in Nose by Culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "14457-6",
        "display": "Virus identified in Urine by Culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "14458-4",
        "display": "Virus identified in Sputum by Culture"
      },
      {
        "system": "http://loinc.org",
        "version": "2.80",
        "code": "14459-2",
        "display": "Virus identified in Penis by Culture"
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      {
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        "display": "Fungus identified in Bronchoalveolar lavage by Culture"
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        "display": "Fungus identified in Mouth by Culture"
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        "system": "http://loinc.org",
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        "code": "89643-1",
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        "system": "http://loinc.org",
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        "system": "http://loinc.org",
        "version": "2.80",
        "code": "89656-3",
        "display": "Fungus identified in Lower respiratory specimen by Culture"
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        "system": "http://loinc.org",
        "version": "2.80",
        "code": "90279-1",
        "display": "Bacteria identified in Semen by Aerobe culture"
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        "system": "http://loinc.org",
        "version": "2.80",
        "code": "91812-8",
        "display": "Fungus identified in Upper respiratory specimen by Culture"
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        "system": "http://loinc.org",
        "version": "2.80",
        "code": "91818-5",
        "display": "Bacteria identified in Upper respiratory specimen by Anaerobe culture"
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        "system": "http://loinc.org",
        "version": "2.80",
        "code": "91819-3",
        "display": "Bacteria identified in Upper respiratory specimen by Aerobe culture"
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        "system": "http://loinc.org",
        "version": "2.80",
        "code": "91865-6",
        "display": "Bacteria identified in Genital specimen by Anaerobe culture"
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        "system": "http://loinc.org",
        "version": "2.80",
        "code": "91866-4",
        "display": "Bacteria identified in Mouth by Aerobe culture"
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    ]
  }
}