| Package | us.nlm.vsac |
| Resource Type | ValueSet |
| Id | 2.16.840.1.113762.1.4.1146.1409 |
| FHIR Version | R4 |
| Source | http://fhir.org/packages/us.nlm.vsac/https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.1409/expansion |
| URL | http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1409 |
| Version | 20250219 |
| Status | active |
| Date | 2025-02-19T01:09:45-05:00 |
| Name | COVID_19TestsForSARS_CoV_2GenomicSequence |
| Title | COVID_19 (Tests for SARS_CoV_2 Genomic Sequence) |
| Realm | us |
| Authority | hl7 |
| Description | This value set contains some provisional codes created for the COVID-19 response. It may be incomplete, as not all provisional COVID-19 codes are available in VSAC at the time of publication. Please contact the CSTE RCKMS Content Team for a complete list of codes to be included in this value set. |
| Purpose | (Clinical Focus: This set of values contains codes for lab test names that may be ordered or ‘observed’ for detection of SARS-CoV-2 genomic sequence or gene mutation by Molecular genetics method.),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: SARS-like Coronavirus; Coronavirus 2),(Exclusion Criteria: none) |
No resources found
| CodeSystem | |
| loinc.org | LOINC Code System |
No narrative content found in resource
FHIR{
"resourceType": "ValueSet",
"id": "2.16.840.1.113762.1.4.1146.1409",
"meta": {
"versionId": "20",
"lastUpdated": "2025-02-19T01:09:45.000-05:00",
"profile": [
"http://hl7.org/fhir/StructureDefinition/shareablevalueset",
"http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/computable-valueset-cqfm",
"http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/publishable-valueset-cqfm"
]
},
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/valueset-author",
"valueContactDetail": {
"name": "CSTE Author"
}
},
{
"url": "http://hl7.org/fhir/StructureDefinition/valueset-keyWord",
"valueString": "2019nCoV,Trigger"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate",
"valueDate": "2025-02-19"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate",
"valueDate": "2025-02-19"
}
],
"url": "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1409",
"identifier": [
{
"system": "urn:ietf:rfc:3986",
"value": "urn:oid:2.16.840.1.113762.1.4.1146.1409"
}
],
"version": "20250219",
"name": "COVID_19TestsForSARS_CoV_2GenomicSequence",
"title": "COVID_19 (Tests for SARS_CoV_2 Genomic Sequence)",
"status": "active",
"date": "2025-02-19T01:09:45-05:00",
"publisher": "CSTE Steward",
"description": "This value set contains some provisional codes created for the COVID-19 response. It may be incomplete, as not all provisional COVID-19 codes are available in VSAC at the time of publication. Please contact the CSTE RCKMS Content Team for a complete list of codes to be included in this value set.",
"jurisdiction": [
{
"coding": [
{
"system": "urn:iso:std:iso:3166",
"code": "US"
}
]
}
],
"purpose": "(Clinical Focus: This set of values contains codes for lab test names that may be ordered or ‘observed’ for detection of SARS-CoV-2 genomic sequence or gene mutation by Molecular genetics method.),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: SARS-like Coronavirus; Coronavirus 2),(Exclusion Criteria: none)",
"compose": {
"include": [
{
"system": "http://loinc.org",
"concept": [
{
"code": "100156-9",
"display": "SARS-CoV-2 (COVID-19) variant [Type] in Specimen by NAA with probe detection"
},
{
"code": "100157-7",
"display": "SARS-CoV-2 (COVID-19) lineage [Type] in Specimen by Sequencing"
},
{
"code": "103557-5",
"display": "SARS-CoV-2 (COVID-19) Mpro gene mutation detected [Identifier] in Specimen by Molecular genetics method Nominal"
},
{
"code": "94764-8",
"display": "SARS-CoV-2 (COVID-19) whole genome [Nucleotide sequence] in Isolate or Specimen by Sequencing"
},
{
"code": "96741-4",
"display": "SARS-CoV-2 (COVID-19) variant [Type] in Specimen by Sequencing"
},
{
"code": "96751-3",
"display": "SARS-CoV-2 (COVID-19) S gene mutation detected [Identifier] in Specimen by Molecular genetics method"
},
{
"code": "96752-1",
"display": "SARS-CoV-2 (COVID-19) S gene mutation [Presence] in Specimen by Molecular genetics method"
},
{
"code": "96755-4",
"display": "SARS-CoV-2 (COVID-19) variant interpretation in Specimen Narrative"
},
{
"code": "96895-8",
"display": "SARS-CoV-2 (COVID-19) lineage [Identifier] in Specimen by Molecular genetics method"
},
{
"code": "96896-6",
"display": "SARS-CoV-2 (COVID-19) clade [Type] in Specimen by Molecular genetics method"
},
{
"code": "99314-7",
"display": "SARS-CoV-2 (COVID-19) RdRp gene mutation detected [Identifier] in Specimen by Molecular genetics method"
}
]
}
]
},
"expansion": {
"identifier": "urn:uuid:fd93a2f8-1e59-48c9-8621-b7c30c721b0a",
"timestamp": "2025-05-23T18:26:59-04:00",
"total": 11,
"contains": [
{
"system": "http://loinc.org",
"version": "2.80",
"code": "100156-9",
"display": "SARS-CoV-2 (COVID-19) variant [Type] in Specimen by NAA with probe detection"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "100157-7",
"display": "SARS-CoV-2 (COVID-19) lineage [Type] in Specimen by Sequencing"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "103557-5",
"display": "SARS-CoV-2 (COVID-19) Mpro gene mutation detected [Identifier] in Specimen by Molecular genetics method Nominal"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "94764-8",
"display": "SARS-CoV-2 (COVID-19) whole genome [Nucleotide sequence] in Isolate or Specimen by Sequencing"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "96741-4",
"display": "SARS-CoV-2 (COVID-19) variant [Type] in Specimen by Sequencing"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "96751-3",
"display": "SARS-CoV-2 (COVID-19) S gene mutation detected [Identifier] in Specimen by Molecular genetics method"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "96752-1",
"display": "SARS-CoV-2 (COVID-19) S gene mutation [Presence] in Specimen by Molecular genetics method"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "96755-4",
"display": "SARS-CoV-2 (COVID-19) variant interpretation in Specimen Narrative"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "96895-8",
"display": "SARS-CoV-2 (COVID-19) lineage [Identifier] in Specimen by Molecular genetics method"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "96896-6",
"display": "SARS-CoV-2 (COVID-19) clade [Type] in Specimen by Molecular genetics method"
},
{
"system": "http://loinc.org",
"version": "2.80",
"code": "99314-7",
"display": "SARS-CoV-2 (COVID-19) RdRp gene mutation detected [Identifier] in Specimen by Molecular genetics method"
}
]
}
}