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FHIR IG analytics

Packageuk.nhsengland.genomics.r4
Resource TypeProcedure
IdCommunityCloud-GenomicStudyAnalysis-Example.json
FHIR VersionR4

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Source1

{
  "resourceType": "Procedure",
  "id": "9bc12bd5-8e06-4f10-949e-512bb623552e",
  "meta": {
    "profile": [
      "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis"
    ]
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-specimen",
      "valueReference": {
        "reference": "Specimen/b6c3ebd7-53e4-450b-b46f-0e9f83d995e6"
      }
    },
    {
      "extension": [
        {
          "url": "device",
          "valueReference": {
            "reference": "Device/44ae1fac-d147-43fb-87ba-35f6bc056f51"
          }
        },
        {
          "url": "function",
          "valueCodeableConcept": {
            "text": "Sequencing platform"
          }
        }
      ],
      "url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device"
    },
    {
      "extension": [
        {
          "url": "device",
          "valueReference": {
            "reference": "Device/1e73bfaf-b851-463f-98df-c2b6582a948e"
          }
        },
        {
          "url": "function",
          "valueCodeableConcept": {
            "text": "Bioinformatics Pipeline"
          }
        }
      ],
      "url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device"
    },
    {
      "extension": [
        {
          "url": "device",
          "valueReference": {
            "reference": "Device/04a7b32d-2270-4e4e-a1bb-80f0eaa0c4cc"
          }
        },
        {
          "url": "function",
          "valueCodeableConcept": {
            "text": "Bioinformatics Variant Caller"
          }
        }
      ],
      "url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device"
    },
    {
      "extension": [
        {
          "url": "type",
          "valueCodeableConcept": {
            "coding": [
              {
                "system": "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs",
                "code": "vcf",
                "display": "VCF"
              }
            ]
          }
        },
        {
          "url": "file",
          "valueReference": {
            "reference": "DocumentReference/1e6aef26-d201-43d1-b54c-087cd4ee5c24"
          }
        }
      ],
      "url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-output"
    }
  ],
  "status": "completed",
  "category": {
    "coding": [
      {
        "system": "http://terminology.hl7.org/CodeSystem/observation-category",
        "code": "laboratory"
      }
    ]
  },
  "subject": {
    "identifier": {
      "system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24",
      "value": "SomePatientIdentifier"
    }
  },
  "performedDateTime": "2025-11-25T17:49:00Z"
}