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Packagetw.gov.mohw.nhi.ngs
Resource TypeObservation
IdObservation-obs-lung-min.json
FHIR VersionR4

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Narrative

Note: links and images are rebased to the (stated) source

狀態:final

流水號:11450100101220250601220251212

類型:Laboratory (Observation Category Codes#laboratory)

項目:Genetic variant assessment (LOINC#69548-6)

病人Patient/pat-min

基因檢測機構Organization 2023LDTB0002

基因臨床判讀結果:Positive (ObservationInterpretationCodes #POS)

基因檢測方法:Sequencing (LOINC Answer List LL4048-6 #LA26398-0)

基因檢測檢體類型Specimen/spe-lung-min

基因報告DocumentReference/doc-lung-min

基因定序儀型號Device/dev-min

基因檢測日期:2024-07-17

基因檢測項目:FGFR2 gene targeted mutation analysis in Blood or Tissue by Molecular genetics method (LOINC#38412-3)

基因檢測列表:EGFR、FGFR2、TP53、U2AF1、BCORL1、CIC、CREBBP、EPHB4、FLT1 (HGNC Gene ID)

DNA 變異列表 (c.HGVS)

  • NM_021946.4:c.4171G>A (BCORL1) — Substitution
  • NM_015125.4:c.496C>T (CIC) — Substitution
  • NM_004380.2:c.833A>C (CREBBP) — Substitution
  • NM_004444.4:c.2578G>C (EPHB4) — Substitution

Source1

{
  "resourceType": "Observation",
  "id": "obs-lung-min",
  "meta": {
    "profile": [
      "https://nhicore.nhi.gov.tw/ngs/StructureDefinition/Observation-twngs"
    ]
  },
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "identifier": [
    {
      "value": "11450100101220250601220251212"
    }
  ],
  "status": "final",
  "category": [
    {
      "coding": [
        {
          "system": "http://terminology.hl7.org/CodeSystem/observation-category",
          "code": "laboratory"
        }
      ]
    }
  ],
  "code": {
    "coding": [
      {
        "system": "http://loinc.org",
        "code": "69548-6"
      }
    ]
  },
  "subject": {
    "reference": "Patient/pat-min"
  },
  "effectiveDateTime": "2024-07-17",
  "performer": [
    {
      "reference": "Organization/org-gene-min"
    }
  ],
  "valueCodeableConcept": {
    "coding": [
      {
        "system": "http://loinc.org",
        "code": "LA9633-4",
        "display": "Present"
      }
    ]
  },
  "interpretation": [
    {
      "coding": [
        {
          "system": "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation",
          "code": "POS",
          "display": "Positive"
        }
      ]
    }
  ],
  "method": {
    "coding": [
      {
        "system": "http://loinc.org",
        "code": "LA26398-0",
        "display": "Sequencing"
      }
    ]
  },
  "specimen": {
    "reference": "Specimen/spe-lung-min"
  },
  "device": {
    "reference": "Device/dev-min"
  },
  "derivedFrom": [
    {
      "reference": "DocumentReference/doc-lung-min"
    }
  ],
  "component": [
    {
      "code": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "81247-9",
            "display": "Master HL7 genetic variant reporting panel"
          }
        ]
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "38412-3",
            "display": "FGFR2 gene targeted mutation analysis in Blood or Tissue by Molecular genetics method"
          }
        ]
      },
      "interpretation": [
        {
          "coding": [
            {
              "system": "http://loinc.org",
              "code": "LA6692-3"
            }
          ]
        }
      ]
    },
    {
      "code": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "48018-6",
            "display": "Gene studied [ID]"
          }
        ]
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://www.genenames.org",
            "code": "HGNC:25657",
            "display": "BCORL1"
          }
        ]
      }
    },
    {
      "code": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "48018-6",
            "display": "Gene studied [ID]"
          }
        ]
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://www.genenames.org",
            "code": "HGNC:3689",
            "display": "FGFR2"
          }
        ]
      }
    },
    {
      "code": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "48018-6",
            "display": "Gene studied [ID]"
          }
        ]
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://www.genenames.org",
            "code": "HGNC:12453",
            "display": "U2AF1"
          }
        ]
      }
    },
    {
      "code": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "48018-6",
            "display": "Gene studied [ID]"
          }
        ]
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://www.genenames.org",
            "code": "HGNC:3236",
            "display": "EGFR"
          }
        ]
      }
    },
    {
      "code": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "48018-6",
            "display": "Gene studied [ID]"
          }
        ]
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://www.genenames.org",
            "code": "HGNC:11998",
            "display": "TP53"
          }
        ]
      }
    },
    {
      "code": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "48018-6",
            "display": "Gene studied [ID]"
          }
        ]
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://www.genenames.org",
            "code": "HGNC:3395",
            "display": "EPHB4"
          }
        ]
      }
    },
    {
      "code": {
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            "display": "Gene studied [ID]"
          }
        ]
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://www.genenames.org",
            "code": "HGNC:3763",
            "display": "FLT1"
          }
        ]
      }
    },
    {
      "code": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "48018-6",
            "display": "Gene studied [ID]"
          }
        ]
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://www.genenames.org",
            "code": "HGNC:2348",
            "display": "CREBBP"
          }
        ]
      }
    },
    {
      "code": {
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          {
            "system": "http://loinc.org",
            "code": "48018-6",
            "display": "Gene studied [ID]"
          }
        ]
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://www.genenames.org",
            "code": "HGNC:14214",
            "display": "CIC"
          }
        ]
      }
    },
    {
      "code": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "48004-6",
            "display": "DNA change (c.HGVS)"
          }
        ]
      },
      "valueCodeableConcept": {
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          {
            "system": "http://varnomen.hgvs.org",
            "code": "NM_021946.4:c.4171G>A"
          }
        ]
      },
      "interpretation": [
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              "system": "http://loinc.org",
              "code": "LA6690-7"
            }
          ]
        }
      ]
    },
    {
      "code": {
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            "system": "http://loinc.org",
            "code": "48004-6",
            "display": "DNA change (c.HGVS)"
          }
        ]
      },
      "valueCodeableConcept": {
        "coding": [
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          }
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      },
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        {
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            }
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    },
    {
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          }
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      },
      "valueCodeableConcept": {
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            "code": "NM_004380.2:c.833A>C"
          }
        ]
      },
      "interpretation": [
        {
          "coding": [
            {
              "system": "http://loinc.org",
              "code": "LA6690-7"
            }
          ]
        }
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    },
    {
      "code": {
        "coding": [
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            "system": "http://loinc.org",
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            "display": "DNA change (c.HGVS)"
          }
        ]
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://varnomen.hgvs.org",
            "code": "NM_004444.4:c.2578G>C"
          }
        ]
      },
      "interpretation": [
        {
          "coding": [
            {
              "system": "http://loinc.org",
              "code": "LA6690-7"
            }
          ]
        }
      ]
    }
  ]
}