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Packagesynapxe.sgcdi
Resource TypeStructureDefinition
Idprofile-molecularbiomarker.StructureDefinition.json
FHIR VersionR5
Sourcehttps://simplifier.net/resolve?scope=synapxe.sgcdi@1.2.0&canonical=https://fhir.synapxe.sg/StructureDefinition/profile-molecularbiomarker
URLhttps://fhir.synapxe.sg/StructureDefinition/profile-molecularbiomarker
Version1.2.0
Statusactive
NameMolecularBiomarker
DescriptionGenomics molecular biomarker profile constrained from Observation.
TypeObservation
Kindresource

Resources that use this resource

StructureDefinition
synapxe.sgcdi#1.2.0profile-bundle-genomicsreportBundleGenomicsReport
synapxe.sgcdi#1.2.0profile-genomicsreportGenomicsReport

Resources that this resource uses

StructureDefinition
synapxe.sgcdi#1.2.0profile-codeableconceptCodeableConcept

Narrative

No narrative content found in resource


Source1

{
  "resourceType": "StructureDefinition",
  "url": "https://fhir.synapxe.sg/StructureDefinition/profile-molecularbiomarker",
  "version": "1.2.0",
  "name": "MolecularBiomarker",
  "status": "active",
  "description": "Genomics molecular biomarker profile constrained from Observation.",
  "fhirVersion": "5.0.0",
  "kind": "resource",
  "abstract": false,
  "type": "Observation",
  "baseDefinition": "http://hl7.org/fhir/StructureDefinition/Observation",
  "derivation": "constraint",
  "differential": {
    "element": [
      {
        "id": "Observation.id",
        "path": "Observation.id",
        "max": "0"
      },
      {
        "id": "Observation.identifier",
        "path": "Observation.identifier",
        "max": "0"
      },
      {
        "id": "Observation.instantiates[x]",
        "path": "Observation.instantiates[x]",
        "max": "0"
      },
      {
        "id": "Observation.basedOn",
        "path": "Observation.basedOn",
        "max": "0"
      },
      {
        "id": "Observation.triggeredBy",
        "path": "Observation.triggeredBy",
        "max": "0"
      },
      {
        "id": "Observation.partOf",
        "path": "Observation.partOf",
        "max": "0"
      },
      {
        "id": "Observation.category",
        "path": "Observation.category",
        "slicing": {
          "discriminator": [
            {
              "type": "value",
              "path": "coding.code"
            }
          ],
          "rules": "closed"
        },
        "min": 2,
        "max": "2"
      },
      {
        "id": "Observation.category:labCategory",
        "path": "Observation.category",
        "sliceName": "labCategory",
        "min": 1,
        "max": "1",
        "type": [
          {
            "code": "CodeableConcept",
            "profile": [
              "https://fhir.synapxe.sg/StructureDefinition/profile-codeableconcept"
            ]
          }
        ]
      },
      {
        "id": "Observation.category:labCategory.coding",
        "path": "Observation.category.coding",
        "max": "1"
      },
      {
        "id": "Observation.category:labCategory.coding.system",
        "path": "Observation.category.coding.system",
        "fixedUri": "http://terminology.hl7.org/CodeSystem/observation-category"
      },
      {
        "id": "Observation.category:labCategory.coding.code",
        "path": "Observation.category.coding.code",
        "fixedCode": "laboratory"
      },
      {
        "id": "Observation.category:mbCategory",
        "path": "Observation.category",
        "sliceName": "mbCategory",
        "min": 1,
        "max": "1",
        "type": [
          {
            "code": "CodeableConcept",
            "profile": [
              "https://fhir.synapxe.sg/StructureDefinition/profile-codeableconcept"
            ]
          }
        ]
      },
      {
        "id": "Observation.category:mbCategory.coding",
        "path": "Observation.category.coding",
        "max": "1"
      },
      {
        "id": "Observation.category:mbCategory.coding.system",
        "path": "Observation.category.coding.system",
        "fixedUri": "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs"
      },
      {
        "id": "Observation.category:mbCategory.coding.code",
        "path": "Observation.category.coding.code",
        "fixedCode": "biomarker-category"
      },
      {
        "id": "Observation.code",
        "path": "Observation.code",
        "type": [
          {
            "code": "CodeableConcept",
            "profile": [
              "https://fhir.synapxe.sg/StructureDefinition/profile-codeableconcept"
            ]
          }
        ]
      },
      {
        "id": "Observation.subject",
        "path": "Observation.subject",
        "max": "0"
      },
      {
        "id": "Observation.focus",
        "path": "Observation.focus",
        "max": "0"
      },
      {
        "id": "Observation.encounter",
        "path": "Observation.encounter",
        "max": "0"
      },
      {
        "id": "Observation.effective[x]",
        "path": "Observation.effective[x]",
        "max": "0"
      },
      {
        "id": "Observation.issued",
        "path": "Observation.issued",
        "max": "0"
      },
      {
        "id": "Observation.performer",
        "path": "Observation.performer",
        "max": "0"
      },
      {
        "id": "Observation.value[x]",
        "path": "Observation.value[x]",
        "max": "0"
      },
      {
        "id": "Observation.dataAbsentReason",
        "path": "Observation.dataAbsentReason",
        "max": "0"
      },
      {
        "id": "Observation.interpretation",
        "path": "Observation.interpretation",
        "max": "0"
      },
      {
        "id": "Observation.note",
        "path": "Observation.note",
        "max": "0"
      },
      {
        "id": "Observation.bodySite",
        "path": "Observation.bodySite",
        "max": "0"
      },
      {
        "id": "Observation.bodyStructure",
        "path": "Observation.bodyStructure",
        "max": "0"
      },
      {
        "id": "Observation.method",
        "path": "Observation.method",
        "max": "0"
      },
      {
        "id": "Observation.specimen",
        "path": "Observation.specimen",
        "max": "0"
      },
      {
        "id": "Observation.device",
        "path": "Observation.device",
        "max": "0"
      },
      {
        "id": "Observation.referenceRange",
        "path": "Observation.referenceRange",
        "max": "0"
      },
      {
        "id": "Observation.hasMember",
        "path": "Observation.hasMember",
        "max": "0"
      },
      {
        "id": "Observation.derivedFrom",
        "path": "Observation.derivedFrom",
        "max": "0"
      },
      {
        "id": "Observation.component",
        "path": "Observation.component",
        "slicing": {
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            {
              "type": "value",
              "path": "code"
            }
          ],
          "rules": "closed"
        },
        "min": 1
      },
      {
        "id": "Observation.component.id",
        "path": "Observation.component.id",
        "max": "0"
      },
      {
        "id": "Observation.component.extension",
        "path": "Observation.component.extension",
        "max": "0"
      },
      {
        "id": "Observation.component.modifierExtension",
        "path": "Observation.component.modifierExtension",
        "max": "0"
      },
      {
        "id": "Observation.component:genomic-source-class",
        "path": "Observation.component",
        "sliceName": "genomic-source-class"
      },
      {
        "id": "Observation.component:genomic-source-class.code",
        "path": "Observation.component.code",
        "type": [
          {
            "code": "CodeableConcept",
            "profile": [
              "https://fhir.synapxe.sg/StructureDefinition/profile-codeableconcept"
            ]
          }
        ]
      },
      {
        "id": "Observation.component:genomic-source-class.code.coding",
        "path": "Observation.component.code.coding",
        "max": "1"
      },
      {
        "id": "Observation.component:genomic-source-class.code.coding.system",
        "path": "Observation.component.code.coding.system",
        "fixedUri": "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs"
      },
      {
        "id": "Observation.component:genomic-source-class.code.coding.code",
        "path": "Observation.component.code.coding.code",
        "fixedCode": "genomic-source-class"
      },
      {
        "id": "Observation.component:genomic-source-class.value[x]",
        "path": "Observation.component.value[x]",
        "min": 1,
        "type": [
          {
            "code": "CodeableConcept",
            "profile": [
              "https://fhir.synapxe.sg/StructureDefinition/profile-codeableconcept"
            ]
          }
        ]
      },
      {
        "id": "Observation.component:genomic-source-class.dataAbsentReason",
        "path": "Observation.component.dataAbsentReason",
        "max": "0"
      },
      {
        "id": "Observation.component:genomic-source-class.interpretation",
        "path": "Observation.component.interpretation",
        "max": "0"
      },
      {
        "id": "Observation.component:genomic-source-class.referenceRange",
        "path": "Observation.component.referenceRange",
        "max": "0"
      },
      {
        "id": "Observation.component:specimen-condition",
        "path": "Observation.component",
        "sliceName": "specimen-condition"
      },
      {
        "id": "Observation.component:specimen-condition.code",
        "path": "Observation.component.code",
        "type": [
          {
            "code": "CodeableConcept",
            "profile": [
              "https://fhir.synapxe.sg/StructureDefinition/profile-codeableconcept"
            ]
          }
        ]
      },
      {
        "id": "Observation.component:specimen-condition.code.coding",
        "path": "Observation.component.code.coding",
        "max": "1"
      },
      {
        "id": "Observation.component:specimen-condition.code.coding.system",
        "path": "Observation.component.code.coding.system",
        "fixedUri": "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs"
      },
      {
        "id": "Observation.component:specimen-condition.code.coding.code",
        "path": "Observation.component.code.coding.code",
        "fixedCode": "specimen-condition"
      },
      {
        "id": "Observation.component:specimen-condition.value[x]",
        "path": "Observation.component.value[x]",
        "min": 1,
        "type": [
          {
            "code": "string"
          }
        ]
      },
      {
        "id": "Observation.component:specimen-condition.dataAbsentReason",
        "path": "Observation.component.dataAbsentReason",
        "max": "0"
      },
      {
        "id": "Observation.component:specimen-condition.interpretation",
        "path": "Observation.component.interpretation",
        "max": "0"
      },
      {
        "id": "Observation.component:specimen-condition.referenceRange",
        "path": "Observation.component.referenceRange",
        "max": "0"
      }
    ]
  }
}