FHIR IG analytics| Package | rki.demis.igs |
| Resource Type | Bundle |
| Id | example-bundle-notificationbundlesequence-05.json |
| FHIR Version | R4 |
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No resources found
No narrative content found in resource
FHIR
FHIRsmith{
"resourceType": "Bundle",
"meta": {
"lastUpdated": "2022-03-12T10:16:01+01:00",
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/NotificationBundleSequence"
]
},
"identifier": {
"system": "https://demis.rki.de/fhir/NamingSystem/NotificationBundleId",
"value": "16f02b4a-99bb-3193-8f5c-7b4b476cf1db"
},
"type": "document",
"timestamp": "2022-03-12T10:16:01+01:00",
"entry": [
{
"fullUrl": "https://demis.rki.de/fhir/igs/Composition/5370a8fd-7950-30e9-b37b-43795b7f10db",
"resource": {
"resourceType": "Composition",
"id": "5370a8fd-7950-30e9-b37b-43795b7f10db",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/NotificationSequence"
]
},
"identifier": {
"system": "https://demis.rki.de/fhir/NamingSystem/NotificationId",
"value": "a232c0e5-bcbe-4800-92cc-0ec5cd8548b5"
},
"status": "final",
"type": {
"coding": [
{
"system": "http://loinc.org",
"code": "34782-3",
"display": "Infectious disease Note"
}
]
},
"category": [
{
"coding": [
{
"system": "http://loinc.org",
"code": "11502-2",
"display": "Laboratory report"
}
]
}
],
"subject": {
"reference": "Patient/3170b340-6419-3411-b083-3d4f6b47e632"
},
"date": "2022-03-12T10:16:00.000+01:00",
"author": [
{
"reference": "PractitionerRole/d55f438f-2c8f-35bf-b69e-c88bf700127c"
}
],
"title": "Sequenzmeldung",
"relatesTo": [
{
"code": "appends",
"targetReference": {
"type": "Composition",
"identifier": {
"system": "https://demis.rki.de/fhir/NamingSystem/NotificationId",
"value": "faacff32-2257-4411-858f-238e7ac89ee6"
}
}
}
],
"section": [
{
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "11502-2",
"display": "Laboratory report"
}
]
},
"entry": [
{
"reference": "DiagnosticReport/5556ed26-9139-3f46-ba00-e556e6e3ec12"
}
]
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Patient/3170b340-6419-3411-b083-3d4f6b47e632",
"resource": {
"resourceType": "Patient",
"id": "3170b340-6419-3411-b083-3d4f6b47e632",
"meta": {
"profile": [
"https://demis.rki.de/fhir/StructureDefinition/NotifiedPersonAnonymous"
]
},
"gender": "male",
"birthDate": "1972-11",
"address": [
{
"extension": [
{
"url": "https://demis.rki.de/fhir/StructureDefinition/AddressUse",
"valueCoding": {
"system": "https://demis.rki.de/fhir/CodeSystem/addressUse",
"code": "primary"
}
}
],
"postalCode": "130"
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/PractitionerRole/d55f438f-2c8f-35bf-b69e-c88bf700127c",
"resource": {
"resourceType": "PractitionerRole",
"id": "d55f438f-2c8f-35bf-b69e-c88bf700127c",
"meta": {
"profile": [
"https://demis.rki.de/fhir/StructureDefinition/NotifierRole"
]
},
"organization": {
"reference": "Organization/ff81c15a-e838-34e2-b3b1-1ed82fa77869"
}
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Organization/ff81c15a-e838-34e2-b3b1-1ed82fa77869",
"resource": {
"resourceType": "Organization",
"id": "ff81c15a-e838-34e2-b3b1-1ed82fa77869",
"meta": {
"profile": [
"https://demis.rki.de/fhir/StructureDefinition/NotifierFacility"
]
},
"identifier": [
{
"system": "https://demis.rki.de/fhir/NamingSystem/DemisLaboratoryId",
"value": "10285"
}
],
"type": [
{
"coding": [
{
"system": "https://demis.rki.de/fhir/CodeSystem/organizationType",
"code": "refLab",
"display": "Einrichtung der Spezialdiagnostik"
}
]
}
],
"name": "Nationales Referenzzentrum für Influenza, FG17, RKI",
"telecom": [
{
"system": "email",
"value": "NRZ-Influenza@rki.de",
"use": "work"
}
],
"address": [
{
"line": [
"Seestr. 10"
],
"city": "Berlin",
"postalCode": "13353",
"country": "DE"
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/PractitionerRole/d05f8243-ca72-33c0-bb98-ecd78573b6fd",
"resource": {
"resourceType": "PractitionerRole",
"id": "d05f8243-ca72-33c0-bb98-ecd78573b6fd",
"meta": {
"profile": [
"https://demis.rki.de/fhir/StructureDefinition/SubmittingRole"
]
},
"organization": {
"reference": "Organization/e3521081-8449-3a30-9aad-b39f258f1a50"
}
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Organization/e3521081-8449-3a30-9aad-b39f258f1a50",
"resource": {
"resourceType": "Organization",
"id": "e3521081-8449-3a30-9aad-b39f258f1a50",
"meta": {
"profile": [
"https://demis.rki.de/fhir/StructureDefinition/SubmittingFacility"
]
},
"identifier": [
{
"system": "https://fhir.kbv.de/NamingSystem/KBV_NS_Base_BSNR",
"value": "987654321"
}
],
"name": "Primärlabor",
"telecom": [
{
"system": "phone",
"value": "03098765410",
"use": "work"
},
{
"system": "fax",
"value": "03098765411",
"use": "work"
},
{
"system": "email",
"value": "ifsg@primaerlabor-gibt-es-nicht.de",
"use": "work"
},
{
"system": "url",
"value": "http://primaerlabor-gibt-es-nicht.de",
"use": "work"
}
],
"address": [
{
"line": [
"Dingsweg 321"
],
"city": "Berlin",
"postalCode": "13055",
"country": "DE"
}
],
"contact": [
{
"name": {
"use": "official",
"family": "Kontakt",
"given": [
"Caroline"
]
}
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/DiagnosticReport/5556ed26-9139-3f46-ba00-e556e6e3ec12",
"resource": {
"resourceType": "DiagnosticReport",
"id": "5556ed26-9139-3f46-ba00-e556e6e3ec12",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/LaboratoryReportSequence"
]
},
"status": "final",
"code": {
"coding": [
{
"system": "https://demis.rki.de/fhir/CodeSystem/notificationCategory",
"code": "cvdp",
"display": "Severe-Acute-Respiratory-Syndrome-Coronavirus-2 (SARS-CoV-2)"
}
]
},
"subject": {
"reference": "Patient/3170b340-6419-3411-b083-3d4f6b47e632"
},
"issued": "2022-03-12T10:15:00+01:00",
"result": [
{
"reference": "Observation/87b77ef3-5f92-35bf-8842-fabddf1481d8"
}
],
"conclusion": "NACHWEIS eines meldepflichtigen Erregers",
"conclusionCode": [
{
"coding": [
{
"system": "https://demis.rki.de/fhir/CodeSystem/conclusionCode",
"code": "pathogenDetected",
"display": "Meldepflichtiger Erreger nachgewiesen"
}
]
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Observation/87b77ef3-5f92-35bf-8842-fabddf1481d8",
"resource": {
"resourceType": "Observation",
"id": "87b77ef3-5f92-35bf-8842-fabddf1481d8",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/PathogenDetectionSequence"
]
},
"status": "final",
"category": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/observation-category",
"code": "laboratory"
}
]
}
],
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "96741-4",
"display": "SARS-CoV-2 (COVID-19) variant Sequencing Nom (Specimen)"
}
]
},
"subject": {
"reference": "Patient/3170b340-6419-3411-b083-3d4f6b47e632"
},
"valueString": "BA.2",
"interpretation": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation",
"code": "POS"
}
]
}
],
"method": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "117040002",
"display": "Nucleic acid sequencing (procedure)"
}
]
},
"specimen": {
"reference": "Specimen/035aa838-c776-3ab8-a6fd-cb267fd84288"
},
"device": {
"reference": "Device/1b7a649a-bff9-32f2-92d5-e489fab20501"
},
"derivedFrom": [
{
"reference": "MolecularSequence/3807d98a-8d16-3b5d-8746-ea89e1bbdb78"
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Specimen/035aa838-c776-3ab8-a6fd-cb267fd84288",
"resource": {
"resourceType": "Specimen",
"id": "035aa838-c776-3ab8-a6fd-cb267fd84288",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/SpecimenSequence"
]
},
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "258604001",
"display": "Upper respiratory specimen (specimen)"
}
]
},
"subject": {
"reference": "Patient/3170b340-6419-3411-b083-3d4f6b47e632"
},
"receivedTime": "2022-03-11T09:40:00.000+01:00",
"collection": {
"collector": {
"reference": "PractitionerRole/d05f8243-ca72-33c0-bb98-ecd78573b6fd"
},
"collectedDateTime": "2022-02-01T09:50:00.000+01:00"
},
"processing": [
{
"description": "nCoV-2019 sequencing protocol",
"procedure": {
"coding": [
{
"system": "https://demis.rki.de/fhir/igs/CodeSystem/sequencingStrategy",
"code": "amplicon"
}
]
},
"additive": [
{
"reference": "Substance/fe4de8bc-d1a8-3d74-9d60-95e8ead531bf"
},
{
"reference": "Substance/4546cea4-d912-3053-8834-6ce723d7b2d8"
},
{
"reference": "Substance/86cd3930-7a3b-3a8f-818f-4e1d184c3e44"
}
],
"timeDateTime": "2022-03-11T10:40:00.000+01:00"
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Substance/fe4de8bc-d1a8-3d74-9d60-95e8ead531bf",
"resource": {
"resourceType": "Substance",
"id": "fe4de8bc-d1a8-3d74-9d60-95e8ead531bf",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/AdapterSubstance"
]
},
"code": {
"coding": [
{
"system": "https://demis.rki.de/fhir/igs/CodeSystem/sequencingSubstances",
"code": "adapter",
"display": "Adapter Sequence"
}
]
},
"description": "AGATCGGAAGAG"
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Substance/4546cea4-d912-3053-8834-6ce723d7b2d8",
"resource": {
"resourceType": "Substance",
"id": "4546cea4-d912-3053-8834-6ce723d7b2d8",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/AdapterSubstance"
]
},
"code": {
"coding": [
{
"system": "https://demis.rki.de/fhir/igs/CodeSystem/sequencingSubstances",
"code": "adapter",
"display": "Adapter Sequence"
}
]
},
"description": "CTCTTCCGATCT"
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Substance/86cd3930-7a3b-3a8f-818f-4e1d184c3e44",
"resource": {
"resourceType": "Substance",
"id": "86cd3930-7a3b-3a8f-818f-4e1d184c3e44",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/PrimerSubstance"
]
},
"code": {
"coding": [
{
"system": "https://demis.rki.de/fhir/igs/CodeSystem/sequencingSubstances",
"code": "primer",
"display": "Primer Sequence"
}
]
},
"description": "ARTICv4.1 - https://github.com/artic-network/primer-schemes/blob/master/nCoV-2019/V4.1/SARS-CoV-2.primer.bed"
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Device/1b7a649a-bff9-32f2-92d5-e489fab20501",
"resource": {
"resourceType": "Device",
"id": "1b7a649a-bff9-32f2-92d5-e489fab20501",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/SequencingDevice"
]
},
"deviceName": [
{
"name": "Illumina_MiSeq",
"type": "model-name"
}
],
"type": {
"coding": [
{
"system": "https://demis.rki.de/fhir/igs/CodeSystem/sequencingPlatform",
"code": "illumina",
"display": "Illumina is 4-channel flowgram with 1-to-1 mapping between basecalls and flows"
}
]
}
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/MolecularSequence/3807d98a-8d16-3b5d-8746-ea89e1bbdb78",
"resource": {
"resourceType": "MolecularSequence",
"id": "3807d98a-8d16-3b5d-8746-ea89e1bbdb78",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/Sequence"
]
},
"extension": [
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceAuthor",
"valueString": "Ralf Dürrwald, Stephan Fuchs, Stefan Kroeger, Marianne Wedde, Oliver Drechsel, Aleksandar Radonic, Rene Kmiecinski, Thorsten Wolff"
},
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/SequencingReason",
"valueCoding": {
"system": "http://snomed.info/sct",
"code": "255226008",
"display": "Random (qualifier value)"
}
},
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceDocumentReference",
"valueReference": {
"reference": "https://demis.rki.de/fhir/igs/DocumentReference/49e4d42c-41e1-48c0-81c6-639a16f9b629",
"type": "DocumentReference"
}
},
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceDocumentReference",
"valueReference": {
"reference": "https://demis.rki.de/fhir/igs/DocumentReference/99dbb64b-fd5c-4684-830c-94a8b497b965",
"type": "DocumentReference"
}
}
],
"identifier": [
{
"value": "22-03595"
}
],
"type": "dna",
"coordinateSystem": 0,
"specimen": {
"reference": "Specimen/035aa838-c776-3ab8-a6fd-cb267fd84288"
},
"device": {
"reference": "Device/1b7a649a-bff9-32f2-92d5-e489fab20501"
},
"performer": {
"reference": "Organization/ff81c15a-e838-34e2-b3b1-1ed82fa77869"
},
"repository": [
{
"extension": [
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceUploadStatus",
"valueCoding": {
"system": "http://snomed.info/sct",
"code": "397943006"
}
}
],
"type": "other",
"name": "gisaid"
}
]
}
}
]
}