FHIR IG analytics| Package | rki.demis.igs |
| Resource Type | Bundle |
| Id | example-bundle-notificationbundlesequence-04.json |
| FHIR Version | R4 |
No resources found
No resources found
No narrative content found in resource
FHIR
FHIRsmith{
"resourceType": "Bundle",
"meta": {
"lastUpdated": "2022-10-23T10:16:01+01:00",
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/NotificationBundleSequence"
]
},
"identifier": {
"system": "https://demis.rki.de/fhir/NamingSystem/NotificationBundleId",
"value": "1340e888-09fc-307e-8cf7-89a82a2da82f"
},
"type": "document",
"timestamp": "2022-10-23T10:16:01+01:00",
"entry": [
{
"fullUrl": "https://demis.rki.de/fhir/igs/Composition/75d18444-d984-339c-b748-45bed5036792",
"resource": {
"resourceType": "Composition",
"id": "75d18444-d984-339c-b748-45bed5036792",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/NotificationSequence"
]
},
"identifier": {
"system": "https://demis.rki.de/fhir/NamingSystem/NotificationId",
"value": "2e7e9312-5252-4b5d-bdd0-16c0119f6d54"
},
"status": "final",
"type": {
"coding": [
{
"system": "http://loinc.org",
"code": "34782-3",
"display": "Infectious disease Note"
}
]
},
"category": [
{
"coding": [
{
"system": "http://loinc.org",
"code": "11502-2",
"display": "Laboratory report"
}
]
}
],
"subject": {
"reference": "Patient/bc6fd419-e020-3294-90a5-4975bb0a2d92"
},
"date": "2022-10-23T10:16:00.000+01:00",
"author": [
{
"reference": "PractitionerRole/2cbbb5e7-8c23-353b-92bf-6e155d129a72"
}
],
"title": "Sequenzmeldung",
"relatesTo": [
{
"code": "appends",
"targetReference": {
"type": "Composition",
"identifier": {
"system": "https://demis.rki.de/fhir/NamingSystem/NotificationId",
"value": "a26de91b-1911-4e32-a9f4-6778e65dc122"
}
}
}
],
"section": [
{
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "11502-2",
"display": "Laboratory report"
}
]
},
"entry": [
{
"reference": "DiagnosticReport/afecda26-7a3d-3f9d-8870-5d7657472cd6"
}
]
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Patient/bc6fd419-e020-3294-90a5-4975bb0a2d92",
"resource": {
"resourceType": "Patient",
"id": "bc6fd419-e020-3294-90a5-4975bb0a2d92",
"meta": {
"profile": [
"https://demis.rki.de/fhir/StructureDefinition/NotifiedPersonAnonymous"
]
},
"gender": "female",
"birthDate": "2011-01",
"address": [
{
"extension": [
{
"url": "https://demis.rki.de/fhir/StructureDefinition/AddressUse",
"valueCoding": {
"system": "https://demis.rki.de/fhir/CodeSystem/addressUse",
"code": "primary"
}
}
],
"postalCode": "123"
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/PractitionerRole/2cbbb5e7-8c23-353b-92bf-6e155d129a72",
"resource": {
"resourceType": "PractitionerRole",
"id": "2cbbb5e7-8c23-353b-92bf-6e155d129a72",
"meta": {
"profile": [
"https://demis.rki.de/fhir/StructureDefinition/NotifierRole"
]
},
"organization": {
"reference": "Organization/08c4e143-1125-3f11-a1d5-1586fc5e2e31"
}
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Organization/08c4e143-1125-3f11-a1d5-1586fc5e2e31",
"resource": {
"resourceType": "Organization",
"id": "08c4e143-1125-3f11-a1d5-1586fc5e2e31",
"meta": {
"profile": [
"https://demis.rki.de/fhir/StructureDefinition/NotifierFacility"
]
},
"identifier": [
{
"system": "https://demis.rki.de/fhir/NamingSystem/DemisLaboratoryId",
"value": "10565"
}
],
"type": [
{
"coding": [
{
"system": "https://demis.rki.de/fhir/CodeSystem/organizationType",
"code": "refLab",
"display": "Einrichtung der Spezialdiagnostik"
}
]
}
],
"name": "Forschungszentrum Borstel",
"telecom": [
{
"system": "phone",
"value": "+49 (0) 4537 188-0",
"use": "work"
}
],
"address": [
{
"line": [
"Parkallee 1"
],
"city": "Borstel",
"postalCode": "23845",
"country": "DE"
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/PractitionerRole/c9749945-7b6e-39a6-a117-422d4661bb3a",
"resource": {
"resourceType": "PractitionerRole",
"id": "c9749945-7b6e-39a6-a117-422d4661bb3a",
"meta": {
"profile": [
"https://demis.rki.de/fhir/StructureDefinition/SubmittingRole"
]
},
"organization": {
"reference": "Organization/0541e1b6-228d-352c-a025-0a17e1463d76"
}
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Organization/0541e1b6-228d-352c-a025-0a17e1463d76",
"resource": {
"resourceType": "Organization",
"id": "0541e1b6-228d-352c-a025-0a17e1463d76",
"meta": {
"profile": [
"https://demis.rki.de/fhir/StructureDefinition/SubmittingFacility"
]
},
"identifier": [
{
"system": "https://demis.rki.de/fhir/NamingSystem/DemisLaboratoryId",
"value": "10116"
}
],
"name": "Labor Dr. Limbach & Kollegen GbR",
"telecom": [
{
"system": "email",
"value": "info@labor-limbach.de",
"use": "work"
}
],
"address": [
{
"line": [
"Im Breitspiel 16"
],
"city": "Heidelberg",
"postalCode": "69126",
"country": "DE"
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/DiagnosticReport/afecda26-7a3d-3f9d-8870-5d7657472cd6",
"resource": {
"resourceType": "DiagnosticReport",
"id": "afecda26-7a3d-3f9d-8870-5d7657472cd6",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/LaboratoryReportSequence"
]
},
"status": "final",
"code": {
"coding": [
{
"system": "https://demis.rki.de/fhir/CodeSystem/notificationCategory",
"code": "mytp",
"display": "Mycobacterium tuberculosis, Mycobacterium africanum, Mycobacterium bovis; Meldepflicht für den direkten Erregernachweis sowie nachfolgend für das Ergebnis der Resistenzbestimmung; vorab auch für den Nachweis säurefester Stäbchen im Sputum"
}
]
},
"subject": {
"reference": "Patient/bc6fd419-e020-3294-90a5-4975bb0a2d92"
},
"issued": "2022-10-23T10:15:00+01:00",
"result": [
{
"reference": "Observation/5ee10ec4-a754-314c-9886-5b17d6d48457"
}
],
"conclusion": "NACHWEIS eines meldepflichtigen Erregers",
"conclusionCode": [
{
"coding": [
{
"system": "https://demis.rki.de/fhir/CodeSystem/conclusionCode",
"code": "pathogenDetected",
"display": "Meldepflichtiger Erreger nachgewiesen"
}
]
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Observation/5ee10ec4-a754-314c-9886-5b17d6d48457",
"resource": {
"resourceType": "Observation",
"id": "5ee10ec4-a754-314c-9886-5b17d6d48457",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/PathogenDetectionSequence"
]
},
"status": "final",
"category": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/observation-category",
"code": "laboratory"
}
]
}
],
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "92827-5",
"display": "Mycobacterium tuberculosis complex species identified in Specimen by Sequencing"
}
]
},
"subject": {
"reference": "Patient/bc6fd419-e020-3294-90a5-4975bb0a2d92"
},
"valueCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "113861009",
"display": "Mycobacterium tuberculosis (organism)"
}
]
},
"interpretation": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation",
"code": "POS"
}
]
}
],
"method": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "117040002",
"display": "Nucleic acid sequencing (procedure)"
}
]
},
"specimen": {
"reference": "Specimen/6007857d-46b3-3eaf-84bf-c245aed6c346"
},
"device": {
"reference": "Device/213c2363-6959-3ef1-a76b-91f46b37f90d"
},
"derivedFrom": [
{
"reference": "MolecularSequence/485c4dc4-c5a6-31b0-a4fa-6420bcec319a"
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Specimen/6007857d-46b3-3eaf-84bf-c245aed6c346",
"resource": {
"resourceType": "Specimen",
"id": "6007857d-46b3-3eaf-84bf-c245aed6c346",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/SpecimenSequence"
]
},
"extension": [
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/Isolate",
"valueString": "20004726"
}
],
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "119334006",
"display": "Sputum specimen (specimen)"
}
]
},
"subject": {
"reference": "Patient/bc6fd419-e020-3294-90a5-4975bb0a2d92"
},
"receivedTime": "2020-07-09T15:40:00.000+01:00",
"collection": {
"collector": {
"reference": "PractitionerRole/c9749945-7b6e-39a6-a117-422d4661bb3a"
},
"collectedDateTime": "2020-07-09T09:50:00.000+01:00"
},
"processing": [
{
"description": "Nextera XT",
"procedure": {
"coding": [
{
"system": "https://demis.rki.de/fhir/igs/CodeSystem/sequencingStrategy",
"code": "wgs"
}
]
},
"additive": [
{
"reference": "Substance/8bdf9eb0-ba69-3d54-a228-ecf5f21036e2"
},
{
"reference": "Substance/3c2a47c9-2901-324d-9b4a-98598e34fe35"
}
],
"timeDateTime": "2020-07-21T10:40:00.000+01:00"
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Substance/8bdf9eb0-ba69-3d54-a228-ecf5f21036e2",
"resource": {
"resourceType": "Substance",
"id": "8bdf9eb0-ba69-3d54-a228-ecf5f21036e2",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/AdapterSubstance"
]
},
"code": {
"coding": [
{
"system": "https://demis.rki.de/fhir/igs/CodeSystem/sequencingSubstances",
"code": "adapter",
"display": "Adapter Sequence"
}
]
},
"description": "TAGCGAGT"
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Substance/3c2a47c9-2901-324d-9b4a-98598e34fe35",
"resource": {
"resourceType": "Substance",
"id": "3c2a47c9-2901-324d-9b4a-98598e34fe35",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/AdapterSubstance"
]
},
"code": {
"coding": [
{
"system": "https://demis.rki.de/fhir/igs/CodeSystem/sequencingSubstances",
"code": "adapter",
"display": "Adapter Sequence"
}
]
},
"description": "TCTCTCCG"
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Device/213c2363-6959-3ef1-a76b-91f46b37f90d",
"resource": {
"resourceType": "Device",
"id": "213c2363-6959-3ef1-a76b-91f46b37f90d",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/SequencingDevice"
]
},
"deviceName": [
{
"name": "NextSeq_500",
"type": "model-name"
}
],
"type": {
"coding": [
{
"system": "https://demis.rki.de/fhir/igs/CodeSystem/sequencingPlatform",
"code": "illumina",
"display": "Illumina is 4-channel flowgram with 1-to-1 mapping between basecalls and flows"
}
]
}
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/MolecularSequence/485c4dc4-c5a6-31b0-a4fa-6420bcec319a",
"resource": {
"resourceType": "MolecularSequence",
"id": "485c4dc4-c5a6-31b0-a4fa-6420bcec319a",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/Sequence"
]
},
"extension": [
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceAuthor",
"valueString": "Stefan Niemann, Thomas Kohl"
},
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/SequencingReason",
"valueCoding": {
"system": "http://snomed.info/sct",
"code": "74964007",
"display": "Other (qualifier value)"
}
},
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceDocumentReference",
"valueReference": {
"reference": "https://demis.rki.de/fhir/igs/DocumentReference/e4fd02c2-60de-407a-8ecf-6f346a4a8e61",
"type": "DocumentReference"
}
},
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceDocumentReference",
"valueReference": {
"reference": "https://demis.rki.de/fhir/igs/DocumentReference/f598e039-bce3-4452-b520-09a903503adc",
"type": "DocumentReference"
}
}
],
"identifier": [
{
"value": "20004726_lib32570"
}
],
"type": "dna",
"coordinateSystem": 0,
"specimen": {
"reference": "Specimen/6007857d-46b3-3eaf-84bf-c245aed6c346"
},
"device": {
"reference": "Device/213c2363-6959-3ef1-a76b-91f46b37f90d"
},
"performer": {
"reference": "Organization/08c4e143-1125-3f11-a1d5-1586fc5e2e31"
},
"repository": [
{
"extension": [
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceUploadDate",
"valueDateTime": "2023-03-07"
},
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceUploadSubmitter",
"valueString": "FZB"
},
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceUploadStatus",
"valueCoding": {
"system": "http://snomed.info/sct",
"code": "385645004"
}
}
],
"type": "directlink",
"url": "https://www.ebi.ac.uk/ena/browser/view/ERR11049438",
"name": "ena",
"datasetId": "ERR11049438"
}
]
}
}
]
}