FHIR IG analytics| Package | rki.demis.igs |
| Resource Type | Bundle |
| Id | example-bundle-notificationbundlesequence-03.json |
| FHIR Version | R4 |
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No resources found
No narrative content found in resource
FHIR
FHIRsmith{
"resourceType": "Bundle",
"meta": {
"lastUpdated": "2023-01-14T08:16:01+01:00",
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/NotificationBundleSequence"
]
},
"identifier": {
"system": "https://demis.rki.de/fhir/NamingSystem/NotificationBundleId",
"value": "fb8d651b-3305-34b9-9e7f-a7809b62767d"
},
"type": "document",
"timestamp": "2023-01-14T08:16:01+01:00",
"entry": [
{
"fullUrl": "https://demis.rki.de/fhir/igs/Composition/4a19589d-3ae8-3439-baea-b2e0f60a98b2",
"resource": {
"resourceType": "Composition",
"id": "4a19589d-3ae8-3439-baea-b2e0f60a98b2",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/NotificationSequence"
]
},
"identifier": {
"system": "https://demis.rki.de/fhir/NamingSystem/NotificationId",
"value": "d1c9252a-9809-4f17-bc59-16d6b2abaaae"
},
"status": "final",
"type": {
"coding": [
{
"system": "http://loinc.org",
"code": "34782-3",
"display": "Infectious disease Note"
}
]
},
"category": [
{
"coding": [
{
"system": "http://loinc.org",
"code": "11502-2",
"display": "Laboratory report"
}
]
}
],
"subject": {
"reference": "Patient/3661f735-d3db-3c22-909d-3a16a7334c1d"
},
"date": "2023-01-14T08:16:00.000+01:00",
"author": [
{
"reference": "PractitionerRole/c92c9646-e0c8-3c3d-840c-33e505648a5c"
}
],
"title": "Sequenzmeldung",
"relatesTo": [
{
"code": "appends",
"targetReference": {
"type": "Composition",
"identifier": {
"system": "https://demis.rki.de/fhir/NamingSystem/NotificationId",
"value": "f8585efb-1872-4a4f-b88d-8c889e93487b"
}
}
}
],
"section": [
{
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "11502-2",
"display": "Laboratory report"
}
]
},
"entry": [
{
"reference": "DiagnosticReport/2e24f26e-c450-301c-ac1e-da2205a69e39"
}
]
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Patient/3661f735-d3db-3c22-909d-3a16a7334c1d",
"resource": {
"resourceType": "Patient",
"id": "3661f735-d3db-3c22-909d-3a16a7334c1d",
"meta": {
"profile": [
"https://demis.rki.de/fhir/StructureDefinition/NotifiedPersonAnonymous"
]
},
"gender": "male",
"birthDate": "1978-12",
"address": [
{
"extension": [
{
"url": "https://demis.rki.de/fhir/StructureDefinition/AddressUse",
"valueCoding": {
"system": "https://demis.rki.de/fhir/CodeSystem/addressUse",
"code": "primary"
}
}
],
"postalCode": "130"
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/PractitionerRole/c92c9646-e0c8-3c3d-840c-33e505648a5c",
"resource": {
"resourceType": "PractitionerRole",
"id": "c92c9646-e0c8-3c3d-840c-33e505648a5c",
"meta": {
"profile": [
"https://demis.rki.de/fhir/StructureDefinition/NotifierRole"
]
},
"organization": {
"reference": "Organization/227a66a4-a2fe-34b9-ad24-55981d0d1d82"
}
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Organization/227a66a4-a2fe-34b9-ad24-55981d0d1d82",
"resource": {
"resourceType": "Organization",
"id": "227a66a4-a2fe-34b9-ad24-55981d0d1d82",
"meta": {
"profile": [
"https://demis.rki.de/fhir/StructureDefinition/NotifierFacility"
]
},
"identifier": [
{
"system": "https://demis.rki.de/fhir/NamingSystem/DemisLaboratoryId",
"value": "10285"
}
],
"type": [
{
"coding": [
{
"system": "https://demis.rki.de/fhir/CodeSystem/organizationType",
"code": "refLab",
"display": "Einrichtung der Spezialdiagnostik"
}
]
}
],
"name": "Nationales Referenzzentrum für Influenza, FG17, RKI",
"telecom": [
{
"system": "email",
"value": "NRZ-Influenza@rki.de",
"use": "work"
}
],
"address": [
{
"line": [
"Seestr. 10"
],
"city": "Berlin",
"postalCode": "13353",
"country": "DE"
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/PractitionerRole/d1b92d45-3811-3064-bad7-b3336e70e08c",
"resource": {
"resourceType": "PractitionerRole",
"id": "d1b92d45-3811-3064-bad7-b3336e70e08c",
"meta": {
"profile": [
"https://demis.rki.de/fhir/StructureDefinition/SubmittingRole"
]
},
"organization": {
"reference": "Organization/a42f380e-b23a-3f50-a096-26665a6e4257"
}
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Organization/a42f380e-b23a-3f50-a096-26665a6e4257",
"resource": {
"resourceType": "Organization",
"id": "a42f380e-b23a-3f50-a096-26665a6e4257",
"meta": {
"profile": [
"https://demis.rki.de/fhir/StructureDefinition/SubmittingFacility"
]
},
"identifier": [
{
"system": "https://fhir.kbv.de/NamingSystem/KBV_NS_Base_BSNR",
"value": "987654321"
}
],
"name": "Primärlabor",
"telecom": [
{
"system": "phone",
"value": "03098765410",
"use": "work"
},
{
"system": "fax",
"value": "03098765411",
"use": "work"
},
{
"system": "email",
"value": "ifsg@primaerlabor-gibt-es-nicht.de",
"use": "work"
},
{
"system": "url",
"value": "http://primaerlabor-gibt-es-nicht.de",
"use": "work"
}
],
"address": [
{
"line": [
"Dingsweg 321"
],
"city": "Berlin",
"postalCode": "13055",
"country": "DE"
}
],
"contact": [
{
"name": {
"use": "official",
"family": "Kontakt",
"given": [
"Caroline"
]
}
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/DiagnosticReport/2e24f26e-c450-301c-ac1e-da2205a69e39",
"resource": {
"resourceType": "DiagnosticReport",
"id": "2e24f26e-c450-301c-ac1e-da2205a69e39",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/LaboratoryReportSequence"
]
},
"status": "final",
"code": {
"coding": [
{
"system": "https://demis.rki.de/fhir/CodeSystem/notificationCategory",
"code": "cvdp",
"display": "Severe-Acute-Respiratory-Syndrome-Coronavirus-2 (SARS-CoV-2)"
}
]
},
"subject": {
"reference": "Patient/3661f735-d3db-3c22-909d-3a16a7334c1d"
},
"issued": "2023-01-14T08:15:00+01:00",
"result": [
{
"reference": "Observation/30aefd63-f71c-39b2-9191-8c162310c9c2"
}
],
"conclusion": "NACHWEIS eines meldepflichtigen Erregers",
"conclusionCode": [
{
"coding": [
{
"system": "https://demis.rki.de/fhir/CodeSystem/conclusionCode",
"code": "pathogenDetected",
"display": "Meldepflichtiger Erreger nachgewiesen"
}
]
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Observation/30aefd63-f71c-39b2-9191-8c162310c9c2",
"resource": {
"resourceType": "Observation",
"id": "30aefd63-f71c-39b2-9191-8c162310c9c2",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/PathogenDetectionSequence"
]
},
"status": "final",
"category": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/observation-category",
"code": "laboratory"
}
]
}
],
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "96741-4",
"display": "SARS-CoV-2 (COVID-19) variant Sequencing Nom (Specimen)"
}
]
},
"subject": {
"reference": "Patient/3661f735-d3db-3c22-909d-3a16a7334c1d"
},
"valueString": "BA.5.1.28",
"interpretation": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation",
"code": "POS"
}
]
}
],
"method": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "117040002",
"display": "Nucleic acid sequencing (procedure)"
}
]
},
"specimen": {
"reference": "Specimen/43b3b82f-656f-3e3d-a510-0109771c9e97"
},
"device": {
"reference": "Device/b075aba8-edcb-38f7-973a-6ba64b240a3e"
},
"derivedFrom": [
{
"reference": "MolecularSequence/26038f18-8c2d-3ad7-90e6-f52cfd779262"
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Specimen/43b3b82f-656f-3e3d-a510-0109771c9e97",
"resource": {
"resourceType": "Specimen",
"id": "43b3b82f-656f-3e3d-a510-0109771c9e97",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/SpecimenSequence"
]
},
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "258604001",
"display": "Upper respiratory specimen (specimen)"
}
]
},
"subject": {
"reference": "Patient/3661f735-d3db-3c22-909d-3a16a7334c1d"
},
"receivedTime": "2022-12-29T15:40:00.000+01:00",
"collection": {
"collector": {
"reference": "PractitionerRole/d1b92d45-3811-3064-bad7-b3336e70e08c"
},
"collectedDateTime": "2022-12-29T09:50:00.000+01:00"
},
"processing": [
{
"description": "ARTICv4",
"procedure": {
"coding": [
{
"system": "https://demis.rki.de/fhir/igs/CodeSystem/sequencingStrategy",
"code": "amplicon"
}
]
},
"timeDateTime": "2023-01-13T10:40:00.000+01:00"
}
]
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/Device/b075aba8-edcb-38f7-973a-6ba64b240a3e",
"resource": {
"resourceType": "Device",
"id": "b075aba8-edcb-38f7-973a-6ba64b240a3e",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/SequencingDevice"
]
},
"deviceName": [
{
"name": "GridION",
"type": "model-name"
}
],
"type": {
"coding": [
{
"system": "https://demis.rki.de/fhir/igs/CodeSystem/sequencingPlatform",
"code": "oxford_nanopore",
"display": "Oxford Nanopore platform type. nanopore-based electronic single molecule analysis."
}
]
}
}
},
{
"fullUrl": "https://demis.rki.de/fhir/igs/MolecularSequence/26038f18-8c2d-3ad7-90e6-f52cfd779262",
"resource": {
"resourceType": "MolecularSequence",
"id": "26038f18-8c2d-3ad7-90e6-f52cfd779262",
"meta": {
"profile": [
"https://demis.rki.de/fhir/igs/StructureDefinition/Sequence"
]
},
"extension": [
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceAuthor",
"valueString": "Ralf Dürrwald, Stephan Fuchs, Stefan Kroeger, Marianne Wedde, Oliver Drechsel, Aleksandar Radonic, Rene Kmiecinski, Thorsten Wolff"
},
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/SequencingReason",
"valueCoding": {
"system": "http://snomed.info/sct",
"code": "255226008",
"display": "Random (qualifier value)"
}
},
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceDocumentReference",
"valueReference": {
"reference": "https://demis.rki.de/fhir/igs/DocumentReference/ecd3f1f0-b6b6-46e0-b721-2d9869ab8195",
"type": "DocumentReference"
}
}
],
"identifier": [
{
"value": "A384"
}
],
"type": "dna",
"coordinateSystem": 0,
"specimen": {
"reference": "Specimen/43b3b82f-656f-3e3d-a510-0109771c9e97"
},
"device": {
"reference": "Device/b075aba8-edcb-38f7-973a-6ba64b240a3e"
},
"performer": {
"reference": "Organization/227a66a4-a2fe-34b9-ad24-55981d0d1d82"
},
"repository": [
{
"extension": [
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceUploadDate",
"valueDateTime": "2023-02-10"
},
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceUploadSubmitter",
"valueString": "O Drechsel"
},
{
"url": "https://demis.rki.de/fhir/igs/StructureDefinition/SequenceUploadStatus",
"valueCoding": {
"system": "http://snomed.info/sct",
"code": "385645004"
}
}
],
"type": "other",
"name": "gisaid",
"datasetId": "EPI_ISL_16883504"
}
]
}
}
]
}