FHIR IG analytics| Package | pc.ig |
| Resource Type | StructureDefinition |
| Id | StructureDefinition-pc-variant-occurrence-lm.json |
| FHIR Version | R4 |
| Source | https://build.fhir.org/ig/hl7-eu/protect-child/StructureDefinition-pc-variant-occurrence-lm.html |
| URL | https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pc-variant-occurrence-lm |
| Version | 0.1.0-ci-build |
| Status | draft |
| Date | 2026-02-09T17:40:58+00:00 |
| Name | PcVariantOccurrence |
| Title | VariantOccurrence logical model |
| Description | Logical model representing the PROTECT-CHILD data model entity `variant_occurrence`. |
| Type | https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pc-variant-occurrence-lm |
| Kind | logical |
No resources found
No resources found
Note: links and images are rebased to the (stated) source
Generated Narrative: StructureDefinition pc-variant-occurrence-lm
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
  pc-variant-occurrence-lm | 0..* | Base | VariantOccurrence logical model | |
  variantOccurrenceId | 1..1 | string | Variant occurrence id | |
| targetRegionId | 0..1 | string | Target region id | |
| referenceSequence | 0..1 | string | Reference sequence | |
| rsId | 0..1 | string | Rs id | |
| referenceAllele | 0..1 | string | Reference allele | |
| alternateAllele | 0..1 | string | Alternate allele | |
| hgvsC | 0..1 | string | Hgvs c | |
| hgvsP | 0..1 | string | Hgvs p | |
| variantReadDepth | 0..1 | integer | Variant read depth | |
| variantExonNumber | 0..1 | integer | Variant exon number | |
| copyNumber | 0..1 | decimal | Copy number | |
| cnvLocus | 0..1 | string | Cnv locus | |
| fusionBreakpoint | 0..1 | string | Fusion breakpoint | |
| fusionSupportingReads | 0..1 | integer | Fusion supporting reads | |
| sequenceAlteration | 0..1 | string | Sequence alteration | |
| variantFeature | 0..1 | string | Variant feature | |
| geneticOrigin | 0..1 | string | Genetic origin | |
  genotype | 0..1 | CodeableConcept | Genotype | |
| Documentation for this format | ||||
FHIR
FHIRsmith{
"resourceType": "StructureDefinition",
"id": "pc-variant-occurrence-lm",
"text": {
"status": "extensions",
"div": "<!-- snip (see above) -->"
},
"url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pc-variant-occurrence-lm",
"version": "0.1.0-ci-build",
"name": "PcVariantOccurrence",
"title": "VariantOccurrence logical model",
"status": "draft",
"date": "2026-02-09T17:40:58+00:00",
"publisher": "Protect Child",
"contact": [
{
"name": "Protect Child",
"telecom": [
{
"system": "url",
"value": "https://protect-child.eu/"
}
]
}
],
"description": "Logical model representing the PROTECT-CHILD data model entity `variant_occurrence`.",
"fhirVersion": "4.0.1",
"kind": "logical",
"abstract": false,
"type": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pc-variant-occurrence-lm",
"baseDefinition": "http://hl7.org/fhir/StructureDefinition/Base",
"derivation": "specialization",
"snapshot": {
"extension": [
{
"url": "http://hl7.org/fhir/tools/StructureDefinition/snapshot-base-version",
"valueString": "4.0.1"
}
],
"element": [
{
"id": "pc-variant-occurrence-lm",
"path": "pc-variant-occurrence-lm",
"short": "VariantOccurrence logical model",
"definition": "Logical model representing the PROTECT-CHILD data model entity `variant_occurrence`.",
"min": 0,
"max": "*",
"base": {
"path": "Base",
"min": 0,
"max": "*"
},
"isModifier": false
},
{
"id": "pc-variant-occurrence-lm.variantOccurrenceId",
"path": "pc-variant-occurrence-lm.variantOccurrenceId",
"short": "Variant occurrence id",
"definition": "Field `variant_occurrence_id` from the PROTECT-CHILD data model.",
"min": 1,
"max": "1",
"base": {
"path": "pc-variant-occurrence-lm.variantOccurrenceId",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.targetRegionId",
"path": "pc-variant-occurrence-lm.targetRegionId",
"short": "Target region id",
"definition": "Field `target_region_id` from the PROTECT-CHILD data model. Foreign key to `target_region`.",
"min": 0,
"max": "1",
"base": {
"path": "pc-variant-occurrence-lm.targetRegionId",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.referenceSequence",
"path": "pc-variant-occurrence-lm.referenceSequence",
"short": "Reference sequence",
"definition": "Field `reference_sequence` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-variant-occurrence-lm.referenceSequence",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.rsId",
"path": "pc-variant-occurrence-lm.rsId",
"short": "Rs id",
"definition": "Field `rs_id` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-variant-occurrence-lm.rsId",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.referenceAllele",
"path": "pc-variant-occurrence-lm.referenceAllele",
"short": "Reference allele",
"definition": "Field `reference_allele` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-variant-occurrence-lm.referenceAllele",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.alternateAllele",
"path": "pc-variant-occurrence-lm.alternateAllele",
"short": "Alternate allele",
"definition": "Field `alternate_allele` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-variant-occurrence-lm.alternateAllele",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.hgvsC",
"path": "pc-variant-occurrence-lm.hgvsC",
"short": "Hgvs c",
"definition": "Field `hgvs_c` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-variant-occurrence-lm.hgvsC",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.hgvsP",
"path": "pc-variant-occurrence-lm.hgvsP",
"short": "Hgvs p",
"definition": "Field `hgvs_p` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-variant-occurrence-lm.hgvsP",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.variantReadDepth",
"path": "pc-variant-occurrence-lm.variantReadDepth",
"short": "Variant read depth",
"definition": "Field `variant_read_depth` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-variant-occurrence-lm.variantReadDepth",
"min": 0,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
},
{
"id": "pc-variant-occurrence-lm.variantExonNumber",
"path": "pc-variant-occurrence-lm.variantExonNumber",
"short": "Variant exon number",
"definition": "Field `variant_exon_number` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-variant-occurrence-lm.variantExonNumber",
"min": 0,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
},
{
"id": "pc-variant-occurrence-lm.copyNumber",
"path": "pc-variant-occurrence-lm.copyNumber",
"short": "Copy number",
"definition": "Field `copy_number` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-variant-occurrence-lm.copyNumber",
"min": 0,
"max": "1"
},
"type": [
{
"code": "decimal"
}
]
},
{
"id": "pc-variant-occurrence-lm.cnvLocus",
"path": "pc-variant-occurrence-lm.cnvLocus",
"short": "Cnv locus",
"definition": "Field `cnv_locus` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-variant-occurrence-lm.cnvLocus",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.fusionBreakpoint",
"path": "pc-variant-occurrence-lm.fusionBreakpoint",
"short": "Fusion breakpoint",
"definition": "Field `fusion_breakpoint` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-variant-occurrence-lm.fusionBreakpoint",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.fusionSupportingReads",
"path": "pc-variant-occurrence-lm.fusionSupportingReads",
"short": "Fusion supporting reads",
"definition": "Field `fusion_supporting_reads` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-variant-occurrence-lm.fusionSupportingReads",
"min": 0,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
},
{
"id": "pc-variant-occurrence-lm.sequenceAlteration",
"path": "pc-variant-occurrence-lm.sequenceAlteration",
"short": "Sequence alteration",
"definition": "Field `sequence_alteration` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-variant-occurrence-lm.sequenceAlteration",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.variantFeature",
"path": "pc-variant-occurrence-lm.variantFeature",
"short": "Variant feature",
"definition": "Field `variant_feature` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-variant-occurrence-lm.variantFeature",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.geneticOrigin",
"path": "pc-variant-occurrence-lm.geneticOrigin",
"short": "Genetic origin",
"definition": "Field `genetic_origin` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-variant-occurrence-lm.geneticOrigin",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.genotype",
"path": "pc-variant-occurrence-lm.genotype",
"short": "Genotype",
"definition": "Field `genotype` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-variant-occurrence-lm.genotype",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
]
}
]
},
"differential": {
"element": [
{
"id": "pc-variant-occurrence-lm",
"path": "pc-variant-occurrence-lm",
"short": "VariantOccurrence logical model",
"definition": "Logical model representing the PROTECT-CHILD data model entity `variant_occurrence`."
},
{
"id": "pc-variant-occurrence-lm.variantOccurrenceId",
"path": "pc-variant-occurrence-lm.variantOccurrenceId",
"short": "Variant occurrence id",
"definition": "Field `variant_occurrence_id` from the PROTECT-CHILD data model.",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.targetRegionId",
"path": "pc-variant-occurrence-lm.targetRegionId",
"short": "Target region id",
"definition": "Field `target_region_id` from the PROTECT-CHILD data model. Foreign key to `target_region`.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.referenceSequence",
"path": "pc-variant-occurrence-lm.referenceSequence",
"short": "Reference sequence",
"definition": "Field `reference_sequence` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.rsId",
"path": "pc-variant-occurrence-lm.rsId",
"short": "Rs id",
"definition": "Field `rs_id` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.referenceAllele",
"path": "pc-variant-occurrence-lm.referenceAllele",
"short": "Reference allele",
"definition": "Field `reference_allele` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.alternateAllele",
"path": "pc-variant-occurrence-lm.alternateAllele",
"short": "Alternate allele",
"definition": "Field `alternate_allele` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.hgvsC",
"path": "pc-variant-occurrence-lm.hgvsC",
"short": "Hgvs c",
"definition": "Field `hgvs_c` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.hgvsP",
"path": "pc-variant-occurrence-lm.hgvsP",
"short": "Hgvs p",
"definition": "Field `hgvs_p` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.variantReadDepth",
"path": "pc-variant-occurrence-lm.variantReadDepth",
"short": "Variant read depth",
"definition": "Field `variant_read_depth` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "integer"
}
]
},
{
"id": "pc-variant-occurrence-lm.variantExonNumber",
"path": "pc-variant-occurrence-lm.variantExonNumber",
"short": "Variant exon number",
"definition": "Field `variant_exon_number` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "integer"
}
]
},
{
"id": "pc-variant-occurrence-lm.copyNumber",
"path": "pc-variant-occurrence-lm.copyNumber",
"short": "Copy number",
"definition": "Field `copy_number` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "decimal"
}
]
},
{
"id": "pc-variant-occurrence-lm.cnvLocus",
"path": "pc-variant-occurrence-lm.cnvLocus",
"short": "Cnv locus",
"definition": "Field `cnv_locus` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.fusionBreakpoint",
"path": "pc-variant-occurrence-lm.fusionBreakpoint",
"short": "Fusion breakpoint",
"definition": "Field `fusion_breakpoint` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.fusionSupportingReads",
"path": "pc-variant-occurrence-lm.fusionSupportingReads",
"short": "Fusion supporting reads",
"definition": "Field `fusion_supporting_reads` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "integer"
}
]
},
{
"id": "pc-variant-occurrence-lm.sequenceAlteration",
"path": "pc-variant-occurrence-lm.sequenceAlteration",
"short": "Sequence alteration",
"definition": "Field `sequence_alteration` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.variantFeature",
"path": "pc-variant-occurrence-lm.variantFeature",
"short": "Variant feature",
"definition": "Field `variant_feature` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.geneticOrigin",
"path": "pc-variant-occurrence-lm.geneticOrigin",
"short": "Genetic origin",
"definition": "Field `genetic_origin` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-variant-occurrence-lm.genotype",
"path": "pc-variant-occurrence-lm.genotype",
"short": "Genotype",
"definition": "Field `genotype` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "CodeableConcept"
}
]
}
]
}
}