FHIR IG analytics| Package | pc.ig |
| Resource Type | StructureDefinition |
| Id | StructureDefinition-pc-genomic-test-lm.json |
| FHIR Version | R4 |
| Source | https://build.fhir.org/ig/hl7-eu/protect-child/StructureDefinition-pc-genomic-test-lm.html |
| URL | https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pc-genomic-test-lm |
| Version | 0.1.0-ci-build |
| Status | draft |
| Date | 2026-02-09T17:40:58+00:00 |
| Name | PcGenomicTest |
| Title | GenomicTest logical model |
| Description | Logical model representing the PROTECT-CHILD data model entity `genomic_test`. |
| Type | https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pc-genomic-test-lm |
| Kind | logical |
No resources found
No resources found
Note: links and images are rebased to the (stated) source
Generated Narrative: StructureDefinition pc-genomic-test-lm
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
  pc-genomic-test-lm | 0..* | Base | GenomicTest logical model | |
  genomicTestId | 1..1 | string | Genomic test id | |
| referenceGenomeId | 0..1 | string | Reference genome id | |
| testName | 0..1 | string | Test name | |
| testVersion | 0..1 | string | Test version | |
| sequencingDevice | 0..1 | string | Sequencing device | |
| targetCapture | 0..1 | string | Target capture | |
 readType | 0..1 | CodeableConcept | Read type | |
| readLength | 0..1 | integer | Read length | |
| meanTargetCoverage | 0..1 | decimal | Mean target coverage | |
| perTargetBaseCover100x | 0..1 | decimal | Per target base cover 100x | |
| alignmentTools | 0..1 | string | Alignment tools | |
| variantCallingTools | 0..1 | string | Variant calling tools | |
| chromosomeCorrdinate | 0..1 | string | Chromosome corrdinate | |
| annotationTools | 0..1 | string | Annotation tools | |
 annotationDatabases | 0..1 | string | Annotation databases | |
| Documentation for this format | ||||
FHIR
FHIRsmith{
"resourceType": "StructureDefinition",
"id": "pc-genomic-test-lm",
"text": {
"status": "extensions",
"div": "<!-- snip (see above) -->"
},
"url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pc-genomic-test-lm",
"version": "0.1.0-ci-build",
"name": "PcGenomicTest",
"title": "GenomicTest logical model",
"status": "draft",
"date": "2026-02-09T17:40:58+00:00",
"publisher": "Protect Child",
"contact": [
{
"name": "Protect Child",
"telecom": [
{
"system": "url",
"value": "https://protect-child.eu/"
}
]
}
],
"description": "Logical model representing the PROTECT-CHILD data model entity `genomic_test`.",
"fhirVersion": "4.0.1",
"kind": "logical",
"abstract": false,
"type": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pc-genomic-test-lm",
"baseDefinition": "http://hl7.org/fhir/StructureDefinition/Base",
"derivation": "specialization",
"snapshot": {
"extension": [
{
"url": "http://hl7.org/fhir/tools/StructureDefinition/snapshot-base-version",
"valueString": "4.0.1"
}
],
"element": [
{
"id": "pc-genomic-test-lm",
"path": "pc-genomic-test-lm",
"short": "GenomicTest logical model",
"definition": "Logical model representing the PROTECT-CHILD data model entity `genomic_test`.",
"min": 0,
"max": "*",
"base": {
"path": "Base",
"min": 0,
"max": "*"
},
"isModifier": false
},
{
"id": "pc-genomic-test-lm.genomicTestId",
"path": "pc-genomic-test-lm.genomicTestId",
"short": "Genomic test id",
"definition": "Field `genomic_test_id` from the PROTECT-CHILD data model. Foreign key to `bio_sample`.",
"min": 1,
"max": "1",
"base": {
"path": "pc-genomic-test-lm.genomicTestId",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.referenceGenomeId",
"path": "pc-genomic-test-lm.referenceGenomeId",
"short": "Reference genome id",
"definition": "Field `reference_genome_id` from the PROTECT-CHILD data model. Foreign key to `reference_genome`.",
"min": 0,
"max": "1",
"base": {
"path": "pc-genomic-test-lm.referenceGenomeId",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.testName",
"path": "pc-genomic-test-lm.testName",
"short": "Test name",
"definition": "Field `test_name` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-genomic-test-lm.testName",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.testVersion",
"path": "pc-genomic-test-lm.testVersion",
"short": "Test version",
"definition": "Field `test_version` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-genomic-test-lm.testVersion",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.sequencingDevice",
"path": "pc-genomic-test-lm.sequencingDevice",
"short": "Sequencing device",
"definition": "Field `sequencing_device` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-genomic-test-lm.sequencingDevice",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.targetCapture",
"path": "pc-genomic-test-lm.targetCapture",
"short": "Target capture",
"definition": "Field `target_capture` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-genomic-test-lm.targetCapture",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.readType",
"path": "pc-genomic-test-lm.readType",
"short": "Read type",
"definition": "Field `read_type` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-genomic-test-lm.readType",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
]
},
{
"id": "pc-genomic-test-lm.readLength",
"path": "pc-genomic-test-lm.readLength",
"short": "Read length",
"definition": "Field `read_length` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-genomic-test-lm.readLength",
"min": 0,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
},
{
"id": "pc-genomic-test-lm.meanTargetCoverage",
"path": "pc-genomic-test-lm.meanTargetCoverage",
"short": "Mean target coverage",
"definition": "Field `mean_target_coverage` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-genomic-test-lm.meanTargetCoverage",
"min": 0,
"max": "1"
},
"type": [
{
"code": "decimal"
}
]
},
{
"id": "pc-genomic-test-lm.perTargetBaseCover100x",
"path": "pc-genomic-test-lm.perTargetBaseCover100x",
"short": "Per target base cover 100x",
"definition": "Field `per_target_base_cover_100x` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-genomic-test-lm.perTargetBaseCover100x",
"min": 0,
"max": "1"
},
"type": [
{
"code": "decimal"
}
]
},
{
"id": "pc-genomic-test-lm.alignmentTools",
"path": "pc-genomic-test-lm.alignmentTools",
"short": "Alignment tools",
"definition": "Field `alignment_tools` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-genomic-test-lm.alignmentTools",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.variantCallingTools",
"path": "pc-genomic-test-lm.variantCallingTools",
"short": "Variant calling tools",
"definition": "Field `variant_calling_tools` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-genomic-test-lm.variantCallingTools",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.chromosomeCorrdinate",
"path": "pc-genomic-test-lm.chromosomeCorrdinate",
"short": "Chromosome corrdinate",
"definition": "Field `chromosome_corrdinate` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-genomic-test-lm.chromosomeCorrdinate",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.annotationTools",
"path": "pc-genomic-test-lm.annotationTools",
"short": "Annotation tools",
"definition": "Field `annotation_tools` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-genomic-test-lm.annotationTools",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.annotationDatabases",
"path": "pc-genomic-test-lm.annotationDatabases",
"short": "Annotation databases",
"definition": "Field `annotation_databases` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"base": {
"path": "pc-genomic-test-lm.annotationDatabases",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
}
]
},
"differential": {
"element": [
{
"id": "pc-genomic-test-lm",
"path": "pc-genomic-test-lm",
"short": "GenomicTest logical model",
"definition": "Logical model representing the PROTECT-CHILD data model entity `genomic_test`."
},
{
"id": "pc-genomic-test-lm.genomicTestId",
"path": "pc-genomic-test-lm.genomicTestId",
"short": "Genomic test id",
"definition": "Field `genomic_test_id` from the PROTECT-CHILD data model. Foreign key to `bio_sample`.",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.referenceGenomeId",
"path": "pc-genomic-test-lm.referenceGenomeId",
"short": "Reference genome id",
"definition": "Field `reference_genome_id` from the PROTECT-CHILD data model. Foreign key to `reference_genome`.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.testName",
"path": "pc-genomic-test-lm.testName",
"short": "Test name",
"definition": "Field `test_name` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.testVersion",
"path": "pc-genomic-test-lm.testVersion",
"short": "Test version",
"definition": "Field `test_version` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.sequencingDevice",
"path": "pc-genomic-test-lm.sequencingDevice",
"short": "Sequencing device",
"definition": "Field `sequencing_device` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.targetCapture",
"path": "pc-genomic-test-lm.targetCapture",
"short": "Target capture",
"definition": "Field `target_capture` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.readType",
"path": "pc-genomic-test-lm.readType",
"short": "Read type",
"definition": "Field `read_type` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "CodeableConcept"
}
]
},
{
"id": "pc-genomic-test-lm.readLength",
"path": "pc-genomic-test-lm.readLength",
"short": "Read length",
"definition": "Field `read_length` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "integer"
}
]
},
{
"id": "pc-genomic-test-lm.meanTargetCoverage",
"path": "pc-genomic-test-lm.meanTargetCoverage",
"short": "Mean target coverage",
"definition": "Field `mean_target_coverage` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "decimal"
}
]
},
{
"id": "pc-genomic-test-lm.perTargetBaseCover100x",
"path": "pc-genomic-test-lm.perTargetBaseCover100x",
"short": "Per target base cover 100x",
"definition": "Field `per_target_base_cover_100x` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "decimal"
}
]
},
{
"id": "pc-genomic-test-lm.alignmentTools",
"path": "pc-genomic-test-lm.alignmentTools",
"short": "Alignment tools",
"definition": "Field `alignment_tools` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.variantCallingTools",
"path": "pc-genomic-test-lm.variantCallingTools",
"short": "Variant calling tools",
"definition": "Field `variant_calling_tools` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.chromosomeCorrdinate",
"path": "pc-genomic-test-lm.chromosomeCorrdinate",
"short": "Chromosome corrdinate",
"definition": "Field `chromosome_corrdinate` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.annotationTools",
"path": "pc-genomic-test-lm.annotationTools",
"short": "Annotation tools",
"definition": "Field `annotation_tools` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "pc-genomic-test-lm.annotationDatabases",
"path": "pc-genomic-test-lm.annotationDatabases",
"short": "Annotation databases",
"definition": "Field `annotation_databases` from the PROTECT-CHILD data model.",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
}
]
}
}