FHIRsmith: Observation/Observation-microbiology-example-1.json

FHIR IG analytics

Package	pc.ig
Resource Type	Observation
Id	Observation-microbiology-example-1.json
FHIR Version	R4

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Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: Observation microbiology-example-1

Profile: Microbiology

Blood EBV-DNA: 2450

EBV serology IgM anti-EA: false

EBV serology IgM anti-VCA: false

EBV serology IgG anti-VCA: true

EBV serology IgG EBNA: true

Blood CMV-DNA: false

CMV serology IgM: false

CMV serology IgG: true

Blood Parvovirus B19-DNA: false

Parvovirus B19 serology IgG: true

Parvovirus B19 serology IgM: false

HSV serology IgG: true

HSV serology IgM: false

Adenovirus serology IgG: true

Adenovirus serology IgM: false

VZV serology IgG: true

VZV serology IgM: false

Blood BKV-DNA: false

Urine BKV-DNA: false

BKV-DNA on kidney biopsy: false

BKV FISH on kidney biopsy: false

Patient ID relationship: Anonymous Patient Female, DoB: 2015-06-15 ( https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ids/recipient#REC-001)

identifier: https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/microbiology-id/M0001

status: Final

code: Microbiology studies (set)

subject: Anonymous Patient Female, DoB: 2015-06-15 ( https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ids/recipient#REC-001)

Source1

{
  "resourceType": "Observation",
  "id": "microbiology-example-1",
  "meta": {
    "profile": [
      "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology"
    ]
  },
  "text": {
    "status": "extensions",
    "div": "<!-- snip (see above) -->"
  },
  "extension": [
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-ebv-dna",
      "valueDecimal": 2450
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-ebv-igm-anti-ea",
      "valueBoolean": false
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-ebv-igm-anti-vca",
      "valueBoolean": false
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-ebv-igg-anti-vca",
      "valueBoolean": true
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-ebv-igg-ebna",
      "valueBoolean": true
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-cmv-dna",
      "valueBoolean": false
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-cmv-igm",
      "valueBoolean": false
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-cmv-igg",
      "valueBoolean": true
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-parvovirus-b19-dna",
      "valueBoolean": false
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-parvovirus-b19-dna-igg",
      "valueBoolean": true
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-parvovirus-b19-dna-igm",
      "valueBoolean": false
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-hsv-igg",
      "valueBoolean": true
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-hsv-igm",
      "valueBoolean": false
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-adenovirus-igg",
      "valueBoolean": true
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-adenovirus-igm",
      "valueBoolean": false
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-vzv-igg",
      "valueBoolean": true
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-vzv-igm",
      "valueBoolean": false
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-blood-bkv-dna",
      "valueBoolean": false
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-urine-bkv-dna",
      "valueBoolean": false
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-bkv-dna-kidney-biopsy",
      "valueBoolean": false
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-bkv-fish-kidney-biopsy",
      "valueBoolean": false
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-patient-ref",
      "valueReference": {
        "reference": "Patient/ExamplePatientTransplant1"
      }
    }
  ],
  "identifier": [
    {
      "system": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/microbiology-id",
      "value": "M0001"
    }
  ],
  "status": "final",
  "code": {
    "coding": [
      {
        "system": "http://loinc.org",
        "code": "24323-8",
        "display": "Microbiology studies (set)"
      }
    ]
  },
  "subject": {
    "reference": "Patient/ExamplePatientTransplant1"
  }
}