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FHIR IG analytics

Packagepc.ig
Resource TypeBasic
IdBasic-methylomic-study-example-1.json
FHIR VersionR4

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Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: Basic methylomic-study-example-1

Reference genome ID relationship: Basic GRCh38

Target region ID: TR0001

Beta value: 0.72

M value: 1.85

Detection p-value: 0.0003

Read count: 250

Methylated reads: 180

identifier: https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/methylomic-study-id/MS0001

code: Locus-level methylomic record

Source1

{
  "resourceType": "Basic",
  "id": "methylomic-study-example-1",
  "meta": {
    "profile": [
      "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/methylomic-study"
    ]
  },
  "text": {
    "status": "extensions",
    "div": "<!-- snip (see above) -->"
  },
  "extension": [
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/methylomic-study-reference-genome-ref",
      "valueReference": {
        "reference": "Basic/reference-genome-grch38"
      }
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/methylomic-study-target-region-id",
      "valueString": "TR0001"
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/methylomic-study-beta-value",
      "valueDecimal": 0.72
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/methylomic-study-m-value",
      "valueDecimal": 1.85
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/methylomic-study-detection-p-value",
      "valueDecimal": 0.0003
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/methylomic-study-read-count",
      "valueInteger": 250
    },
    {
      "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/methylomic-study-methylated-reads",
      "valueInteger": 180
    }
  ],
  "identifier": [
    {
      "system": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/methylomic-study-id",
      "value": "MS0001"
    }
  ],
  "code": {
    "coding": [
      {
        "system": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/methylomic-study-type",
        "code": "locus",
        "display": "Locus-level methylomic record"
      }
    ]
  }
}