FHIR IG Statistics: StructureDefinition/zib-LaboratoryTestResult-Specimen-Isolate

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{
  "resourceType": "StructureDefinition",
  "id": "zib-LaboratoryTestResult-Specimen-Isolate",
  "url": "http://nictiz.nl/fhir/StructureDefinition/zib-LaboratoryTestResult-Specimen-Isolate",
  "version": "2.0.2",
  "name": "Zib LaboratoryTestResult Specimen Isolate",
  "title": "HCIM LaboratoryTestResult Specimen Isolate",
  "status": "active",
  "publisher": "Nictiz",
  "contact": [
    {
      "name": "Nictiz",
      "telecom": [
        {
          "system": "url",
          "value": "https://www.nictiz.nl",
          "use": "work"
        }
      ]
    }
  ],
  "description": "The Specimen Microorganism details from the LaboratoryTestResult as defined by the Dutch Health and Care Information models (Dutch: Zorginformatiebouwsteen or ZIB) version 4.1, release 2017.",
  "copyright": "CC0",
  "fhirVersion": "3.0.2",
  "mapping": [
    {
      "identity": "hcim-laboratorytestresult-v4.4-2019EN",
      "uri": "https://zibs.nl/wiki/LaboratoriumUitslag-v4.4(2019NL)",
      "name": "HCIM LaboratoryTestResult-v4.4(2019EN)"
    },
    {
      "identity": "hcim-laboratorytestresult-v4.1-2017EN",
      "uri": "https://zibs.nl/wiki/LaboratoryTestResult-v4.1(2017EN)",
      "name": "HCIM LaboratoryTestResult-v4.1(2017EN)"
    },
    {
      "identity": "hcim-laboratorytestresultfortransfer-v3.0-2016EN",
      "uri": "https://zibs.nl/wiki/LaboratoryTestResultForTransfer-v3.0(2016EN)",
      "name": "HCIM LaboratoryTestResultForTransfer-v3.0(2016EN)"
    },
    {
      "identity": "hcim-laboratorytestresultfortransfer-v1.2.2-2015EN",
      "uri": "https://zibs.nl/wiki/LaboratoryTestResultForTransfer-v1.2.2(2015EN)",
      "name": "HCIM LaboratoryTestResultForTransfer-v1.2.2(2015EN)"
    }
  ],
  "kind": "resource",
  "abstract": false,
  "type": "Specimen",
  "baseDefinition": "http://hl7.org/fhir/StructureDefinition/Specimen",
  "derivation": "constraint",
  "differential": {
    "element": [
      {
        "id": "Specimen",
        "path": "Specimen",
        "short": "Specimen",
        "definition": "A sample to be used for analysis. The HCIM LaboratoryTestResult only contains Specimen details at container and collection level. It is not prohibited, rather expected that other details will be present too.",
        "alias": [
          "Monster"
        ],
        "mapping": [
          {
            "identity": "hcim-laboratorytestresultfortransfer-v1.2.2-2015EN",
            "map": "NL-CM:13.1.2",
            "comment": "Specimen"
          },
          {
            "identity": "hcim-laboratorytestresultfortransfer-v3.0-2016EN",
            "map": "NL-CM:13.1.2",
            "comment": "Specimen"
          },
          {
            "identity": "hcim-laboratorytestresult-v4.1-2017EN",
            "map": "NL-CM:13.1.2",
            "comment": "Specimen"
          }
        ]
      },
      {
        "id": "Specimen.identifier",
        "path": "Specimen.identifier",
        "short": "SpecimenId",
        "definition": "Identification number of the material obtained, as a reference for inquiries to the source organization. In a transmural setting, this number will consist of a specimen number including the identification of the issuing organization, to be unique outside of the borders of an organization.",
        "alias": [
          "Monsternummer"
        ],
        "mapping": [
          {
            "identity": "hcim-laboratorytestresultfortransfer-v1.2.2-2015EN",
            "map": "NL-CM:13.1.15",
            "comment": "SpecimenNumber"
          },
          {
            "identity": "hcim-laboratorytestresultfortransfer-v3.0-2016EN",
            "map": "NL-CM:13.1.15",
            "comment": "SpecimenNumber"
          },
          {
            "identity": "hcim-laboratorytestresult-v4.1-2017EN",
            "map": "NL-CM:13.1.15",
            "comment": "SpecimenId"
          }
        ]
      },
      {
        "id": "Specimen.type",
        "path": "Specimen.type",
        "short": "Microorganism",
        "definition": "SpecimenMaterial describes the material obtained or the isolate that was derived from the material. If the LOINC test code also implicitly describes a material, this element may not conflict with the description. If desired, this component can provide a more detailed description of the material: LOINC codes only contain the materials at a main level. \r\nThis is in line with the agreements made in the IHE/Nictiz program e-Lab. \r\n \r\nIf the test is carried out on derived material (such as plasma), this element will still contain the material drawn (in this case, blood). In this case, the LOINC code will generally refer to plasma.",
        "alias": [
          "Microorganisme"
        ],
        "binding": {
          "strength": "extensible",
          "valueSetReference": {
            "reference": "http://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.10--20171231000000",
            "display": "MicroorganismeCodelijst"
          }
        },
        "mapping": [
          {
            "identity": "hcim-laboratorytestresult-v4.1-2017EN",
            "map": "NL-CM:13.1.22",
            "comment": "Microorganism"
          }
        ]
      },
      {
        "id": "Specimen.subject",
        "path": "Specimen.subject",
        "short": "SpecimenSource",
        "definition": "If the material is not collected directly from the patient but comes from a patient-related object, e.g. a cathetertip, this source of material can be recorded here.\r\n\r\nIn particular in microbiological determinations the subject of the test is an isolate of certain microorganism rather then a material. This concept provides the ability to capture information about this microorganism.",
        "alias": [
          "BronMonster"
        ],
        "type": [
          {
            "code": "Reference",
            "targetProfile": "http://fhir.nl/fhir/StructureDefinition/nl-core-patient"
          },
          {
            "code": "Reference",
            "targetProfile": "http://hl7.org/fhir/StructureDefinition/Group"
          },
          {
            "code": "Reference",
            "targetProfile": "http://nictiz.nl/fhir/StructureDefinition/zib-MedicalDeviceProduct"
          },
          {
            "code": "Reference",
            "targetProfile": "http://hl7.org/fhir/StructureDefinition/Substance"
          }
        ],
        "mapping": [
          {
            "identity": "hcim-laboratorytestresult-v4.1-2017EN",
            "map": "NL-CM:13.1.29",
            "comment": "SpecimenSource"
          }
        ]
      },
      {
        "id": "Specimen.receivedTime",
        "path": "Specimen.receivedTime",
        "short": "ReceivedDateTime",
        "definition": "Date and time that the material is handed over at the laboratory or specimen collection center. This is the issue with material that is collected by the patient himself.",
        "alias": [
          "AannameDatumTijd"
        ],
        "mapping": [
          {
            "identity": "hcim-laboratorytestresult-v4.1-2017EN",
            "map": "NL-CM:13.1.25",
            "comment": "ReceivedDateTime"
          }
        ]
      },
      {
        "id": "Specimen.parent",
        "path": "Specimen.parent",
        "type": [
          {
            "code": "Reference",
            "targetProfile": "http://nictiz.nl/fhir/StructureDefinition/zib-LaboratoryTestResult-Specimen"
          }
        ],
        "mapping": [
          {
            "identity": "hcim-laboratorytestresult-v4.1-2017EN",
            "map": "NL-CM:13.1.2",
            "comment": "Specimen"
          }
        ]
      },
      {
        "id": "Specimen.collection.collected[x]",
        "path": "Specimen.collection.collected[x]",
        "slicing": {
          "discriminator": [
            {
              "type": "type",
              "path": "$this"
            }
          ],
          "rules": "open"
        },
        "definition": "Time at which the material was collected.\r\n\r\nIf the material has not been collected at a single point in time but over a certain period, this period can be captured in this concept. An example is 24 hour urine."
      },
      {
        "id": "Specimen.collection.collected[x]:collectedDateTime",
        "path": "Specimen.collection.collected[x]",
        "sliceName": "collectedDateTime",
        "short": "CollectionDateTime",
        "alias": [
          "AfnameDatumTijd"
        ],
        "type": [
          {
            "code": "dateTime"
          }
        ],
        "mapping": [
          {
            "identity": "hcim-laboratorytestresultfortransfer-v1.2.2-2015EN",
            "map": "NL-CM:13.1.17",
            "comment": "DrawingDateTime"
          },
          {
            "identity": "hcim-laboratorytestresultfortransfer-v3.0-2016EN",
            "map": "NL-CM:13.1.17",
            "comment": "DrawingDateTime"
          },
          {
            "identity": "hcim-laboratorytestresult-v4.1-2017EN",
            "map": "NL-CM:13.1.17",
            "comment": "CollectionDateTime"
          }
        ]
      },
      {
        "id": "Specimen.collection.collected[x]:collectedPeriod",
        "path": "Specimen.collection.collected[x]",
        "sliceName": "collectedPeriod",
        "short": "CollectionPeriod",
        "alias": [
          "Verzamelperiode"
        ],
        "type": [
          {
            "code": "Period"
          }
        ],
        "mapping": [
          {
            "identity": "hcim-laboratorytestresult-v4.1-2017EN",
            "map": "NL-CM:13.1.24",
            "comment": "CollectionPeriod"
          },
          {
            "identity": "hcim-laboratorytestresult-v4.4-2019EN",
            "map": "NL-CM:13.1.24",
            "comment": "CollectionPeriod::TimeInterval Duration"
          }
        ]
      },
      {
        "id": "Specimen.collection.collected[x]:collectedPeriod.extension",
        "path": "Specimen.collection.collected[x].extension",
        "slicing": {
          "discriminator": [
            {
              "type": "value",
              "path": "url"
            }
          ],
          "rules": "open"
        }
      },
      {
        "id": "Specimen.collection.collected[x]:collectedPeriod.extension:period-duration",
        "path": "Specimen.collection.collected[x].extension",
        "sliceName": "period-duration",
        "max": "1",
        "type": [
          {
            "code": "Extension",
            "profile": "http://nictiz.nl/fhir/StructureDefinition/period-duration"
          }
        ]
      },
      {
        "id": "Specimen.collection.quantity",
        "path": "Specimen.collection.quantity",
        "short": "CollectedVolume",
        "definition": "Total volume of the collected material. If it is necessary to determine the absolute amount of a particular substance in the collected material, the volume thereof must be given.",
        "alias": [
          "Verzamelvolume"
        ],
        "mapping": [
          {
            "identity": "hcim-laboratorytestresult-v4.1-2017EN",
            "map": "NL-CM:13.1.23",
            "comment": "CollectedVolume"
          }
        ]
      },
      {
        "id": "Specimen.collection.method",
        "path": "Specimen.collection.method",
        "short": "CollectionMethod",
        "definition": "If relevant for the results, the method of obtaining the specimen can be entered as well.",
        "alias": [
          "Afnameprocedure"
        ],
        "binding": {
          "strength": "extensible",
          "valueSetReference": {
            "reference": "http://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.2--20171231000000",
            "display": "AfnameprocedureCodelijst"
          }
        },
        "mapping": [
          {
            "identity": "hcim-laboratorytestresultfortransfer-v1.2.2-2015EN",
            "map": "NL-CM:13.1.18",
            "comment": "DrawingProcedure"
          },
          {
            "identity": "hcim-laboratorytestresultfortransfer-v3.0-2016EN",
            "map": "NL-CM:13.1.18",
            "comment": "DrawingProcedure"
          },
          {
            "identity": "hcim-laboratorytestresult-v4.1-2017EN",
            "map": "NL-CM:13.1.18",
            "comment": "CollectionMethod"
          }
        ]
      },
      {
        "id": "Specimen.collection.bodySite",
        "path": "Specimen.collection.bodySite",
        "short": "AnatomicalLocation",
        "definition": "Anatomic location where the material is collected, e.g. elbow.",
        "alias": [
          "AnatomischeLocatie"
        ],
        "binding": {
          "strength": "extensible",
          "description": "SpecimenAnatomicalLocationCodelist",
          "valueSetReference": {
            "reference": "http://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.11--20171231000000",
            "display": "SpecimenAnatomicalLocationCodelist"
          }
        },
        "mapping": [
          {
            "identity": "hcim-laboratorytestresult-v4.1-2017EN",
            "map": "NL-CM:13.1.26",
            "comment": "AnatomicalLocation"
          }
        ]
      },
      {
        "id": "Specimen.collection.bodySite.extension",
        "path": "Specimen.collection.bodySite.extension",
        "slicing": {
          "discriminator": [
            {
              "type": "value",
              "path": "url"
            }
          ],
          "rules": "open"
        }
      },
      {
        "id": "Specimen.collection.bodySite.extension:laterality",
        "path": "Specimen.collection.bodySite.extension",
        "sliceName": "laterality",
        "short": "Laterality",
        "definition": "Laterality adds information about body side to the anatomic location, e.g. left",
        "type": [
          {
            "code": "Extension",
            "profile": "http://nictiz.nl/fhir/StructureDefinition/BodySite-Qualifier"
          }
        ],
        "mapping": [
          {
            "identity": "hcim-laboratorytestresult-v4.1-2017EN",
            "map": "NL-CM:13.1.27",
            "comment": "Laterality"
          }
        ]
      },
      {
        "id": "Specimen.collection.bodySite.extension:laterality.valueCodeableConcept:valueCodeableConcept",
        "path": "Specimen.collection.bodySite.extension.valueCodeableConcept",
        "sliceName": "valueCodeableConcept",
        "binding": {
          "strength": "extensible",
          "description": "LateralityCodelist",
          "valueSetReference": {
            "reference": "http://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.12--20171231000000",
            "display": "LateralityCodelist"
          }
        }
      },
      {
        "id": "Specimen.collection.bodySite.extension:morphology",
        "path": "Specimen.collection.bodySite.extension",
        "sliceName": "morphology",
        "short": "Morphology",
        "definition": "Morphology describes morphological abnormalities of the anatomical location where the material is taken, for example wound, ulcer.",
        "alias": [
          "Morfologie"
        ],
        "type": [
          {
            "code": "Extension",
            "profile": "http://nictiz.nl/fhir/StructureDefinition/BodySite-Morphology"
          }
        ],
        "mapping": [
          {
            "identity": "hcim-laboratorytestresult-v4.1-2017EN",
            "map": "NL-CM:13.1.28",
            "comment": "Morphology"
          }
        ]
      },
      {
        "id": "Specimen.collection.bodySite.extension:morphology.valueCodeableConcept:valueCodeableConcept",
        "path": "Specimen.collection.bodySite.extension.valueCodeableConcept",
        "sliceName": "valueCodeableConcept",
        "binding": {
          "strength": "extensible",
          "description": "MorphologyCodelist",
          "valueSetReference": {
            "reference": "http://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.13--20171231000000",
            "display": "MorfologieCodelijst"
          }
        }
      },
      {
        "id": "Specimen.container",
        "path": "Specimen.container",
        "short": "SpecimenContainer",
        "alias": [
          "Monstercontainer"
        ]
      },
      {
        "id": "Specimen.container.identifier",
        "path": "Specimen.container.identifier",
        "short": "SpecimenNumberExtension",
        "definition": "The specimen number extension is used when the collected material is distributed from the original tube or container across multiple tubes. In combination with the specimen Id the extension yield a unique identification of the tube or container",
        "alias": [
          "Monstervolgnummer"
        ],
        "mapping": [
          {
            "identity": "hcim-laboratorytestresult-v4.1-2017EN",
            "map": "NL-CM:13.1.20",
            "comment": "SpecimenNumberExtension"
          }
        ]
      },
      {
        "id": "Specimen.container.type",
        "path": "Specimen.container.type",
        "short": "ContainerType",
        "definition": "Container type describes the envelope in which the material is collected or sent. Examples include blood tubes, transport container, possibly including culture medium.",
        "alias": [
          "Containertype"
        ],
        "binding": {
          "strength": "extensible",
          "description": "ContainerTypeCodelist",
          "valueSetReference": {
            "reference": "http://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.9--20171231000000",
            "display": "ContainerTypeCodelist"
          }
        },
        "mapping": [
          {
            "identity": "hcim-laboratorytestresult-v4.1-2017EN",
            "map": "NL-CM:13.1.21",
            "comment": "ContainerType"
          }
        ]
      },
      {
        "id": "Specimen.note",
        "path": "Specimen.note",
        "short": "Comment",
        "alias": [
          "Toelichting"
        ],
        "mapping": [
          {
            "identity": "hcim-laboratorytestresultfortransfer-v1.2.2-2015EN",
            "map": "NL-CM:13.1.19",
            "comment": "Explanation"
          },
          {
            "identity": "hcim-laboratorytestresultfortransfer-v3.0-2016EN",
            "map": "NL-CM:13.1.19",
            "comment": "Explanation"
          },
          {
            "identity": "hcim-laboratorytestresult-v4.1-2017EN",
            "map": "NL-CM:13.1.19",
            "comment": "Comment"
          }
        ]
      }
    ]
  }
}