FHIR IG analytics| Package | hl7.fhir.uv.xver-r5.r4.r4 |
| Resource Type | ValueSet |
| Id | ValueSet-R5-genomicstudy-dataformat-for-R4.json |
| FHIR Version | R4 |
| Source | http://hl7.org/fhir/uv/xver-r5.r4/0.0.1-snapshot-2/ValueSet-R5-genomicstudy-dataformat-for-R4.html |
| URL | http://hl7.org/fhir/5.0/ValueSet/R5-genomicstudy-dataformat-for-R4 |
| Version | 0.0.1-snapshot-2 |
| Status | active |
| Date | 2025-09-01T22:37:02.540849+10:00 |
| Name | R5_genomicstudy_dataformat_for_R4 |
| Title | Cross-version VS for R5.GenomicStudyDataFormat for use in FHIR R4 |
| Realm | uv |
| Authority | hl7 |
| Description | This cross-version ValueSet represents concepts from http://hl7.org/fhir/ValueSet/genomicstudy-dataformat|5.0.0 for use in FHIR R4. Concepts not present here have direct `equivalent` mappings crossing all versions from R5 to R4. |
No resources found
| CodeSystem | |
| genomicstudy-dataformat | Genomic Study Data Format |
Note: links and images are rebased to the (stated) source
Generated Narrative: ValueSet R5-genomicstudy-dataformat-for-R4
This value set expansion contains 40 concepts.
| Code | System | Display |
| bam | http://hl7.org/fhir/genomicstudy-dataformat | BAM |
| bed | http://hl7.org/fhir/genomicstudy-dataformat | BED |
| bedpe | http://hl7.org/fhir/genomicstudy-dataformat | BEDPE |
| bedgraph | http://hl7.org/fhir/genomicstudy-dataformat | BedGraph |
| bigbed | http://hl7.org/fhir/genomicstudy-dataformat | bigBed |
| bigWig | http://hl7.org/fhir/genomicstudy-dataformat | bigWig |
| birdsuite-files | http://hl7.org/fhir/genomicstudy-dataformat | Birdsuite-Files |
| broadpeak | http://hl7.org/fhir/genomicstudy-dataformat | broadPeak |
| cbs | http://hl7.org/fhir/genomicstudy-dataformat | CBS |
| chemical-reactivity-probing-profiles | http://hl7.org/fhir/genomicstudy-dataformat | Chemical-Reactivity-Probing-Profiles |
| chrom-sizes | http://hl7.org/fhir/genomicstudy-dataformat | chrom-sizes |
| cn | http://hl7.org/fhir/genomicstudy-dataformat | CN |
| custom-file-formats | http://hl7.org/fhir/genomicstudy-dataformat | Custom-File-Formats |
| cytoband | http://hl7.org/fhir/genomicstudy-dataformat | Cytoband |
| fasta | http://hl7.org/fhir/genomicstudy-dataformat | FASTA |
| gct | http://hl7.org/fhir/genomicstudy-dataformat | GCT |
| cram | http://hl7.org/fhir/genomicstudy-dataformat | CRAM |
| genepred | http://hl7.org/fhir/genomicstudy-dataformat | genePred |
| gff-gtf | http://hl7.org/fhir/genomicstudy-dataformat | GFF/GTF |
| gistic | http://hl7.org/fhir/genomicstudy-dataformat | GISTIC |
| goby | http://hl7.org/fhir/genomicstudy-dataformat | Goby |
| gwas | http://hl7.org/fhir/genomicstudy-dataformat | GWAS |
| igv | http://hl7.org/fhir/genomicstudy-dataformat | IGV |
| loh | http://hl7.org/fhir/genomicstudy-dataformat | LOH |
| maf-multiple-alignment-format | http://hl7.org/fhir/genomicstudy-dataformat | MAF-Multiple Alignment Format |
| maf-mutation-annotation-format | http://hl7.org/fhir/genomicstudy-dataformat | MAF-Mutation-Annotation-Format |
| merged-bam-file | http://hl7.org/fhir/genomicstudy-dataformat | Merged BAM File |
| mut | http://hl7.org/fhir/genomicstudy-dataformat | MUT |
| narrowpeak | http://hl7.org/fhir/genomicstudy-dataformat | narrowPeak |
| psl | http://hl7.org/fhir/genomicstudy-dataformat | PSL |
| res | http://hl7.org/fhir/genomicstudy-dataformat | RES |
| rna-secondary-structure-formats | http://hl7.org/fhir/genomicstudy-dataformat | RNA-Secondary-Structure-Formats |
| sam | http://hl7.org/fhir/genomicstudy-dataformat | SAM |
| sample-info-attributes-file | http://hl7.org/fhir/genomicstudy-dataformat | Sample-Info-Attributes-file |
| seg | http://hl7.org/fhir/genomicstudy-dataformat | SEG |
| tdf | http://hl7.org/fhir/genomicstudy-dataformat | TDF |
| track-line | http://hl7.org/fhir/genomicstudy-dataformat | Track Line |
| type-line | http://hl7.org/fhir/genomicstudy-dataformat | Type Line |
| vcf | http://hl7.org/fhir/genomicstudy-dataformat | VCF |
| wig | http://hl7.org/fhir/genomicstudy-dataformat | WIG |
FHIR
FHIRsmith{
"resourceType": "ValueSet",
"id": "R5-genomicstudy-dataformat-for-R4",
"text": {
"status": "generated",
"div": "<!-- snip (see above) -->"
},
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
"valueInteger": 1
},
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode": "cg"
},
{
"extension": [
{
"url": "packageId",
"valueId": "hl7.fhir.uv.xver-r5.r4"
},
{
"url": "version",
"valueString": "0.0.1-snapshot-2"
}
],
"url": "http://hl7.org/fhir/StructureDefinition/package-source"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
"valueCode": "trial-use",
"_valueCode": {
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueCanonical": "http://hl7.org/fhir/5.0/ImplementationGuide/hl7.fhir.uv.xver-r5.r4"
}
]
}
}
],
"url": "http://hl7.org/fhir/5.0/ValueSet/R5-genomicstudy-dataformat-for-R4",
"version": "0.0.1-snapshot-2",
"name": "R5_genomicstudy_dataformat_for_R4",
"title": "Cross-version VS for R5.GenomicStudyDataFormat for use in FHIR R4",
"status": "active",
"experimental": false,
"date": "2025-09-01T22:37:02.540849+10:00",
"publisher": "Clinical Genomics",
"contact": [
{
"name": "Clinical Genomics",
"telecom": [
{
"system": "url",
"value": "http://www.hl7.org/Special/committees/clingenomics"
}
]
}
],
"description": "This cross-version ValueSet represents concepts from http://hl7.org/fhir/ValueSet/genomicstudy-dataformat|5.0.0 for use in FHIR R4. Concepts not present here have direct `equivalent` mappings crossing all versions from R5 to R4.",
"jurisdiction": [
{
"coding": [
{
"system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code": "001",
"display": "World"
}
]
}
],
"compose": {
"include": [
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"concept": [
{
"code": "bam",
"display": "BAM"
},
{
"code": "bed",
"display": "BED"
},
{
"code": "bedpe",
"display": "BEDPE"
},
{
"code": "bedgraph",
"display": "BedGraph"
},
{
"code": "bigbed",
"display": "bigBed"
},
{
"code": "bigWig",
"display": "bigWig"
},
{
"code": "birdsuite-files",
"display": "Birdsuite-Files"
},
{
"code": "broadpeak",
"display": "broadPeak"
},
{
"code": "cbs",
"display": "CBS"
},
{
"code": "chemical-reactivity-probing-profiles",
"display": "Chemical-Reactivity-Probing-Profiles"
},
{
"code": "chrom-sizes",
"display": "chrom-sizes"
},
{
"code": "cn",
"display": "CN"
},
{
"code": "custom-file-formats",
"display": "Custom-File-Formats"
},
{
"code": "cytoband",
"display": "Cytoband"
},
{
"code": "fasta",
"display": "FASTA"
},
{
"code": "gct",
"display": "GCT"
},
{
"code": "cram",
"display": "CRAM"
},
{
"code": "genepred",
"display": "genePred"
},
{
"code": "gff-gtf",
"display": "GFF/GTF"
},
{
"code": "gistic",
"display": "GISTIC"
},
{
"code": "goby",
"display": "Goby"
},
{
"code": "gwas",
"display": "GWAS"
},
{
"code": "igv",
"display": "IGV"
},
{
"code": "loh",
"display": "LOH"
},
{
"code": "maf-multiple-alignment-format",
"display": "MAF-Multiple Alignment Format"
},
{
"code": "maf-mutation-annotation-format",
"display": "MAF-Mutation-Annotation-Format"
},
{
"code": "merged-bam-file",
"display": "Merged BAM File"
},
{
"code": "mut",
"display": "MUT"
},
{
"code": "narrowpeak",
"display": "narrowPeak"
},
{
"code": "psl",
"display": "PSL"
},
{
"code": "res",
"display": "RES"
},
{
"code": "rna-secondary-structure-formats",
"display": "RNA-Secondary-Structure-Formats"
},
{
"code": "sam",
"display": "SAM"
},
{
"code": "sample-info-attributes-file",
"display": "Sample-Info-Attributes-file"
},
{
"code": "seg",
"display": "SEG"
},
{
"code": "tdf",
"display": "TDF"
},
{
"code": "track-line",
"display": "Track Line"
},
{
"code": "type-line",
"display": "Type Line"
},
{
"code": "vcf",
"display": "VCF"
},
{
"code": "wig",
"display": "WIG"
}
]
}
]
},
"expansion": {
"timestamp": "2025-09-01T22:37:02.54084+10:00",
"contains": [
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "bam",
"display": "BAM"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "bed",
"display": "BED"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "bedpe",
"display": "BEDPE"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "bedgraph",
"display": "BedGraph"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "bigbed",
"display": "bigBed"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "bigWig",
"display": "bigWig"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "birdsuite-files",
"display": "Birdsuite-Files"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "broadpeak",
"display": "broadPeak"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "cbs",
"display": "CBS"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "chemical-reactivity-probing-profiles",
"display": "Chemical-Reactivity-Probing-Profiles"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "chrom-sizes",
"display": "chrom-sizes"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "cn",
"display": "CN"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "custom-file-formats",
"display": "Custom-File-Formats"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "cytoband",
"display": "Cytoband"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "fasta",
"display": "FASTA"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "gct",
"display": "GCT"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "cram",
"display": "CRAM"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "genepred",
"display": "genePred"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "gff-gtf",
"display": "GFF/GTF"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "gistic",
"display": "GISTIC"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "goby",
"display": "Goby"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "gwas",
"display": "GWAS"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "igv",
"display": "IGV"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "loh",
"display": "LOH"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "maf-multiple-alignment-format",
"display": "MAF-Multiple Alignment Format"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "maf-mutation-annotation-format",
"display": "MAF-Mutation-Annotation-Format"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "merged-bam-file",
"display": "Merged BAM File"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "mut",
"display": "MUT"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "narrowpeak",
"display": "narrowPeak"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "psl",
"display": "PSL"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "res",
"display": "RES"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "rna-secondary-structure-formats",
"display": "RNA-Secondary-Structure-Formats"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "sam",
"display": "SAM"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "sample-info-attributes-file",
"display": "Sample-Info-Attributes-file"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "seg",
"display": "SEG"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "tdf",
"display": "TDF"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "track-line",
"display": "Track Line"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "type-line",
"display": "Type Line"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "vcf",
"display": "VCF"
},
{
"system": "http://hl7.org/fhir/genomicstudy-dataformat",
"version": "5.0.0",
"code": "wig",
"display": "WIG"
}
]
}
}