FHIR IG analytics| Package | hl7.fhir.uv.xver-r5.r4 |
| Resource Type | StructureDefinition |
| Id | StructureDefinition-ext-R5-GenomicStudy.analysis.json |
| FHIR Version | R4 |
| Source | http://hl7.org/fhir/uv/xver-r5.r4/0.1.0/StructureDefinition-ext-R5-GenomicStudy.analysis.html |
| URL | http://hl7.org/fhir/5.0/StructureDefinition/extension-GenomicStudy.analysis |
| Version | 0.1.0 |
| Status | active |
| Date | 2026-03-17T21:02:03.8104715+00:00 |
| Name | ExtensionGenomicStudy_Analysis |
| Title | R5: Genomic Analysis Event (new) |
| Realm | uv |
| Authority | hl7 |
| Description | R5: `GenomicStudy.analysis` (new:BackboneElement) |
| Purpose | This extension is part of the cross-version definitions generated to enable use of the element `GenomicStudy.analysis` as defined in FHIR R5 in FHIR R4. The source element is defined as: `GenomicStudy.analysis` 0..* `BackboneElement` Across FHIR versions, the element set has been mapped as: * R5 `GenomicStudy.analysis` 0..* `BackboneElement` Following are the generation technical comments: Element `GenomicStudy.analysis` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.analysis` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element). |
| Type | Extension |
| Kind | complex-type |
| ConceptMap | ||
| hl7.fhir.uv.xver-r5.r4#0.1.0 | R5-GenomicStudy-element-map-to-R4 | Cross-version mapping for FHIR R5 GenomicStudy to FHIR R4 Basic |
| hl7.fhir.uv.xver-r5.r3#0.1.0 | R5-GenomicStudy-element-map-to-R3 | Cross-version mapping for FHIR R5 GenomicStudy to FHIR STU3 Basic |
| hl7.fhir.uv.xver-r5.r4b#0.1.0 | R5-GenomicStudy-element-map-to-R4B | Cross-version mapping for FHIR R5 GenomicStudy to FHIR R4B Basic |
| StructureDefinition | ||
| hl7.fhir.uv.xver-r5.r4#0.1.0 | profile-GenomicStudy | Cross-version Profile for R5.GenomicStudy for use in FHIR R4 |
| StructureDefinition | ||
| hl7.fhir.uv.xver-r5.r4#0.1.0 | profile-ActivityDefinition | Cross-version Profile for R5.ActivityDefinition for use in FHIR R4 |
| hl7.fhir.uv.xver-r5.r4#0.1.0 | profile-Device | Cross-version Profile for R5.Device for use in FHIR R4 |
| hl7.fhir.uv.xver-r5.r4#0.1.0 | profile-DocumentReference-for-Media | Cross-version Profile for R5.DocumentReference for use in FHIR R4 |
| hl7.fhir.uv.xver-r5.r4#0.1.0 | profile-GenomicStudy | Cross-version Profile for R5.GenomicStudy for use in FHIR R4 |
| hl7.fhir.uv.xver-r5.r4#0.1.0 | profile-Observation | Cross-version Profile for R5.Observation for use in FHIR R4 |
| hl7.fhir.uv.xver-r5.r4#0.1.0 | profile-Organization | Cross-version Profile for R5.Organization for use in FHIR R4 |
| hl7.fhir.uv.xver-r5.r4#0.1.0 | profile-PlanDefinition | Cross-version Profile for R5.PlanDefinition for use in FHIR R4 |
| hl7.fhir.uv.xver-r5.r4#0.1.0 | profile-Practitioner | Cross-version Profile for R5.Practitioner for use in FHIR R4 |
| hl7.fhir.uv.xver-r5.r4#0.1.0 | profile-PractitionerRole | Cross-version Profile for R5.PractitionerRole for use in FHIR R4 |
| hl7.fhir.uv.xver-r5.r4#0.1.0 | profile-Procedure | Cross-version Profile for R5.Procedure for use in FHIR R4 |
| hl7.fhir.uv.xver-r5.r4#0.1.0 | profile-Resource | Cross-version Profile for R5.Resource for use in FHIR R4 |
| hl7.fhir.uv.xver-r5.r4#0.1.0 | profile-Specimen | Cross-version Profile for R5.Specimen for use in FHIR R4 |
| hl7.fhir.uv.xver-r5.r4#0.1.0 | profile-Task | Cross-version Profile for R5.Task for use in FHIR R4 |
| ValueSet | ||
| hl7.fhir.uv.xver-r5.r4#0.1.0 | R5-genomicstudy-changetype-for-R4 | Cross-version ValueSet R5.GenomicStudyChangeType for use in FHIR R4 |
| hl7.fhir.uv.xver-r5.r4#0.1.0 | R5-genomicstudy-dataformat-for-R4 | Cross-version ValueSet R5.GenomicStudyDataFormat for use in FHIR R4 |
| hl7.fhir.uv.xver-r5.r4#0.1.0 | R5-genomicstudy-methodtype-for-R4 | Cross-version ValueSet R5.GenomicStudyMethodType for use in FHIR R4 |
No extension usage examples found
Note: links and images are rebased to the (stated) source
Generated Narrative: StructureDefinition ext-R5-GenomicStudy.analysis
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
  Extension | 0..* | Extension(4.0.1) | R5: Genomic Analysis Event (new) | |
  Slices for extension | 0..* | Extension | Extension Slice: Unordered, Open by value:url | |
   extension:identifier | 0..* | Extension | R5: Identifiers for the analysis event (new) | |
  url | 1..1 | uri | "identifier" | |
  value[x] | 0..1 | Identifier | Identifiers for the analysis event | |
| extension:methodType | 0..* | Extension | R5: Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI) (new) | |
| url | 1..1 | uri | "methodType" | |
| value[x] | 0..1 | CodeableConcept | Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI) Binding: R5GenomicstudyMethodtypeForR4 (0.1.0) (example): The method type of the GenomicStudy analysis. | |
| extension:changeType | 0..* | Extension | R5: Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change) (new) | |
| url | 1..1 | uri | "changeType" | |
| value[x] | 0..1 | CodeableConcept | Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change) Binding: R5GenomicstudyChangetypeForR4 (0.1.0) (example): The change type relevant to GenomicStudy analysis. | |
| extension:genomeBuild | 0..1 | Extension | R5: Genome build that is used in this analysis (new) | |
| url | 1..1 | uri | "genomeBuild" | |
| value[x] | 0..1 | CodeableConcept | Genome build that is used in this analysis | |
| extension:instantiatesCanonical | 0..1 | Extension | R5: The defined protocol that describes the analysis (new) | |
| url | 1..1 | uri | "instantiatesCanonical" | |
 value[x] | 0..1 | canonical(Cross-version Profile for R5.PlanDefinition for use in FHIR R4(0.1.0) | PlanDefinition | Cross-version Profile for R5.ActivityDefinition for use in FHIR R4(0.1.0) | ActivityDefinition) | The defined protocol that describes the analysis | |
| extension:instantiatesUri | 0..1 | Extension | R5: The URL pointing to an externally maintained protocol that describes the analysis (new) | |
| url | 1..1 | uri | "instantiatesUri" | |
| value[x] | 0..1 | uri | The URL pointing to an externally maintained protocol that describes the analysis | |
| extension:title | 0..1 | Extension | R5: Name of the analysis event (human friendly) (new) | |
| url | 1..1 | uri | "title" | |
| value[x] | 0..1 | string | Name of the analysis event (human friendly) | |
| extension:focus | 0..* | Extension | R5: What the genomic analysis is about, when it is not about the subject of record (new) | |
| url | 1..1 | uri | "focus" | |
 value[x] | 0..1 | Reference(Cross-version Profile for R5.Resource for use in FHIR R4(0.1.0) | Resource) | What the genomic analysis is about, when it is not about the subject of record | |
| extension:specimen | 0..* | Extension | R5: The specimen used in the analysis event (new) | |
| url | 1..1 | uri | "specimen" | |
| value[x] | 0..1 | Reference(Cross-version Profile for R5.Specimen for use in FHIR R4(0.1.0) | Specimen) | The specimen used in the analysis event | |
| extension:date | 0..1 | Extension | R5: The date of the analysis event (new) | |
| url | 1..1 | uri | "date" | |
| value[x] | 0..1 | dateTime | The date of the analysis event | |
| extension:note | 0..* | Extension | R5: Any notes capture with the analysis event (new) | |
| url | 1..1 | uri | "note" | |
| value[x] | 0..1 | Annotation | Any notes capture with the analysis event | |
| extension:protocolPerformed | 0..1 | Extension | R5: The protocol that was performed for the analysis event (new) | |
| url | 1..1 | uri | "protocolPerformed" | |
| value[x] | 0..1 | Reference(Cross-version Profile for R5.Procedure for use in FHIR R4(0.1.0) | Procedure | Cross-version Profile for R5.Task for use in FHIR R4(0.1.0) | Task) | The protocol that was performed for the analysis event | |
| extension:regionsStudied | 0..* | Extension | R5: The genomic regions to be studied in the analysis (BED file) (new) | |
| url | 1..1 | uri | "regionsStudied" | |
| value[x] | 0..1 | Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media | Cross-version Profile for R5.Observation for use in FHIR R4(0.1.0) | Observation) | The genomic regions to be studied in the analysis (BED file) | |
| extension:regionsCalled | 0..* | Extension | R5: Genomic regions actually called in the analysis event (BED file) (new) | |
| url | 1..1 | uri | "regionsCalled" | |
| value[x] | 0..1 | Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media | Cross-version Profile for R5.Observation for use in FHIR R4(0.1.0) | Observation) | Genomic regions actually called in the analysis event (BED file) | |
| extension:input | 0..* | Extension | R5: Inputs for the analysis event (new) | |
| Slices for extension | 0..* | Extension | Extension Slice: Unordered, Open by value:url | |
 extension:file | 0..1 | Extension | R5: File containing input data (new) | |
| url | 1..1 | uri | "file" | |
| value[x] | 0..1 | Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media) | File containing input data | |
| extension:type | 0..1 | Extension | R5: Type of input data (e.g., BAM, CRAM, or FASTA) (new) | |
| url | 1..1 | uri | "type" | |
| value[x] | 0..1 | CodeableConcept | Type of input data (e.g., BAM, CRAM, or FASTA) Binding: R5GenomicstudyDataformatForR4 (0.1.0) (example): The data format of the data file. | |
 extension:generatedBy | 0..1 | Extension | R5: The analysis event or other GenomicStudy that generated this input file (new) | |
 url | 1..1 | uri | "generatedBy" | |
 value[x] | 0..1 | The analysis event or other GenomicStudy that generated this input file | ||
| valueIdentifier | Identifier | |||
 valueReference | Reference(Cross-version Profile for R5.GenomicStudy for use in FHIR R4(0.1.0) | Basic) | |||
| url | 1..1 | uri | "input" | |
| value[x] | 0..0 | Value of extension | ||
| extension:output | 0..* | Extension | R5: Outputs for the analysis event (new) | |
| Slices for extension | 0..* | Extension | Extension Slice: Unordered, Open by value:url | |
| extension:file | 0..1 | Extension | R5: File containing output data (new) | |
| url | 1..1 | uri | "file" | |
| value[x] | 0..1 | Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media) | File containing output data | |
| extension:type | 0..1 | Extension | R5: Type of output data (e.g., VCF, MAF, or BAM) (new) | |
| url | 1..1 | uri | "type" | |
| value[x] | 0..1 | CodeableConcept | Type of output data (e.g., VCF, MAF, or BAM) Binding: R5GenomicstudyDataformatForR4 (0.1.0) (example): The data format of the data file. | |
| url | 1..1 | uri | "output" | |
| value[x] | 0..0 | Value of extension | ||
| extension:performer | 0..* | Extension | R5: Performer for the analysis event (new) | |
| Slices for extension | 0..* | Extension | Extension Slice: Unordered, Open by value:url | |
| extension:actor | 0..1 | Extension | R5: The organization, healthcare professional, or others who participated in performing this analysis (new) | |
| url | 1..1 | uri | "actor" | |
| value[x] | 0..1 | Reference(Cross-version Profile for R5.Practitioner for use in FHIR R4(0.1.0) | Practitioner | Cross-version Profile for R5.PractitionerRole for use in FHIR R4(0.1.0) | PractitionerRole | Cross-version Profile for R5.Organization for use in FHIR R4(0.1.0) | Organization | Cross-version Profile for R5.Device for use in FHIR R4(0.1.0) | Device) | The organization, healthcare professional, or others who participated in performing this analysis | |
| extension:role | 0..1 | Extension | R5: Role of the actor for this analysis (new) | |
| url | 1..1 | uri | "role" | |
| value[x] | 0..1 | CodeableConcept | Role of the actor for this analysis | |
| url | 1..1 | uri | "performer" | |
| value[x] | 0..0 | Value of extension | ||
| extension:device | 0..* | Extension | R5: Devices used for the analysis (e.g., instruments, software), with settings and parameters (new) | |
| Slices for extension | 0..* | Extension | Extension Slice: Unordered, Open by value:url | |
| extension:device | 0..1 | Extension | R5: Device used for the analysis (new) | |
| url | 1..1 | uri | "device" | |
| value[x] | 0..1 | Reference(Cross-version Profile for R5.Device for use in FHIR R4(0.1.0) | Device) | Device used for the analysis | |
| extension:function | 0..1 | Extension | R5: Specific function for the device used for the analysis (new) | |
| url | 1..1 | uri | "function" | |
| value[x] | 0..1 | CodeableConcept | Specific function for the device used for the analysis | |
| url | 1..1 | uri | "device" | |
| value[x] | 0..0 | Value of extension | ||
| url | 1..1 | uri | "http://hl7.org/fhir/5.0/StructureDefinition/extension-GenomicStudy.analysis" | |
| value[x] | 0..0 | Value of extension | ||
| Documentation for this format | ||||
FHIR
FHIRsmith{
"resourceType": "StructureDefinition",
"id": "ext-R5-GenomicStudy.analysis",
"text": {
"status": "extensions",
"div": "<!-- snip (see above) -->"
},
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode": "fhir"
},
{
"extension": [
{
"url": "packageId",
"valueId": "hl7.fhir.uv.xver-r5.r4"
},
{
"url": "version",
"valueString": "0.1.0"
},
{
"url": "uri",
"valueUri": "http://hl7.org/fhir/uv/xver/ImplementationGuide/hl7.fhir.uv.xver-r5.r4"
}
],
"url": "http://hl7.org/fhir/StructureDefinition/package-source"
},
{
"extension": [
{
"url": "startFhirVersion",
"valueCode": "4.0"
},
{
"url": "endFhirVersion",
"valueCode": "4.0"
}
],
"url": "http://hl7.org/fhir/StructureDefinition/version-specific-use"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
"valueInteger": 0,
"_valueInteger": {
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueCanonical": "http://hl7.org/fhir/uv/xver/ImplementationGuide/hl7.fhir.uv.xver-r5.r4"
}
]
}
},
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
"valueCode": "trial-use",
"_valueCode": {
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueCanonical": "http://hl7.org/fhir/uv/xver/ImplementationGuide/hl7.fhir.uv.xver-r5.r4"
}
]
}
}
],
"url": "http://hl7.org/fhir/5.0/StructureDefinition/extension-GenomicStudy.analysis",
"version": "0.1.0",
"name": "ExtensionGenomicStudy_Analysis",
"title": "R5: Genomic Analysis Event (new)",
"status": "active",
"experimental": false,
"date": "2026-03-17T21:02:03.8104715+00:00",
"publisher": "FHIR Infrastructure",
"contact": [
{
"name": "FHIR Infrastructure",
"telecom": [
{
"system": "url",
"value": "http://www.hl7.org/Special/committees/fiwg"
}
]
}
],
"description": "R5: `GenomicStudy.analysis` (new:BackboneElement)",
"jurisdiction": [
{
"coding": [
{
"system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code": "001",
"display": "World"
}
]
}
],
"purpose": "This extension is part of the cross-version definitions generated to enable use of the\r\nelement `GenomicStudy.analysis` as defined in FHIR R5\r\nin FHIR R4.\r\n\r\nThe source element is defined as:\r\n`GenomicStudy.analysis` 0..* `BackboneElement`\r\n\r\nAcross FHIR versions, the element set has been mapped as:\r\n* R5 `GenomicStudy.analysis` 0..* `BackboneElement`\r\n\r\nFollowing are the generation technical comments:\r\nElement `GenomicStudy.analysis` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"fhirVersion": "4.0.1",
"mapping": [
{
"identity": "rim",
"uri": "http://hl7.org/v3",
"name": "RIM Mapping"
}
],
"kind": "complex-type",
"abstract": false,
"context": [
{
"type": "element",
"expression": "Basic"
}
],
"type": "Extension",
"baseDefinition": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1",
"derivation": "constraint",
"snapshot": {
"extension": [
{
"url": "http://hl7.org/fhir/tools/StructureDefinition/snapshot-base-version",
"valueString": "4.0.1"
}
],
"element": [
{
"id": "Extension",
"path": "Extension",
"short": "R5: Genomic Analysis Event (new)",
"definition": "R5: `GenomicStudy.analysis` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension",
"min": 0,
"max": "*"
},
"condition": [
"ele-1"
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), 'value')])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false
},
{
"id": "Extension.id",
"path": "Extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension",
"path": "Extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"ordered": false,
"rules": "open"
},
"short": "Extension",
"definition": "An Extension",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:identifier",
"path": "Extension.extension",
"sliceName": "identifier",
"short": "R5: Identifiers for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.identifier` (new:Identifier)",
"comment": "Element `GenomicStudy.analysis.identifier` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.identifier` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.identifier` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.identifier` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.identifier` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.identifier` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:identifier.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:identifier.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:identifier.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "identifier",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:identifier.value[x]",
"path": "Extension.extension.value[x]",
"short": "Identifiers for the analysis event",
"definition": "Identifiers for the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Identifier"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:methodType",
"path": "Extension.extension",
"sliceName": "methodType",
"short": "R5: Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI) (new)",
"definition": "R5: `GenomicStudy.analysis.methodType` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.methodType` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.methodType` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.methodType` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.methodType` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.methodType` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.methodType` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:methodType.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:methodType.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:methodType.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "methodType",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:methodType.value[x]",
"path": "Extension.extension.value[x]",
"short": "Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI)",
"definition": "Type of the methods used in the analysis, e.g., Fluorescence in situ hybridization (FISH), Karyotyping, or Microsatellite instability testing (MSI).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"binding": {
"strength": "example",
"description": "The method type of the GenomicStudy analysis.",
"valueSet": "http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-methodtype-for-R4|0.1.0"
},
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:changeType",
"path": "Extension.extension",
"sliceName": "changeType",
"short": "R5: Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change) (new)",
"definition": "R5: `GenomicStudy.analysis.changeType` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.changeType` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.changeType` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.changeType` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.changeType` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.changeType` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.changeType` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:changeType.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:changeType.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:changeType.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "changeType",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:changeType.value[x]",
"path": "Extension.extension.value[x]",
"short": "Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change)",
"definition": "Type of the genomic changes studied in the analysis, e.g., DNA, RNA, or amino acid change.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"binding": {
"strength": "example",
"description": "The change type relevant to GenomicStudy analysis.",
"valueSet": "http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-changetype-for-R4|0.1.0"
},
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:genomeBuild",
"path": "Extension.extension",
"sliceName": "genomeBuild",
"short": "R5: Genome build that is used in this analysis (new)",
"definition": "R5: `GenomicStudy.analysis.genomeBuild` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.genomeBuild` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.genomeBuild` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.genomeBuild` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.genomeBuild` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.genomeBuild` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.genomeBuild` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:genomeBuild.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:genomeBuild.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:genomeBuild.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "genomeBuild",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:genomeBuild.value[x]",
"path": "Extension.extension.value[x]",
"short": "Genome build that is used in this analysis",
"definition": "The reference genome build that is used in this analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:instantiatesCanonical",
"path": "Extension.extension",
"sliceName": "instantiatesCanonical",
"short": "R5: The defined protocol that describes the analysis (new)",
"definition": "R5: `GenomicStudy.analysis.instantiatesCanonical` (new:canonical(PlanDefinition,ActivityDefinition))",
"comment": "Element `GenomicStudy.analysis.instantiatesCanonical` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.instantiatesCanonical` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.instantiatesCanonical` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.instantiatesCanonical` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.instantiatesCanonical` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.instantiatesCanonical` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:instantiatesCanonical.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:instantiatesCanonical.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:instantiatesCanonical.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "instantiatesCanonical",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:instantiatesCanonical.value[x]",
"path": "Extension.extension.value[x]",
"short": "The defined protocol that describes the analysis",
"definition": "The defined protocol that describes the analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "canonical",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-PlanDefinition|0.1.0",
"http://hl7.org/fhir/StructureDefinition/PlanDefinition|4.0.1",
"http://hl7.org/fhir/5.0/StructureDefinition/profile-ActivityDefinition|0.1.0",
"http://hl7.org/fhir/StructureDefinition/ActivityDefinition|4.0.1"
]
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:instantiatesUri",
"path": "Extension.extension",
"sliceName": "instantiatesUri",
"short": "R5: The URL pointing to an externally maintained protocol that describes the analysis (new)",
"definition": "R5: `GenomicStudy.analysis.instantiatesUri` (new:uri)",
"comment": "Element `GenomicStudy.analysis.instantiatesUri` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.instantiatesUri` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.instantiatesUri` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.instantiatesUri` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.instantiatesUri` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.instantiatesUri` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:instantiatesUri.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:instantiatesUri.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:instantiatesUri.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "instantiatesUri",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:instantiatesUri.value[x]",
"path": "Extension.extension.value[x]",
"short": "The URL pointing to an externally maintained protocol that describes the analysis",
"definition": "The URL pointing to an externally maintained protocol that describes the analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:title",
"path": "Extension.extension",
"sliceName": "title",
"short": "R5: Name of the analysis event (human friendly) (new)",
"definition": "R5: `GenomicStudy.analysis.title` (new:string)",
"comment": "Element `GenomicStudy.analysis.title` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.title` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.title` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.title` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.title` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.title` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:title.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:title.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:title.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "title",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:title.value[x]",
"path": "Extension.extension.value[x]",
"short": "Name of the analysis event (human friendly)",
"definition": "Name of the analysis event (human friendly).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:focus",
"path": "Extension.extension",
"sliceName": "focus",
"short": "R5: What the genomic analysis is about, when it is not about the subject of record (new)",
"definition": "R5: `GenomicStudy.analysis.focus` (new:Reference(Resource))",
"comment": "Element `GenomicStudy.analysis.focus` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.focus` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.focus` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).\nIf the focus of the analysis is not known, the value of this field SHALL use the data absent extension.",
"requirements": "Element `GenomicStudy.analysis.focus` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.focus` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.focus` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:focus.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:focus.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:focus.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "focus",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:focus.value[x]",
"path": "Extension.extension.value[x]",
"short": "What the genomic analysis is about, when it is not about the subject of record",
"definition": "The focus of a genomic analysis when it is not the patient of record representing something or someone associated with the patient such as a spouse, parent, child, or sibling. For example, in trio testing, the GenomicStudy.subject would be the child (proband) and the GenomicStudy.analysis.focus of a specific analysis would be the parent.",
"comment": "If the focus of the analysis is not known, the value of this field SHALL use the data absent extension.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Resource|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Resource|4.0.1"
]
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:specimen",
"path": "Extension.extension",
"sliceName": "specimen",
"short": "R5: The specimen used in the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.specimen` (new:Reference(Specimen))",
"comment": "Element `GenomicStudy.analysis.specimen` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.specimen` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.specimen` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.specimen` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.specimen` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.specimen` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:specimen.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:specimen.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:specimen.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "specimen",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:specimen.value[x]",
"path": "Extension.extension.value[x]",
"short": "The specimen used in the analysis event",
"definition": "The specimen used in the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Specimen|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Specimen|4.0.1"
]
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:date",
"path": "Extension.extension",
"sliceName": "date",
"short": "R5: The date of the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.date` (new:dateTime)",
"comment": "Element `GenomicStudy.analysis.date` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.date` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.date` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.date` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.date` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.date` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:date.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:date.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:date.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "date",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:date.value[x]",
"path": "Extension.extension.value[x]",
"short": "The date of the analysis event",
"definition": "The date of the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "dateTime"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:note",
"path": "Extension.extension",
"sliceName": "note",
"short": "R5: Any notes capture with the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.note` (new:Annotation)",
"comment": "Element `GenomicStudy.analysis.note` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.note` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.note` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.note` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.note` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.note` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:note.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:note.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:note.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "note",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:note.value[x]",
"path": "Extension.extension.value[x]",
"short": "Any notes capture with the analysis event",
"definition": "Any notes capture with the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Annotation"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:protocolPerformed",
"path": "Extension.extension",
"sliceName": "protocolPerformed",
"short": "R5: The protocol that was performed for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.protocolPerformed` (new:Reference(Procedure,Task))",
"comment": "Element `GenomicStudy.analysis.protocolPerformed` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.protocolPerformed` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.protocolPerformed` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.protocolPerformed` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.protocolPerformed` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.protocolPerformed` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:protocolPerformed.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:protocolPerformed.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:protocolPerformed.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "protocolPerformed",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:protocolPerformed.value[x]",
"path": "Extension.extension.value[x]",
"short": "The protocol that was performed for the analysis event",
"definition": "The protocol that was performed for the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Procedure|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Procedure|4.0.1",
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Task|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Task|4.0.1"
]
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:regionsStudied",
"path": "Extension.extension",
"sliceName": "regionsStudied",
"short": "R5: The genomic regions to be studied in the analysis (BED file) (new)",
"definition": "R5: `GenomicStudy.analysis.regionsStudied` (new:Reference(DocumentReference,Observation))",
"comment": "Element `GenomicStudy.analysis.regionsStudied` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.regionsStudied` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.regionsStudied` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.regionsStudied` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.regionsStudied` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.regionsStudied` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:regionsStudied.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:regionsStudied.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:regionsStudied.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "regionsStudied",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:regionsStudied.value[x]",
"path": "Extension.extension.value[x]",
"short": "The genomic regions to be studied in the analysis (BED file)",
"definition": "The genomic regions to be studied in the analysis (BED file).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-DocumentReference-for-Media|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Media|4.0.1",
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Observation|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Observation|4.0.1"
]
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:regionsCalled",
"path": "Extension.extension",
"sliceName": "regionsCalled",
"short": "R5: Genomic regions actually called in the analysis event (BED file) (new)",
"definition": "R5: `GenomicStudy.analysis.regionsCalled` (new:Reference(DocumentReference,Observation))",
"comment": "Element `GenomicStudy.analysis.regionsCalled` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.regionsCalled` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.regionsCalled` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.regionsCalled` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.regionsCalled` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.regionsCalled` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:regionsCalled.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:regionsCalled.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:regionsCalled.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "regionsCalled",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:regionsCalled.value[x]",
"path": "Extension.extension.value[x]",
"short": "Genomic regions actually called in the analysis event (BED file)",
"definition": "Genomic regions actually called in the analysis event (BED file).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-DocumentReference-for-Media|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Media|4.0.1",
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Observation|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Observation|4.0.1"
]
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:input",
"path": "Extension.extension",
"sliceName": "input",
"short": "R5: Inputs for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.input` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis.input` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.input` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.input` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.input` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:input.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:input.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"ordered": false,
"rules": "open"
},
"short": "Extension",
"definition": "An Extension",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:input.extension:file",
"path": "Extension.extension.extension",
"sliceName": "file",
"short": "R5: File containing input data (new)",
"definition": "R5: `GenomicStudy.analysis.input.file` (new:Reference(DocumentReference))",
"comment": "Element `GenomicStudy.analysis.input.file` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.file` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.file` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.input.file` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.file` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.file` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:input.extension:file.id",
"path": "Extension.extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:input.extension:file.extension",
"path": "Extension.extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:input.extension:file.url",
"path": "Extension.extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "file",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:input.extension:file.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "File containing input data",
"definition": "File containing input data.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-DocumentReference-for-Media|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Media|4.0.1"
]
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:input.extension:type",
"path": "Extension.extension.extension",
"sliceName": "type",
"short": "R5: Type of input data (e.g., BAM, CRAM, or FASTA) (new)",
"definition": "R5: `GenomicStudy.analysis.input.type` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.input.type` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.type` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.type` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.input.type` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.type` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.type` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:input.extension:type.id",
"path": "Extension.extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:input.extension:type.extension",
"path": "Extension.extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:input.extension:type.url",
"path": "Extension.extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "type",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:input.extension:type.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Type of input data (e.g., BAM, CRAM, or FASTA)",
"definition": "Type of input data, e.g., BAM, CRAM, or FASTA.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"binding": {
"strength": "example",
"description": "The data format of the data file.",
"valueSet": "http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-dataformat-for-R4|0.1.0"
},
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:input.extension:generatedBy",
"path": "Extension.extension.extension",
"sliceName": "generatedBy",
"short": "R5: The analysis event or other GenomicStudy that generated this input file (new)",
"definition": "R5: `GenomicStudy.analysis.input.generatedBy[x]` (new:Identifier, Reference(GenomicStudy))",
"comment": "Element `GenomicStudy.analysis.input.generatedBy[x]` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.generatedBy[x]` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.generatedBy[x]` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.input.generatedBy[x]` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.generatedBy[x]` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.generatedBy[x]` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:input.extension:generatedBy.id",
"path": "Extension.extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:input.extension:generatedBy.extension",
"path": "Extension.extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:input.extension:generatedBy.url",
"path": "Extension.extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "generatedBy",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:input.extension:generatedBy.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "The analysis event or other GenomicStudy that generated this input file",
"definition": "The analysis event or other GenomicStudy that generated this input file.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Identifier"
},
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-GenomicStudy|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Basic|4.0.1"
]
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:input.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "input",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:input.value[x]",
"path": "Extension.extension.value[x]",
"short": "Value of extension",
"definition": "Value of extension - must be one of a constrained set of the data types (see [Extensibility](http://hl7.org/fhir/R4/extensibility.html) for a list).",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "base64Binary"
},
{
"code": "boolean"
},
{
"code": "canonical"
},
{
"code": "code"
},
{
"code": "date"
},
{
"code": "dateTime"
},
{
"code": "decimal"
},
{
"code": "id"
},
{
"code": "instant"
},
{
"code": "integer"
},
{
"code": "markdown"
},
{
"code": "oid"
},
{
"code": "positiveInt"
},
{
"code": "string"
},
{
"code": "time"
},
{
"code": "unsignedInt"
},
{
"code": "uri"
},
{
"code": "url"
},
{
"code": "uuid"
},
{
"code": "Address"
},
{
"code": "Age"
},
{
"code": "Annotation"
},
{
"code": "Attachment"
},
{
"code": "CodeableConcept"
},
{
"code": "Coding"
},
{
"code": "ContactPoint"
},
{
"code": "Count"
},
{
"code": "Distance"
},
{
"code": "Duration"
},
{
"code": "HumanName"
},
{
"code": "Identifier"
},
{
"code": "Money"
},
{
"code": "Period"
},
{
"code": "Quantity"
},
{
"code": "Range"
},
{
"code": "Ratio"
},
{
"code": "Reference"
},
{
"code": "SampledData"
},
{
"code": "Signature"
},
{
"code": "Timing"
},
{
"code": "ContactDetail"
},
{
"code": "Contributor"
},
{
"code": "DataRequirement"
},
{
"code": "Expression"
},
{
"code": "ParameterDefinition"
},
{
"code": "RelatedArtifact"
},
{
"code": "TriggerDefinition"
},
{
"code": "UsageContext"
},
{
"code": "Dosage"
},
{
"code": "Meta"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:output",
"path": "Extension.extension",
"sliceName": "output",
"short": "R5: Outputs for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.output` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis.output` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.output` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.output` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.output` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:output.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:output.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"ordered": false,
"rules": "open"
},
"short": "Extension",
"definition": "An Extension",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:output.extension:file",
"path": "Extension.extension.extension",
"sliceName": "file",
"short": "R5: File containing output data (new)",
"definition": "R5: `GenomicStudy.analysis.output.file` (new:Reference(DocumentReference))",
"comment": "Element `GenomicStudy.analysis.output.file` is part of an existing definition because parent element `GenomicStudy.analysis.output` requires a cross-version extension.\nElement `GenomicStudy.analysis.output.file` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output.file` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.output.file` is part of an existing definition because parent element `GenomicStudy.analysis.output` requires a cross-version extension.\nElement `GenomicStudy.analysis.output.file` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output.file` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:output.extension:file.id",
"path": "Extension.extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:output.extension:file.extension",
"path": "Extension.extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:output.extension:file.url",
"path": "Extension.extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "file",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:output.extension:file.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "File containing output data",
"definition": "File containing output data.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-DocumentReference-for-Media|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Media|4.0.1"
]
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:output.extension:type",
"path": "Extension.extension.extension",
"sliceName": "type",
"short": "R5: Type of output data (e.g., VCF, MAF, or BAM) (new)",
"definition": "R5: `GenomicStudy.analysis.output.type` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.output.type` is part of an existing definition because parent element `GenomicStudy.analysis.output` requires a cross-version extension.\nElement `GenomicStudy.analysis.output.type` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output.type` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.output.type` is part of an existing definition because parent element `GenomicStudy.analysis.output` requires a cross-version extension.\nElement `GenomicStudy.analysis.output.type` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output.type` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:output.extension:type.id",
"path": "Extension.extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:output.extension:type.extension",
"path": "Extension.extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:output.extension:type.url",
"path": "Extension.extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "type",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:output.extension:type.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Type of output data (e.g., VCF, MAF, or BAM)",
"definition": "Type of output data, e.g., VCF, MAF, or BAM.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"binding": {
"strength": "example",
"description": "The data format of the data file.",
"valueSet": "http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-dataformat-for-R4|0.1.0"
},
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:output.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "output",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:output.value[x]",
"path": "Extension.extension.value[x]",
"short": "Value of extension",
"definition": "Value of extension - must be one of a constrained set of the data types (see [Extensibility](http://hl7.org/fhir/R4/extensibility.html) for a list).",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "base64Binary"
},
{
"code": "boolean"
},
{
"code": "canonical"
},
{
"code": "code"
},
{
"code": "date"
},
{
"code": "dateTime"
},
{
"code": "decimal"
},
{
"code": "id"
},
{
"code": "instant"
},
{
"code": "integer"
},
{
"code": "markdown"
},
{
"code": "oid"
},
{
"code": "positiveInt"
},
{
"code": "string"
},
{
"code": "time"
},
{
"code": "unsignedInt"
},
{
"code": "uri"
},
{
"code": "url"
},
{
"code": "uuid"
},
{
"code": "Address"
},
{
"code": "Age"
},
{
"code": "Annotation"
},
{
"code": "Attachment"
},
{
"code": "CodeableConcept"
},
{
"code": "Coding"
},
{
"code": "ContactPoint"
},
{
"code": "Count"
},
{
"code": "Distance"
},
{
"code": "Duration"
},
{
"code": "HumanName"
},
{
"code": "Identifier"
},
{
"code": "Money"
},
{
"code": "Period"
},
{
"code": "Quantity"
},
{
"code": "Range"
},
{
"code": "Ratio"
},
{
"code": "Reference"
},
{
"code": "SampledData"
},
{
"code": "Signature"
},
{
"code": "Timing"
},
{
"code": "ContactDetail"
},
{
"code": "Contributor"
},
{
"code": "DataRequirement"
},
{
"code": "Expression"
},
{
"code": "ParameterDefinition"
},
{
"code": "RelatedArtifact"
},
{
"code": "TriggerDefinition"
},
{
"code": "UsageContext"
},
{
"code": "Dosage"
},
{
"code": "Meta"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:performer",
"path": "Extension.extension",
"sliceName": "performer",
"short": "R5: Performer for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.performer` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis.performer` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.performer` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:performer.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:performer.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"ordered": false,
"rules": "open"
},
"short": "Extension",
"definition": "An Extension",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:performer.extension:actor",
"path": "Extension.extension.extension",
"sliceName": "actor",
"short": "R5: The organization, healthcare professional, or others who participated in performing this analysis (new)",
"definition": "R5: `GenomicStudy.analysis.performer.actor` (new:Reference(Practitioner,PractitionerRole,Organization,Device))",
"comment": "Element `GenomicStudy.analysis.performer.actor` is part of an existing definition because parent element `GenomicStudy.analysis.performer` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer.actor` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer.actor` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.performer.actor` is part of an existing definition because parent element `GenomicStudy.analysis.performer` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer.actor` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer.actor` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:performer.extension:actor.id",
"path": "Extension.extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:performer.extension:actor.extension",
"path": "Extension.extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:performer.extension:actor.url",
"path": "Extension.extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "actor",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:performer.extension:actor.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "The organization, healthcare professional, or others who participated in performing this analysis",
"definition": "The organization, healthcare professional, or others who participated in performing this analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Practitioner|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Practitioner|4.0.1",
"http://hl7.org/fhir/5.0/StructureDefinition/profile-PractitionerRole|0.1.0",
"http://hl7.org/fhir/StructureDefinition/PractitionerRole|4.0.1",
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Organization|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Organization|4.0.1",
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Device|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Device|4.0.1"
]
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:performer.extension:role",
"path": "Extension.extension.extension",
"sliceName": "role",
"short": "R5: Role of the actor for this analysis (new)",
"definition": "R5: `GenomicStudy.analysis.performer.role` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.performer.role` is part of an existing definition because parent element `GenomicStudy.analysis.performer` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer.role` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer.role` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.performer.role` is part of an existing definition because parent element `GenomicStudy.analysis.performer` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer.role` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer.role` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:performer.extension:role.id",
"path": "Extension.extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:performer.extension:role.extension",
"path": "Extension.extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:performer.extension:role.url",
"path": "Extension.extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "role",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:performer.extension:role.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Role of the actor for this analysis",
"definition": "Role of the actor for this analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:performer.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "performer",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:performer.value[x]",
"path": "Extension.extension.value[x]",
"short": "Value of extension",
"definition": "Value of extension - must be one of a constrained set of the data types (see [Extensibility](http://hl7.org/fhir/R4/extensibility.html) for a list).",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "base64Binary"
},
{
"code": "boolean"
},
{
"code": "canonical"
},
{
"code": "code"
},
{
"code": "date"
},
{
"code": "dateTime"
},
{
"code": "decimal"
},
{
"code": "id"
},
{
"code": "instant"
},
{
"code": "integer"
},
{
"code": "markdown"
},
{
"code": "oid"
},
{
"code": "positiveInt"
},
{
"code": "string"
},
{
"code": "time"
},
{
"code": "unsignedInt"
},
{
"code": "uri"
},
{
"code": "url"
},
{
"code": "uuid"
},
{
"code": "Address"
},
{
"code": "Age"
},
{
"code": "Annotation"
},
{
"code": "Attachment"
},
{
"code": "CodeableConcept"
},
{
"code": "Coding"
},
{
"code": "ContactPoint"
},
{
"code": "Count"
},
{
"code": "Distance"
},
{
"code": "Duration"
},
{
"code": "HumanName"
},
{
"code": "Identifier"
},
{
"code": "Money"
},
{
"code": "Period"
},
{
"code": "Quantity"
},
{
"code": "Range"
},
{
"code": "Ratio"
},
{
"code": "Reference"
},
{
"code": "SampledData"
},
{
"code": "Signature"
},
{
"code": "Timing"
},
{
"code": "ContactDetail"
},
{
"code": "Contributor"
},
{
"code": "DataRequirement"
},
{
"code": "Expression"
},
{
"code": "ParameterDefinition"
},
{
"code": "RelatedArtifact"
},
{
"code": "TriggerDefinition"
},
{
"code": "UsageContext"
},
{
"code": "Dosage"
},
{
"code": "Meta"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:device",
"path": "Extension.extension",
"sliceName": "device",
"short": "R5: Devices used for the analysis (e.g., instruments, software), with settings and parameters (new)",
"definition": "R5: `GenomicStudy.analysis.device` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis.device` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.device` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.device` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.device` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:device.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:device.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"ordered": false,
"rules": "open"
},
"short": "Extension",
"definition": "An Extension",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:device.extension:device",
"path": "Extension.extension.extension",
"sliceName": "device",
"short": "R5: Device used for the analysis (new)",
"definition": "R5: `GenomicStudy.analysis.device.device` (new:Reference(Device))",
"comment": "Element `GenomicStudy.analysis.device.device` is part of an existing definition because parent element `GenomicStudy.analysis.device` requires a cross-version extension.\nElement `GenomicStudy.analysis.device.device` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device.device` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.device.device` is part of an existing definition because parent element `GenomicStudy.analysis.device` requires a cross-version extension.\nElement `GenomicStudy.analysis.device.device` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device.device` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:device.extension:device.id",
"path": "Extension.extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:device.extension:device.extension",
"path": "Extension.extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:device.extension:device.url",
"path": "Extension.extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "device",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:device.extension:device.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Device used for the analysis",
"definition": "Device used for the analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Device|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Device|4.0.1"
]
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:device.extension:function",
"path": "Extension.extension.extension",
"sliceName": "function",
"short": "R5: Specific function for the device used for the analysis (new)",
"definition": "R5: `GenomicStudy.analysis.device.function` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.device.function` is part of an existing definition because parent element `GenomicStudy.analysis.device` requires a cross-version extension.\nElement `GenomicStudy.analysis.device.function` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device.function` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.device.function` is part of an existing definition because parent element `GenomicStudy.analysis.device` requires a cross-version extension.\nElement `GenomicStudy.analysis.device.function` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device.function` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false
},
{
"id": "Extension.extension:device.extension:function.id",
"path": "Extension.extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:device.extension:function.extension",
"path": "Extension.extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:device.extension:function.url",
"path": "Extension.extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "function",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:device.extension:function.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Specific function for the device used for the analysis",
"definition": "Specific function for the device used for the analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:device.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "device",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:device.value[x]",
"path": "Extension.extension.value[x]",
"short": "Value of extension",
"definition": "Value of extension - must be one of a constrained set of the data types (see [Extensibility](http://hl7.org/fhir/R4/extensibility.html) for a list).",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "base64Binary"
},
{
"code": "boolean"
},
{
"code": "canonical"
},
{
"code": "code"
},
{
"code": "date"
},
{
"code": "dateTime"
},
{
"code": "decimal"
},
{
"code": "id"
},
{
"code": "instant"
},
{
"code": "integer"
},
{
"code": "markdown"
},
{
"code": "oid"
},
{
"code": "positiveInt"
},
{
"code": "string"
},
{
"code": "time"
},
{
"code": "unsignedInt"
},
{
"code": "uri"
},
{
"code": "url"
},
{
"code": "uuid"
},
{
"code": "Address"
},
{
"code": "Age"
},
{
"code": "Annotation"
},
{
"code": "Attachment"
},
{
"code": "CodeableConcept"
},
{
"code": "Coding"
},
{
"code": "ContactPoint"
},
{
"code": "Count"
},
{
"code": "Distance"
},
{
"code": "Duration"
},
{
"code": "HumanName"
},
{
"code": "Identifier"
},
{
"code": "Money"
},
{
"code": "Period"
},
{
"code": "Quantity"
},
{
"code": "Range"
},
{
"code": "Ratio"
},
{
"code": "Reference"
},
{
"code": "SampledData"
},
{
"code": "Signature"
},
{
"code": "Timing"
},
{
"code": "ContactDetail"
},
{
"code": "Contributor"
},
{
"code": "DataRequirement"
},
{
"code": "Expression"
},
{
"code": "ParameterDefinition"
},
{
"code": "RelatedArtifact"
},
{
"code": "TriggerDefinition"
},
{
"code": "UsageContext"
},
{
"code": "Dosage"
},
{
"code": "Meta"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.url",
"path": "Extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "uri"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"fixedUri": "http://hl7.org/fhir/5.0/StructureDefinition/extension-GenomicStudy.analysis",
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.value[x]",
"path": "Extension.value[x]",
"short": "Value of extension",
"definition": "Value of extension - must be one of a constrained set of the data types (see [Extensibility](http://hl7.org/fhir/R4/extensibility.html) for a list).",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "base64Binary"
},
{
"code": "boolean"
},
{
"code": "canonical"
},
{
"code": "code"
},
{
"code": "date"
},
{
"code": "dateTime"
},
{
"code": "decimal"
},
{
"code": "id"
},
{
"code": "instant"
},
{
"code": "integer"
},
{
"code": "markdown"
},
{
"code": "oid"
},
{
"code": "positiveInt"
},
{
"code": "string"
},
{
"code": "time"
},
{
"code": "unsignedInt"
},
{
"code": "uri"
},
{
"code": "url"
},
{
"code": "uuid"
},
{
"code": "Address"
},
{
"code": "Age"
},
{
"code": "Annotation"
},
{
"code": "Attachment"
},
{
"code": "CodeableConcept"
},
{
"code": "Coding"
},
{
"code": "ContactPoint"
},
{
"code": "Count"
},
{
"code": "Distance"
},
{
"code": "Duration"
},
{
"code": "HumanName"
},
{
"code": "Identifier"
},
{
"code": "Money"
},
{
"code": "Period"
},
{
"code": "Quantity"
},
{
"code": "Range"
},
{
"code": "Ratio"
},
{
"code": "Reference"
},
{
"code": "SampledData"
},
{
"code": "Signature"
},
{
"code": "Timing"
},
{
"code": "ContactDetail"
},
{
"code": "Contributor"
},
{
"code": "DataRequirement"
},
{
"code": "Expression"
},
{
"code": "ParameterDefinition"
},
{
"code": "RelatedArtifact"
},
{
"code": "TriggerDefinition"
},
{
"code": "UsageContext"
},
{
"code": "Dosage"
},
{
"code": "Meta"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element|4.0.1"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
}
]
},
"differential": {
"element": [
{
"id": "Extension",
"path": "Extension",
"short": "R5: Genomic Analysis Event (new)",
"definition": "R5: `GenomicStudy.analysis` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension",
"min": 0,
"max": "*"
},
"isModifier": false
},
{
"id": "Extension.extension",
"path": "Extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"ordered": false,
"rules": "open"
},
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:identifier",
"path": "Extension.extension",
"sliceName": "identifier",
"short": "R5: Identifiers for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.identifier` (new:Identifier)",
"comment": "Element `GenomicStudy.analysis.identifier` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.identifier` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.identifier` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.identifier` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.identifier` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.identifier` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:identifier.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "identifier"
},
{
"id": "Extension.extension:identifier.value[x]",
"path": "Extension.extension.value[x]",
"short": "Identifiers for the analysis event",
"definition": "Identifiers for the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Identifier"
}
]
},
{
"id": "Extension.extension:methodType",
"path": "Extension.extension",
"sliceName": "methodType",
"short": "R5: Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI) (new)",
"definition": "R5: `GenomicStudy.analysis.methodType` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.methodType` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.methodType` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.methodType` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.methodType` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.methodType` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.methodType` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:methodType.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "methodType"
},
{
"id": "Extension.extension:methodType.value[x]",
"path": "Extension.extension.value[x]",
"short": "Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI)",
"definition": "Type of the methods used in the analysis, e.g., Fluorescence in situ hybridization (FISH), Karyotyping, or Microsatellite instability testing (MSI).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"binding": {
"strength": "example",
"description": "The method type of the GenomicStudy analysis.",
"valueSet": "http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-methodtype-for-R4|0.1.0"
}
},
{
"id": "Extension.extension:changeType",
"path": "Extension.extension",
"sliceName": "changeType",
"short": "R5: Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change) (new)",
"definition": "R5: `GenomicStudy.analysis.changeType` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.changeType` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.changeType` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.changeType` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.changeType` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.changeType` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.changeType` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:changeType.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "changeType"
},
{
"id": "Extension.extension:changeType.value[x]",
"path": "Extension.extension.value[x]",
"short": "Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change)",
"definition": "Type of the genomic changes studied in the analysis, e.g., DNA, RNA, or amino acid change.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"binding": {
"strength": "example",
"description": "The change type relevant to GenomicStudy analysis.",
"valueSet": "http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-changetype-for-R4|0.1.0"
}
},
{
"id": "Extension.extension:genomeBuild",
"path": "Extension.extension",
"sliceName": "genomeBuild",
"short": "R5: Genome build that is used in this analysis (new)",
"definition": "R5: `GenomicStudy.analysis.genomeBuild` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.genomeBuild` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.genomeBuild` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.genomeBuild` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.genomeBuild` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.genomeBuild` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.genomeBuild` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:genomeBuild.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "genomeBuild"
},
{
"id": "Extension.extension:genomeBuild.value[x]",
"path": "Extension.extension.value[x]",
"short": "Genome build that is used in this analysis",
"definition": "The reference genome build that is used in this analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
]
},
{
"id": "Extension.extension:instantiatesCanonical",
"path": "Extension.extension",
"sliceName": "instantiatesCanonical",
"short": "R5: The defined protocol that describes the analysis (new)",
"definition": "R5: `GenomicStudy.analysis.instantiatesCanonical` (new:canonical(PlanDefinition,ActivityDefinition))",
"comment": "Element `GenomicStudy.analysis.instantiatesCanonical` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.instantiatesCanonical` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.instantiatesCanonical` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.instantiatesCanonical` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.instantiatesCanonical` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.instantiatesCanonical` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:instantiatesCanonical.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "instantiatesCanonical"
},
{
"id": "Extension.extension:instantiatesCanonical.value[x]",
"path": "Extension.extension.value[x]",
"short": "The defined protocol that describes the analysis",
"definition": "The defined protocol that describes the analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "canonical",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-PlanDefinition|0.1.0",
"http://hl7.org/fhir/StructureDefinition/PlanDefinition|4.0.1",
"http://hl7.org/fhir/5.0/StructureDefinition/profile-ActivityDefinition|0.1.0",
"http://hl7.org/fhir/StructureDefinition/ActivityDefinition|4.0.1"
]
}
]
},
{
"id": "Extension.extension:instantiatesUri",
"path": "Extension.extension",
"sliceName": "instantiatesUri",
"short": "R5: The URL pointing to an externally maintained protocol that describes the analysis (new)",
"definition": "R5: `GenomicStudy.analysis.instantiatesUri` (new:uri)",
"comment": "Element `GenomicStudy.analysis.instantiatesUri` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.instantiatesUri` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.instantiatesUri` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.instantiatesUri` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.instantiatesUri` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.instantiatesUri` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:instantiatesUri.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "instantiatesUri"
},
{
"id": "Extension.extension:instantiatesUri.value[x]",
"path": "Extension.extension.value[x]",
"short": "The URL pointing to an externally maintained protocol that describes the analysis",
"definition": "The URL pointing to an externally maintained protocol that describes the analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "uri"
}
]
},
{
"id": "Extension.extension:title",
"path": "Extension.extension",
"sliceName": "title",
"short": "R5: Name of the analysis event (human friendly) (new)",
"definition": "R5: `GenomicStudy.analysis.title` (new:string)",
"comment": "Element `GenomicStudy.analysis.title` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.title` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.title` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.title` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.title` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.title` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:title.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "title"
},
{
"id": "Extension.extension:title.value[x]",
"path": "Extension.extension.value[x]",
"short": "Name of the analysis event (human friendly)",
"definition": "Name of the analysis event (human friendly).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "Extension.extension:focus",
"path": "Extension.extension",
"sliceName": "focus",
"short": "R5: What the genomic analysis is about, when it is not about the subject of record (new)",
"definition": "R5: `GenomicStudy.analysis.focus` (new:Reference(Resource))",
"comment": "Element `GenomicStudy.analysis.focus` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.focus` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.focus` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).\nIf the focus of the analysis is not known, the value of this field SHALL use the data absent extension.",
"requirements": "Element `GenomicStudy.analysis.focus` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.focus` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.focus` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:focus.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "focus"
},
{
"id": "Extension.extension:focus.value[x]",
"path": "Extension.extension.value[x]",
"short": "What the genomic analysis is about, when it is not about the subject of record",
"definition": "The focus of a genomic analysis when it is not the patient of record representing something or someone associated with the patient such as a spouse, parent, child, or sibling. For example, in trio testing, the GenomicStudy.subject would be the child (proband) and the GenomicStudy.analysis.focus of a specific analysis would be the parent.",
"comment": "If the focus of the analysis is not known, the value of this field SHALL use the data absent extension.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Resource|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Resource|4.0.1"
]
}
]
},
{
"id": "Extension.extension:specimen",
"path": "Extension.extension",
"sliceName": "specimen",
"short": "R5: The specimen used in the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.specimen` (new:Reference(Specimen))",
"comment": "Element `GenomicStudy.analysis.specimen` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.specimen` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.specimen` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.specimen` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.specimen` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.specimen` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:specimen.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "specimen"
},
{
"id": "Extension.extension:specimen.value[x]",
"path": "Extension.extension.value[x]",
"short": "The specimen used in the analysis event",
"definition": "The specimen used in the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Specimen|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Specimen|4.0.1"
]
}
]
},
{
"id": "Extension.extension:date",
"path": "Extension.extension",
"sliceName": "date",
"short": "R5: The date of the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.date` (new:dateTime)",
"comment": "Element `GenomicStudy.analysis.date` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.date` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.date` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.date` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.date` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.date` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:date.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "date"
},
{
"id": "Extension.extension:date.value[x]",
"path": "Extension.extension.value[x]",
"short": "The date of the analysis event",
"definition": "The date of the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "dateTime"
}
]
},
{
"id": "Extension.extension:note",
"path": "Extension.extension",
"sliceName": "note",
"short": "R5: Any notes capture with the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.note` (new:Annotation)",
"comment": "Element `GenomicStudy.analysis.note` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.note` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.note` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.note` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.note` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.note` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:note.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "note"
},
{
"id": "Extension.extension:note.value[x]",
"path": "Extension.extension.value[x]",
"short": "Any notes capture with the analysis event",
"definition": "Any notes capture with the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Annotation"
}
]
},
{
"id": "Extension.extension:protocolPerformed",
"path": "Extension.extension",
"sliceName": "protocolPerformed",
"short": "R5: The protocol that was performed for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.protocolPerformed` (new:Reference(Procedure,Task))",
"comment": "Element `GenomicStudy.analysis.protocolPerformed` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.protocolPerformed` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.protocolPerformed` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.protocolPerformed` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.protocolPerformed` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.protocolPerformed` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:protocolPerformed.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "protocolPerformed"
},
{
"id": "Extension.extension:protocolPerformed.value[x]",
"path": "Extension.extension.value[x]",
"short": "The protocol that was performed for the analysis event",
"definition": "The protocol that was performed for the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Procedure|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Procedure|4.0.1",
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Task|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Task|4.0.1"
]
}
]
},
{
"id": "Extension.extension:regionsStudied",
"path": "Extension.extension",
"sliceName": "regionsStudied",
"short": "R5: The genomic regions to be studied in the analysis (BED file) (new)",
"definition": "R5: `GenomicStudy.analysis.regionsStudied` (new:Reference(DocumentReference,Observation))",
"comment": "Element `GenomicStudy.analysis.regionsStudied` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.regionsStudied` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.regionsStudied` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.regionsStudied` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.regionsStudied` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.regionsStudied` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:regionsStudied.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "regionsStudied"
},
{
"id": "Extension.extension:regionsStudied.value[x]",
"path": "Extension.extension.value[x]",
"short": "The genomic regions to be studied in the analysis (BED file)",
"definition": "The genomic regions to be studied in the analysis (BED file).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-DocumentReference-for-Media|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Media|4.0.1",
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Observation|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Observation|4.0.1"
]
}
]
},
{
"id": "Extension.extension:regionsCalled",
"path": "Extension.extension",
"sliceName": "regionsCalled",
"short": "R5: Genomic regions actually called in the analysis event (BED file) (new)",
"definition": "R5: `GenomicStudy.analysis.regionsCalled` (new:Reference(DocumentReference,Observation))",
"comment": "Element `GenomicStudy.analysis.regionsCalled` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.regionsCalled` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.regionsCalled` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.regionsCalled` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.regionsCalled` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.regionsCalled` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:regionsCalled.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "regionsCalled"
},
{
"id": "Extension.extension:regionsCalled.value[x]",
"path": "Extension.extension.value[x]",
"short": "Genomic regions actually called in the analysis event (BED file)",
"definition": "Genomic regions actually called in the analysis event (BED file).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-DocumentReference-for-Media|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Media|4.0.1",
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Observation|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Observation|4.0.1"
]
}
]
},
{
"id": "Extension.extension:input",
"path": "Extension.extension",
"sliceName": "input",
"short": "R5: Inputs for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.input` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis.input` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.input` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.input` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.input` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:input.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"ordered": false,
"rules": "open"
},
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:input.extension:file",
"path": "Extension.extension.extension",
"sliceName": "file",
"short": "R5: File containing input data (new)",
"definition": "R5: `GenomicStudy.analysis.input.file` (new:Reference(DocumentReference))",
"comment": "Element `GenomicStudy.analysis.input.file` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.file` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.file` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.input.file` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.file` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.file` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:input.extension:file.url",
"path": "Extension.extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "file"
},
{
"id": "Extension.extension:input.extension:file.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "File containing input data",
"definition": "File containing input data.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-DocumentReference-for-Media|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Media|4.0.1"
]
}
]
},
{
"id": "Extension.extension:input.extension:type",
"path": "Extension.extension.extension",
"sliceName": "type",
"short": "R5: Type of input data (e.g., BAM, CRAM, or FASTA) (new)",
"definition": "R5: `GenomicStudy.analysis.input.type` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.input.type` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.type` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.type` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.input.type` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.type` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.type` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:input.extension:type.url",
"path": "Extension.extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "type"
},
{
"id": "Extension.extension:input.extension:type.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Type of input data (e.g., BAM, CRAM, or FASTA)",
"definition": "Type of input data, e.g., BAM, CRAM, or FASTA.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"binding": {
"strength": "example",
"description": "The data format of the data file.",
"valueSet": "http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-dataformat-for-R4|0.1.0"
}
},
{
"id": "Extension.extension:input.extension:generatedBy",
"path": "Extension.extension.extension",
"sliceName": "generatedBy",
"short": "R5: The analysis event or other GenomicStudy that generated this input file (new)",
"definition": "R5: `GenomicStudy.analysis.input.generatedBy[x]` (new:Identifier, Reference(GenomicStudy))",
"comment": "Element `GenomicStudy.analysis.input.generatedBy[x]` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.generatedBy[x]` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.generatedBy[x]` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.input.generatedBy[x]` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.generatedBy[x]` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.generatedBy[x]` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:input.extension:generatedBy.url",
"path": "Extension.extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "generatedBy"
},
{
"id": "Extension.extension:input.extension:generatedBy.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "The analysis event or other GenomicStudy that generated this input file",
"definition": "The analysis event or other GenomicStudy that generated this input file.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Identifier"
},
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-GenomicStudy|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Basic|4.0.1"
]
}
]
},
{
"id": "Extension.extension:input.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "input"
},
{
"id": "Extension.extension:input.value[x]",
"path": "Extension.extension.value[x]",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
}
},
{
"id": "Extension.extension:output",
"path": "Extension.extension",
"sliceName": "output",
"short": "R5: Outputs for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.output` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis.output` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.output` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.output` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.output` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:output.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"ordered": false,
"rules": "open"
},
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:output.extension:file",
"path": "Extension.extension.extension",
"sliceName": "file",
"short": "R5: File containing output data (new)",
"definition": "R5: `GenomicStudy.analysis.output.file` (new:Reference(DocumentReference))",
"comment": "Element `GenomicStudy.analysis.output.file` is part of an existing definition because parent element `GenomicStudy.analysis.output` requires a cross-version extension.\nElement `GenomicStudy.analysis.output.file` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output.file` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.output.file` is part of an existing definition because parent element `GenomicStudy.analysis.output` requires a cross-version extension.\nElement `GenomicStudy.analysis.output.file` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output.file` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:output.extension:file.url",
"path": "Extension.extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "file"
},
{
"id": "Extension.extension:output.extension:file.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "File containing output data",
"definition": "File containing output data.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-DocumentReference-for-Media|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Media|4.0.1"
]
}
]
},
{
"id": "Extension.extension:output.extension:type",
"path": "Extension.extension.extension",
"sliceName": "type",
"short": "R5: Type of output data (e.g., VCF, MAF, or BAM) (new)",
"definition": "R5: `GenomicStudy.analysis.output.type` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.output.type` is part of an existing definition because parent element `GenomicStudy.analysis.output` requires a cross-version extension.\nElement `GenomicStudy.analysis.output.type` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output.type` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.output.type` is part of an existing definition because parent element `GenomicStudy.analysis.output` requires a cross-version extension.\nElement `GenomicStudy.analysis.output.type` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output.type` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:output.extension:type.url",
"path": "Extension.extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "type"
},
{
"id": "Extension.extension:output.extension:type.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Type of output data (e.g., VCF, MAF, or BAM)",
"definition": "Type of output data, e.g., VCF, MAF, or BAM.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"binding": {
"strength": "example",
"description": "The data format of the data file.",
"valueSet": "http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-dataformat-for-R4|0.1.0"
}
},
{
"id": "Extension.extension:output.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "output"
},
{
"id": "Extension.extension:output.value[x]",
"path": "Extension.extension.value[x]",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
}
},
{
"id": "Extension.extension:performer",
"path": "Extension.extension",
"sliceName": "performer",
"short": "R5: Performer for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.performer` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis.performer` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.performer` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:performer.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"ordered": false,
"rules": "open"
},
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:performer.extension:actor",
"path": "Extension.extension.extension",
"sliceName": "actor",
"short": "R5: The organization, healthcare professional, or others who participated in performing this analysis (new)",
"definition": "R5: `GenomicStudy.analysis.performer.actor` (new:Reference(Practitioner,PractitionerRole,Organization,Device))",
"comment": "Element `GenomicStudy.analysis.performer.actor` is part of an existing definition because parent element `GenomicStudy.analysis.performer` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer.actor` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer.actor` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.performer.actor` is part of an existing definition because parent element `GenomicStudy.analysis.performer` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer.actor` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer.actor` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:performer.extension:actor.url",
"path": "Extension.extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "actor"
},
{
"id": "Extension.extension:performer.extension:actor.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "The organization, healthcare professional, or others who participated in performing this analysis",
"definition": "The organization, healthcare professional, or others who participated in performing this analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Practitioner|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Practitioner|4.0.1",
"http://hl7.org/fhir/5.0/StructureDefinition/profile-PractitionerRole|0.1.0",
"http://hl7.org/fhir/StructureDefinition/PractitionerRole|4.0.1",
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Organization|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Organization|4.0.1",
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Device|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Device|4.0.1"
]
}
]
},
{
"id": "Extension.extension:performer.extension:role",
"path": "Extension.extension.extension",
"sliceName": "role",
"short": "R5: Role of the actor for this analysis (new)",
"definition": "R5: `GenomicStudy.analysis.performer.role` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.performer.role` is part of an existing definition because parent element `GenomicStudy.analysis.performer` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer.role` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer.role` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.performer.role` is part of an existing definition because parent element `GenomicStudy.analysis.performer` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer.role` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer.role` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:performer.extension:role.url",
"path": "Extension.extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "role"
},
{
"id": "Extension.extension:performer.extension:role.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Role of the actor for this analysis",
"definition": "Role of the actor for this analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
]
},
{
"id": "Extension.extension:performer.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "performer"
},
{
"id": "Extension.extension:performer.value[x]",
"path": "Extension.extension.value[x]",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
}
},
{
"id": "Extension.extension:device",
"path": "Extension.extension",
"sliceName": "device",
"short": "R5: Devices used for the analysis (e.g., instruments, software), with settings and parameters (new)",
"definition": "R5: `GenomicStudy.analysis.device` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis.device` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.device` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.device` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.device` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:device.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"ordered": false,
"rules": "open"
},
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:device.extension:device",
"path": "Extension.extension.extension",
"sliceName": "device",
"short": "R5: Device used for the analysis (new)",
"definition": "R5: `GenomicStudy.analysis.device.device` (new:Reference(Device))",
"comment": "Element `GenomicStudy.analysis.device.device` is part of an existing definition because parent element `GenomicStudy.analysis.device` requires a cross-version extension.\nElement `GenomicStudy.analysis.device.device` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device.device` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.device.device` is part of an existing definition because parent element `GenomicStudy.analysis.device` requires a cross-version extension.\nElement `GenomicStudy.analysis.device.device` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device.device` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:device.extension:device.url",
"path": "Extension.extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "device"
},
{
"id": "Extension.extension:device.extension:device.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Device used for the analysis",
"definition": "Device used for the analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": [
"http://hl7.org/fhir/5.0/StructureDefinition/profile-Device|0.1.0",
"http://hl7.org/fhir/StructureDefinition/Device|4.0.1"
]
}
]
},
{
"id": "Extension.extension:device.extension:function",
"path": "Extension.extension.extension",
"sliceName": "function",
"short": "R5: Specific function for the device used for the analysis (new)",
"definition": "R5: `GenomicStudy.analysis.device.function` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.device.function` is part of an existing definition because parent element `GenomicStudy.analysis.device` requires a cross-version extension.\nElement `GenomicStudy.analysis.device.function` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device.function` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.device.function` is part of an existing definition because parent element `GenomicStudy.analysis.device` requires a cross-version extension.\nElement `GenomicStudy.analysis.device.function` is not mapped to FHIR R4, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device.function` has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:device.extension:function.url",
"path": "Extension.extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "function"
},
{
"id": "Extension.extension:device.extension:function.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Specific function for the device used for the analysis",
"definition": "Specific function for the device used for the analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
]
},
{
"id": "Extension.extension:device.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "device"
},
{
"id": "Extension.extension:device.value[x]",
"path": "Extension.extension.value[x]",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
}
},
{
"id": "Extension.url",
"path": "Extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "http://hl7.org/fhir/5.0/StructureDefinition/extension-GenomicStudy.analysis"
},
{
"id": "Extension.value[x]",
"path": "Extension.value[x]",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
}
}
]
}
}