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Source1

{
  "resourceType": "ValueSet",
  "id": "R5-genomicstudy-dataformat-for-R3",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
      "valueInteger": 1
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
      "valueCode": "cg"
    },
    {
      "extension": [
        {
          "url": "packageId",
          "valueId": "hl7.fhir.uv.xver-r5.r3"
        },
        {
          "url": "version",
          "valueString": "0.1.0"
        },
        {
          "url": "uri",
          "valueUri": "http://hl7.org/fhir/uv/xver/ImplementationGuide/hl7.fhir.uv.xver-r5.r3"
        }
      ],
      "url": "http://hl7.org/fhir/StructureDefinition/package-source"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
      "valueCode": "trial-use",
      "_valueCode": {
        "extension": [
          {
            "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
            "valueUri": "http://hl7.org/fhir/uv/xver/ImplementationGuide/hl7.fhir.uv.xver-r5.r3"
          }
        ]
      }
    }
  ],
  "url": "http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-dataformat-for-R3",
  "version": "0.1.0",
  "name": "R5GenomicstudyDataformatForR3",
  "title": "Cross-version ValueSet R5.GenomicStudyDataFormat for use in FHIR STU3",
  "status": "active",
  "experimental": false,
  "date": "2026-03-17T21:02:03.8104715+00:00",
  "publisher": "Clinical Genomics",
  "contact": [
    {
      "name": "Clinical Genomics",
      "telecom": [
        {
          "system": "url",
          "value": "http://www.hl7.org/Special/committees/clingenomics"
        }
      ]
    }
  ],
  "description": "This cross-version ValueSet represents content from `http://hl7.org/fhir/ValueSet/genomicstudy-dataformat|5.0.0` for use in FHIR STU3.",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
          "code": "001",
          "display": "World"
        }
      ]
    }
  ],
  "purpose": "This value set is part of the cross-version definitions generated to enable use of the\r\nvalue set `http://hl7.org/fhir/ValueSet/genomicstudy-dataformat|5.0.0` as defined in FHIR R5\r\nin FHIR STU3.\r\n\r\nThe source value set is bound to the following FHIR R5 elements:\r\n* `GenomicStudy.analysis.input.type`\n* `GenomicStudy.analysis.output.type`\r\n\r\nNote that all concepts are included in this cross-version definition because no concepts have compatible representations\r\n\r\nFollowing are the generation technical comments:\r\n\nFHIR ValueSet `http://hl7.org/fhir/ValueSet/genomicstudy-dataformat|5.0.0`, defined in FHIR R5 does not have any mapping to FHIR STU3",
  "compose": {
    "include": [
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "concept": [
          {
            "code": "bam",
            "display": "BAM"
          },
          {
            "code": "bed",
            "display": "BED"
          },
          {
            "code": "bedgraph",
            "display": "BedGraph"
          },
          {
            "code": "bedpe",
            "display": "BEDPE"
          },
          {
            "code": "bigWig",
            "display": "bigWig"
          },
          {
            "code": "bigbed",
            "display": "bigBed"
          },
          {
            "code": "birdsuite-files",
            "display": "Birdsuite-Files"
          },
          {
            "code": "broadpeak",
            "display": "broadPeak"
          },
          {
            "code": "cbs",
            "display": "CBS"
          },
          {
            "code": "chemical-reactivity-probing-profiles",
            "display": "Chemical-Reactivity-Probing-Profiles"
          },
          {
            "code": "chrom-sizes",
            "display": "chrom-sizes"
          },
          {
            "code": "cn",
            "display": "CN"
          },
          {
            "code": "cram",
            "display": "CRAM"
          },
          {
            "code": "custom-file-formats",
            "display": "Custom-File-Formats"
          },
          {
            "code": "cytoband",
            "display": "Cytoband"
          },
          {
            "code": "fasta",
            "display": "FASTA"
          },
          {
            "code": "gct",
            "display": "GCT"
          },
          {
            "code": "genepred",
            "display": "genePred"
          },
          {
            "code": "gff-gtf",
            "display": "GFF/GTF"
          },
          {
            "code": "gistic",
            "display": "GISTIC"
          },
          {
            "code": "goby",
            "display": "Goby"
          },
          {
            "code": "gwas",
            "display": "GWAS"
          },
          {
            "code": "igv",
            "display": "IGV"
          },
          {
            "code": "loh",
            "display": "LOH"
          },
          {
            "code": "maf-multiple-alignment-format",
            "display": "MAF-Multiple Alignment Format"
          },
          {
            "code": "maf-mutation-annotation-format",
            "display": "MAF-Mutation-Annotation-Format"
          },
          {
            "code": "merged-bam-file",
            "display": "Merged BAM File"
          },
          {
            "code": "mut",
            "display": "MUT"
          },
          {
            "code": "narrowpeak",
            "display": "narrowPeak"
          },
          {
            "code": "psl",
            "display": "PSL"
          },
          {
            "code": "res",
            "display": "RES"
          },
          {
            "code": "rna-secondary-structure-formats",
            "display": "RNA-Secondary-Structure-Formats"
          },
          {
            "code": "sam",
            "display": "SAM"
          },
          {
            "code": "sample-info-attributes-file",
            "display": "Sample-Info-Attributes-file"
          },
          {
            "code": "seg",
            "display": "SEG"
          },
          {
            "code": "tdf",
            "display": "TDF"
          },
          {
            "code": "track-line",
            "display": "Track Line"
          },
          {
            "code": "type-line",
            "display": "Type Line"
          },
          {
            "code": "vcf",
            "display": "VCF"
          },
          {
            "code": "wig",
            "display": "WIG"
          }
        ]
      }
    ]
  },
  "expansion": {
    "timestamp": "2026-03-17T21:02:03.8104715+00:00",
    "contains": [
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "bam",
        "display": "BAM"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "bed",
        "display": "BED"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "bedgraph",
        "display": "BedGraph"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "bedpe",
        "display": "BEDPE"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "bigWig",
        "display": "bigWig"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "bigbed",
        "display": "bigBed"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "birdsuite-files",
        "display": "Birdsuite-Files"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "broadpeak",
        "display": "broadPeak"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "cbs",
        "display": "CBS"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "chemical-reactivity-probing-profiles",
        "display": "Chemical-Reactivity-Probing-Profiles"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "chrom-sizes",
        "display": "chrom-sizes"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "cn",
        "display": "CN"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "cram",
        "display": "CRAM"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "custom-file-formats",
        "display": "Custom-File-Formats"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "cytoband",
        "display": "Cytoband"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "fasta",
        "display": "FASTA"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "gct",
        "display": "GCT"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "genepred",
        "display": "genePred"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "gff-gtf",
        "display": "GFF/GTF"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "gistic",
        "display": "GISTIC"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "goby",
        "display": "Goby"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "gwas",
        "display": "GWAS"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "igv",
        "display": "IGV"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "loh",
        "display": "LOH"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "maf-multiple-alignment-format",
        "display": "MAF-Multiple Alignment Format"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "maf-mutation-annotation-format",
        "display": "MAF-Mutation-Annotation-Format"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "merged-bam-file",
        "display": "Merged BAM File"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "mut",
        "display": "MUT"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "narrowpeak",
        "display": "narrowPeak"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "psl",
        "display": "PSL"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "res",
        "display": "RES"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "rna-secondary-structure-formats",
        "display": "RNA-Secondary-Structure-Formats"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "sam",
        "display": "SAM"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "sample-info-attributes-file",
        "display": "Sample-Info-Attributes-file"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "seg",
        "display": "SEG"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "tdf",
        "display": "TDF"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "track-line",
        "display": "Track Line"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "type-line",
        "display": "Type Line"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "vcf",
        "display": "VCF"
      },
      {
        "system": "http://hl7.org/fhir/genomicstudy-dataformat",
        "version": "5.0.0",
        "code": "wig",
        "display": "WIG"
      }
    ]
  }
}