FHIR IG analytics| Package | hl7.fhir.uv.xver-r5.r3 |
| Resource Type | StructureDefinition |
| Id | StructureDefinition-ext-R5-GenomicStudy.analysis.json |
| FHIR Version | R3 |
No resources found
No resources found
Note: links and images are rebased to the (stated) source
Generated Narrative: StructureDefinition ext-R5-GenomicStudy.analysis
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
  Extension | 0..* | Extension | R5: Genomic Analysis Event (new) | |
  Slices for extension | 0..* | Extension | Extension Slice: Unordered, Open by value:url | |
   extension:identifier | 0..* | Extension | R5: Identifiers for the analysis event (new) | |
  url | 1..1 | uri | "identifier" | |
  value[x] | 0..1 | Identifier | Identifiers for the analysis event | |
| extension:methodType | 0..* | Extension | R5: Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI) (new) | |
| url | 1..1 | uri | "methodType" | |
| value[x] | 0..1 | CodeableConcept | Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI) Binding: R5GenomicstudyMethodtypeForR3 (0.1.0) (example): The method type of the GenomicStudy analysis. | |
| extension:changeType | 0..* | Extension | R5: Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change) (new) | |
| url | 1..1 | uri | "changeType" | |
| value[x] | 0..1 | CodeableConcept | Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change) Binding: R5GenomicstudyChangetypeForR3 (0.1.0) (example): The change type relevant to GenomicStudy analysis. | |
| extension:genomeBuild | 0..1 | Extension | R5: Genome build that is used in this analysis (new) | |
| url | 1..1 | uri | "genomeBuild" | |
| value[x] | 0..1 | CodeableConcept | Genome build that is used in this analysis | |
| extension:instantiatesCanonical | 0..1 | Extension | R5: The defined protocol that describes the analysis (new) | |
| url | 1..1 | uri | "instantiatesCanonical" | |
 value[x] | 0..1 | uri | The defined protocol that describes the analysis | |
| extension:instantiatesUri | 0..1 | Extension | R5: The URL pointing to an externally maintained protocol that describes the analysis (new) | |
| url | 1..1 | uri | "instantiatesUri" | |
| value[x] | 0..1 | uri | The URL pointing to an externally maintained protocol that describes the analysis | |
| extension:title | 0..1 | Extension | R5: Name of the analysis event (human friendly) (new) | |
| url | 1..1 | uri | "title" | |
| value[x] | 0..1 | string | Name of the analysis event (human friendly) | |
| extension:focus | 0..* | Extension | R5: What the genomic analysis is about, when it is not about the subject of record (new) | |
| url | 1..1 | uri | "focus" | |
 value[x] | 0..1 | Reference(Cross-version Profile for R5.Resource for use in FHIR STU3(0.1.0) | Resource) | What the genomic analysis is about, when it is not about the subject of record | |
| extension:specimen | 0..* | Extension | R5: The specimen used in the analysis event (new) | |
| url | 1..1 | uri | "specimen" | |
| value[x] | 0..1 | Reference(Cross-version Profile for R5.Specimen for use in FHIR STU3(0.1.0) | Specimen) | The specimen used in the analysis event | |
| extension:date | 0..1 | Extension | R5: The date of the analysis event (new) | |
| url | 1..1 | uri | "date" | |
| value[x] | 0..1 | dateTime | The date of the analysis event | |
| extension:note | 0..* | Extension | R5: Any notes capture with the analysis event (new) | |
| url | 1..1 | uri | "note" | |
| value[x] | 0..1 | Annotation | Any notes capture with the analysis event | |
| extension:protocolPerformed | 0..1 | Extension | R5: The protocol that was performed for the analysis event (new) | |
| url | 1..1 | uri | "protocolPerformed" | |
| value[x] | 0..1 | Reference(Cross-version Profile for R5.Procedure for use in FHIR STU3(0.1.0) | Procedure | Cross-version Profile for R5.Task for use in FHIR STU3(0.1.0) | Task) | The protocol that was performed for the analysis event | |
| extension:regionsStudied | 0..* | Extension | R5: The genomic regions to be studied in the analysis (BED file) (new) | |
| url | 1..1 | uri | "regionsStudied" | |
| value[x] | 0..1 | Reference(Cross-version Profile for R5.DocumentReference for use in FHIR STU3(0.1.0) | Media | Cross-version Profile for R5.Observation for use in FHIR STU3(0.1.0) | Observation) | The genomic regions to be studied in the analysis (BED file) | |
| extension:regionsCalled | 0..* | Extension | R5: Genomic regions actually called in the analysis event (BED file) (new) | |
| url | 1..1 | uri | "regionsCalled" | |
| value[x] | 0..1 | Reference(Cross-version Profile for R5.DocumentReference for use in FHIR STU3(0.1.0) | Media | Cross-version Profile for R5.Observation for use in FHIR STU3(0.1.0) | Observation) | Genomic regions actually called in the analysis event (BED file) | |
| extension:input | 0..* | Extension | R5: Inputs for the analysis event (new) | |
| Slices for extension | 0..* | Extension | Extension Slice: Unordered, Open by value:url | |
 extension:file | 0..1 | Extension | R5: File containing input data (new) | |
| url | 1..1 | uri | "file" | |
| value[x] | 0..1 | Reference(Cross-version Profile for R5.DocumentReference for use in FHIR STU3(0.1.0) | Media) | File containing input data | |
| extension:type | 0..1 | Extension | R5: Type of input data (e.g., BAM, CRAM, or FASTA) (new) | |
| url | 1..1 | uri | "type" | |
| value[x] | 0..1 | CodeableConcept | Type of input data (e.g., BAM, CRAM, or FASTA) Binding: R5GenomicstudyDataformatForR3 (0.1.0) (example): The data format of the data file. | |
 extension:generatedBy | 0..1 | Extension | R5: The analysis event or other GenomicStudy that generated this input file (new) | |
 url | 1..1 | uri | "generatedBy" | |
 value[x] | 0..1 | The analysis event or other GenomicStudy that generated this input file | ||
| valueIdentifier | Identifier | |||
 valueReference | Reference(Cross-version Profile for R5.GenomicStudy for use in FHIR STU3(0.1.0) | Basic) | |||
| url | 1..1 | uri | "input" | |
| value[x] | 0..0 | Value of extension | ||
| extension:output | 0..* | Extension | R5: Outputs for the analysis event (new) | |
| Slices for extension | 0..* | Extension | Extension Slice: Unordered, Open by value:url | |
| extension:file | 0..1 | Extension | R5: File containing output data (new) | |
| url | 1..1 | uri | "file" | |
| value[x] | 0..1 | Reference(Cross-version Profile for R5.DocumentReference for use in FHIR STU3(0.1.0) | Media) | File containing output data | |
| extension:type | 0..1 | Extension | R5: Type of output data (e.g., VCF, MAF, or BAM) (new) | |
| url | 1..1 | uri | "type" | |
| value[x] | 0..1 | CodeableConcept | Type of output data (e.g., VCF, MAF, or BAM) Binding: R5GenomicstudyDataformatForR3 (0.1.0) (example): The data format of the data file. | |
| url | 1..1 | uri | "output" | |
| value[x] | 0..0 | Value of extension | ||
| extension:performer | 0..* | Extension | R5: Performer for the analysis event (new) | |
| Slices for extension | 0..* | Extension | Extension Slice: Unordered, Open by value:url | |
| extension:actor | 0..1 | Extension | R5: The organization, healthcare professional, or others who participated in performing this analysis (new) | |
| url | 1..1 | uri | "actor" | |
| value[x] | 0..1 | Reference(Cross-version Profile for R5.Practitioner for use in FHIR STU3(0.1.0) | Practitioner | Cross-version Profile for R5.PractitionerRole for use in FHIR STU3(0.1.0) | PractitionerRole | Cross-version Profile for R5.Organization for use in FHIR STU3(0.1.0) | Organization | Cross-version Profile for R5.Device for use in FHIR STU3(0.1.0) | Device) | The organization, healthcare professional, or others who participated in performing this analysis | |
| extension:role | 0..1 | Extension | R5: Role of the actor for this analysis (new) | |
| url | 1..1 | uri | "role" | |
| value[x] | 0..1 | CodeableConcept | Role of the actor for this analysis | |
| url | 1..1 | uri | "performer" | |
| value[x] | 0..0 | Value of extension | ||
| extension:device | 0..* | Extension | R5: Devices used for the analysis (e.g., instruments, software), with settings and parameters (new) | |
| Slices for extension | 0..* | Extension | Extension Slice: Unordered, Open by value:url | |
| extension:device | 0..1 | Extension | R5: Device used for the analysis (new) | |
| url | 1..1 | uri | "device" | |
| value[x] | 0..1 | Reference(Cross-version Profile for R5.Device for use in FHIR STU3(0.1.0) | Device) | Device used for the analysis | |
| extension:function | 0..1 | Extension | R5: Specific function for the device used for the analysis (new) | |
| url | 1..1 | uri | "function" | |
| value[x] | 0..1 | CodeableConcept | Specific function for the device used for the analysis | |
| url | 1..1 | uri | "device" | |
| value[x] | 0..0 | Value of extension | ||
| url | 1..1 | uri | "http://hl7.org/fhir/5.0/StructureDefinition/extension-GenomicStudy.analysis" | |
| value[x] | 0..0 | Value of extension | ||
| Documentation for this format | ||||
FHIR
FHIRsmith{
"resourceType": "StructureDefinition",
"id": "ext-R5-GenomicStudy.analysis",
"text": {
"status": "extensions",
"div": "<!-- snip (see above) -->"
},
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode": "fhir"
},
{
"extension": [
{
"url": "packageId",
"valueId": "hl7.fhir.uv.xver-r5.r3"
},
{
"url": "version",
"valueString": "0.1.0"
},
{
"url": "uri",
"valueUri": "http://hl7.org/fhir/uv/xver/ImplementationGuide/hl7.fhir.uv.xver-r5.r3"
}
],
"url": "http://hl7.org/fhir/StructureDefinition/package-source"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
"valueInteger": 0,
"_valueInteger": {
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueUri": "http://hl7.org/fhir/uv/xver/ImplementationGuide/hl7.fhir.uv.xver-r5.r3"
}
]
}
},
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
"valueCode": "trial-use",
"_valueCode": {
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueUri": "http://hl7.org/fhir/uv/xver/ImplementationGuide/hl7.fhir.uv.xver-r5.r3"
}
]
}
}
],
"url": "http://hl7.org/fhir/5.0/StructureDefinition/extension-GenomicStudy.analysis",
"version": "0.1.0",
"name": "ExtensionGenomicStudy_Analysis",
"title": "R5: Genomic Analysis Event (new)",
"status": "active",
"experimental": false,
"date": "2026-03-17T21:02:03.8104715+00:00",
"publisher": "FHIR Infrastructure",
"contact": [
{
"name": "FHIR Infrastructure",
"telecom": [
{
"system": "url",
"value": "http://www.hl7.org/Special/committees/fiwg"
}
]
}
],
"description": "R5: `GenomicStudy.analysis` (new:BackboneElement)",
"jurisdiction": [
{
"coding": [
{
"system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code": "001",
"display": "World"
}
]
}
],
"purpose": "This extension is part of the cross-version definitions generated to enable use of the\r\nelement `GenomicStudy.analysis` as defined in FHIR R5\r\nin FHIR STU3.\r\n\r\nThe source element is defined as:\r\n`GenomicStudy.analysis` 0..* `BackboneElement`\r\n\r\nAcross FHIR versions, the element set has been mapped as:\r\n* R5 `GenomicStudy.analysis` 0..* `BackboneElement`\r\n\r\nFollowing are the generation technical comments:\r\nElement `GenomicStudy.analysis` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"fhirVersion": "3.0.2",
"mapping": [
{
"identity": "rim",
"uri": "http://hl7.org/v3",
"name": "RIM Mapping"
}
],
"kind": "complex-type",
"abstract": false,
"contextType": "resource",
"context": [
"Basic"
],
"type": "Extension",
"baseDefinition": "http://hl7.org/fhir/StructureDefinition/Extension",
"derivation": "constraint",
"snapshot": {
"element": [
{
"id": "Extension",
"path": "Extension",
"short": "R5: Genomic Analysis Event (new)",
"definition": "R5: `GenomicStudy.analysis` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension",
"min": 0,
"max": "*"
},
"condition": [
"ele-1"
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() | (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), 'value')])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false
},
{
"id": "Extension.id",
"path": "Extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension",
"path": "Extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"ordered": false,
"rules": "open"
},
"short": "Extension",
"definition": "An Extension",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:identifier",
"path": "Extension.extension",
"sliceName": "identifier",
"short": "R5: Identifiers for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.identifier` (new:Identifier)",
"comment": "Element `GenomicStudy.analysis.identifier` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.identifier` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.identifier` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.identifier` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.identifier` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.identifier` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:identifier.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:identifier.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:identifier.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "identifier",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:identifier.value[x]",
"path": "Extension.extension.value[x]",
"short": "Identifiers for the analysis event",
"definition": "Identifiers for the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Identifier"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:methodType",
"path": "Extension.extension",
"sliceName": "methodType",
"short": "R5: Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI) (new)",
"definition": "R5: `GenomicStudy.analysis.methodType` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.methodType` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.methodType` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.methodType` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.methodType` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.methodType` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.methodType` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:methodType.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:methodType.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:methodType.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "methodType",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:methodType.value[x]",
"path": "Extension.extension.value[x]",
"short": "Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI)",
"definition": "Type of the methods used in the analysis, e.g., Fluorescence in situ hybridization (FISH), Karyotyping, or Microsatellite instability testing (MSI).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"binding": {
"strength": "example",
"description": "The method type of the GenomicStudy analysis.",
"valueSetUri": "http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-methodtype-for-R3|0.1.0"
},
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:changeType",
"path": "Extension.extension",
"sliceName": "changeType",
"short": "R5: Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change) (new)",
"definition": "R5: `GenomicStudy.analysis.changeType` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.changeType` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.changeType` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.changeType` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.changeType` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.changeType` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.changeType` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:changeType.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:changeType.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:changeType.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "changeType",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:changeType.value[x]",
"path": "Extension.extension.value[x]",
"short": "Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change)",
"definition": "Type of the genomic changes studied in the analysis, e.g., DNA, RNA, or amino acid change.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"binding": {
"strength": "example",
"description": "The change type relevant to GenomicStudy analysis.",
"valueSetUri": "http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-changetype-for-R3|0.1.0"
},
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:genomeBuild",
"path": "Extension.extension",
"sliceName": "genomeBuild",
"short": "R5: Genome build that is used in this analysis (new)",
"definition": "R5: `GenomicStudy.analysis.genomeBuild` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.genomeBuild` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.genomeBuild` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.genomeBuild` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.genomeBuild` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.genomeBuild` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.genomeBuild` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:genomeBuild.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:genomeBuild.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:genomeBuild.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "genomeBuild",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:genomeBuild.value[x]",
"path": "Extension.extension.value[x]",
"short": "Genome build that is used in this analysis",
"definition": "The reference genome build that is used in this analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:instantiatesCanonical",
"path": "Extension.extension",
"sliceName": "instantiatesCanonical",
"short": "R5: The defined protocol that describes the analysis (new)",
"definition": "R5: `GenomicStudy.analysis.instantiatesCanonical` (new:canonical(PlanDefinition,ActivityDefinition))",
"comment": "Element `GenomicStudy.analysis.instantiatesCanonical` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.instantiatesCanonical` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.instantiatesCanonical` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.instantiatesCanonical` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.instantiatesCanonical` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.instantiatesCanonical` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:instantiatesCanonical.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:instantiatesCanonical.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:instantiatesCanonical.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "instantiatesCanonical",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:instantiatesCanonical.value[x]",
"path": "Extension.extension.value[x]",
"short": "The defined protocol that describes the analysis",
"definition": "The defined protocol that describes the analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:instantiatesUri",
"path": "Extension.extension",
"sliceName": "instantiatesUri",
"short": "R5: The URL pointing to an externally maintained protocol that describes the analysis (new)",
"definition": "R5: `GenomicStudy.analysis.instantiatesUri` (new:uri)",
"comment": "Element `GenomicStudy.analysis.instantiatesUri` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.instantiatesUri` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.instantiatesUri` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.instantiatesUri` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.instantiatesUri` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.instantiatesUri` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:instantiatesUri.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:instantiatesUri.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:instantiatesUri.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "instantiatesUri",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:instantiatesUri.value[x]",
"path": "Extension.extension.value[x]",
"short": "The URL pointing to an externally maintained protocol that describes the analysis",
"definition": "The URL pointing to an externally maintained protocol that describes the analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:title",
"path": "Extension.extension",
"sliceName": "title",
"short": "R5: Name of the analysis event (human friendly) (new)",
"definition": "R5: `GenomicStudy.analysis.title` (new:string)",
"comment": "Element `GenomicStudy.analysis.title` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.title` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.title` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.title` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.title` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.title` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:title.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:title.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:title.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "title",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:title.value[x]",
"path": "Extension.extension.value[x]",
"short": "Name of the analysis event (human friendly)",
"definition": "Name of the analysis event (human friendly).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:focus",
"path": "Extension.extension",
"sliceName": "focus",
"short": "R5: What the genomic analysis is about, when it is not about the subject of record (new)",
"definition": "R5: `GenomicStudy.analysis.focus` (new:Reference(Resource))",
"comment": "Element `GenomicStudy.analysis.focus` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.focus` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.focus` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).\nIf the focus of the analysis is not known, the value of this field SHALL use the data absent extension.",
"requirements": "Element `GenomicStudy.analysis.focus` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.focus` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.focus` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:focus.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:focus.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:focus.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "focus",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:focus.value[x]",
"path": "Extension.extension.value[x]",
"short": "What the genomic analysis is about, when it is not about the subject of record",
"definition": "The focus of a genomic analysis when it is not the patient of record representing something or someone associated with the patient such as a spouse, parent, child, or sibling. For example, in trio testing, the GenomicStudy.subject would be the child (proband) and the GenomicStudy.analysis.focus of a specific analysis would be the parent.",
"comment": "If the focus of the analysis is not known, the value of this field SHALL use the data absent extension.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Resource|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Resource"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:specimen",
"path": "Extension.extension",
"sliceName": "specimen",
"short": "R5: The specimen used in the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.specimen` (new:Reference(Specimen))",
"comment": "Element `GenomicStudy.analysis.specimen` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.specimen` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.specimen` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.specimen` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.specimen` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.specimen` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:specimen.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:specimen.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:specimen.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "specimen",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:specimen.value[x]",
"path": "Extension.extension.value[x]",
"short": "The specimen used in the analysis event",
"definition": "The specimen used in the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Specimen|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Specimen"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:date",
"path": "Extension.extension",
"sliceName": "date",
"short": "R5: The date of the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.date` (new:dateTime)",
"comment": "Element `GenomicStudy.analysis.date` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.date` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.date` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.date` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.date` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.date` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:date.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:date.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:date.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "date",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:date.value[x]",
"path": "Extension.extension.value[x]",
"short": "The date of the analysis event",
"definition": "The date of the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "dateTime"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:note",
"path": "Extension.extension",
"sliceName": "note",
"short": "R5: Any notes capture with the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.note` (new:Annotation)",
"comment": "Element `GenomicStudy.analysis.note` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.note` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.note` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.note` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.note` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.note` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:note.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:note.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:note.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "note",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:note.value[x]",
"path": "Extension.extension.value[x]",
"short": "Any notes capture with the analysis event",
"definition": "Any notes capture with the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Annotation"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:protocolPerformed",
"path": "Extension.extension",
"sliceName": "protocolPerformed",
"short": "R5: The protocol that was performed for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.protocolPerformed` (new:Reference(Procedure,Task))",
"comment": "Element `GenomicStudy.analysis.protocolPerformed` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.protocolPerformed` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.protocolPerformed` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.protocolPerformed` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.protocolPerformed` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.protocolPerformed` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:protocolPerformed.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:protocolPerformed.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:protocolPerformed.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "protocolPerformed",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:protocolPerformed.value[x]",
"path": "Extension.extension.value[x]",
"short": "The protocol that was performed for the analysis event",
"definition": "The protocol that was performed for the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Procedure|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Procedure"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Task|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Task"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:regionsStudied",
"path": "Extension.extension",
"sliceName": "regionsStudied",
"short": "R5: The genomic regions to be studied in the analysis (BED file) (new)",
"definition": "R5: `GenomicStudy.analysis.regionsStudied` (new:Reference(DocumentReference,Observation))",
"comment": "Element `GenomicStudy.analysis.regionsStudied` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.regionsStudied` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.regionsStudied` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.regionsStudied` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.regionsStudied` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.regionsStudied` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:regionsStudied.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:regionsStudied.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:regionsStudied.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "regionsStudied",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:regionsStudied.value[x]",
"path": "Extension.extension.value[x]",
"short": "The genomic regions to be studied in the analysis (BED file)",
"definition": "The genomic regions to be studied in the analysis (BED file).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-DocumentReference-for-Media|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Media"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Observation|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Observation"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:regionsCalled",
"path": "Extension.extension",
"sliceName": "regionsCalled",
"short": "R5: Genomic regions actually called in the analysis event (BED file) (new)",
"definition": "R5: `GenomicStudy.analysis.regionsCalled` (new:Reference(DocumentReference,Observation))",
"comment": "Element `GenomicStudy.analysis.regionsCalled` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.regionsCalled` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.regionsCalled` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.regionsCalled` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.regionsCalled` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.regionsCalled` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:regionsCalled.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:regionsCalled.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:regionsCalled.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "regionsCalled",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:regionsCalled.value[x]",
"path": "Extension.extension.value[x]",
"short": "Genomic regions actually called in the analysis event (BED file)",
"definition": "Genomic regions actually called in the analysis event (BED file).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-DocumentReference-for-Media|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Media"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Observation|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Observation"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:input",
"path": "Extension.extension",
"sliceName": "input",
"short": "R5: Inputs for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.input` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis.input` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.input` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.input` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.input` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:input.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:input.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"ordered": false,
"rules": "open"
},
"short": "Extension",
"definition": "An Extension",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:input.extension:file",
"path": "Extension.extension.extension",
"sliceName": "file",
"short": "R5: File containing input data (new)",
"definition": "R5: `GenomicStudy.analysis.input.file` (new:Reference(DocumentReference))",
"comment": "Element `GenomicStudy.analysis.input.file` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.file` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.file` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.input.file` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.file` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.file` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:input.extension:file.id",
"path": "Extension.extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:input.extension:file.extension",
"path": "Extension.extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:input.extension:file.url",
"path": "Extension.extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "file",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:input.extension:file.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "File containing input data",
"definition": "File containing input data.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-DocumentReference-for-Media|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Media"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:input.extension:type",
"path": "Extension.extension.extension",
"sliceName": "type",
"short": "R5: Type of input data (e.g., BAM, CRAM, or FASTA) (new)",
"definition": "R5: `GenomicStudy.analysis.input.type` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.input.type` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.type` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.type` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.input.type` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.type` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.type` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:input.extension:type.id",
"path": "Extension.extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:input.extension:type.extension",
"path": "Extension.extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:input.extension:type.url",
"path": "Extension.extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "type",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:input.extension:type.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Type of input data (e.g., BAM, CRAM, or FASTA)",
"definition": "Type of input data, e.g., BAM, CRAM, or FASTA.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"binding": {
"strength": "example",
"description": "The data format of the data file.",
"valueSetUri": "http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-dataformat-for-R3|0.1.0"
},
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:input.extension:generatedBy",
"path": "Extension.extension.extension",
"sliceName": "generatedBy",
"short": "R5: The analysis event or other GenomicStudy that generated this input file (new)",
"definition": "R5: `GenomicStudy.analysis.input.generatedBy[x]` (new:Identifier, Reference(GenomicStudy))",
"comment": "Element `GenomicStudy.analysis.input.generatedBy[x]` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.generatedBy[x]` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.generatedBy[x]` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.input.generatedBy[x]` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.generatedBy[x]` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.generatedBy[x]` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:input.extension:generatedBy.id",
"path": "Extension.extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:input.extension:generatedBy.extension",
"path": "Extension.extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:input.extension:generatedBy.url",
"path": "Extension.extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "generatedBy",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:input.extension:generatedBy.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "The analysis event or other GenomicStudy that generated this input file",
"definition": "The analysis event or other GenomicStudy that generated this input file.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Identifier"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-GenomicStudy|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Basic"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:input.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "input",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:input.value[x]",
"path": "Extension.extension.value[x]",
"short": "Value of extension",
"definition": "Value of extension - may be a resource or one of a constrained set of the data types (see Extensibility in the spec for list).",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "base64Binary"
},
{
"code": "boolean"
},
{
"code": "code"
},
{
"code": "date"
},
{
"code": "dateTime"
},
{
"code": "decimal"
},
{
"code": "id"
},
{
"code": "instant"
},
{
"code": "integer"
},
{
"code": "markdown"
},
{
"code": "oid"
},
{
"code": "positiveInt"
},
{
"code": "string"
},
{
"code": "time"
},
{
"code": "unsignedInt"
},
{
"code": "uri"
},
{
"code": "Address"
},
{
"code": "Age"
},
{
"code": "Annotation"
},
{
"code": "Attachment"
},
{
"code": "CodeableConcept"
},
{
"code": "Coding"
},
{
"code": "ContactPoint"
},
{
"code": "Count"
},
{
"code": "Distance"
},
{
"code": "Duration"
},
{
"code": "HumanName"
},
{
"code": "Identifier"
},
{
"code": "Money"
},
{
"code": "Period"
},
{
"code": "Quantity"
},
{
"code": "Range"
},
{
"code": "Ratio"
},
{
"code": "Reference"
},
{
"code": "SampledData"
},
{
"code": "Signature"
},
{
"code": "Timing"
},
{
"code": "Meta"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:output",
"path": "Extension.extension",
"sliceName": "output",
"short": "R5: Outputs for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.output` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis.output` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.output` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.output` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.output` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:output.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:output.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"ordered": false,
"rules": "open"
},
"short": "Extension",
"definition": "An Extension",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:output.extension:file",
"path": "Extension.extension.extension",
"sliceName": "file",
"short": "R5: File containing output data (new)",
"definition": "R5: `GenomicStudy.analysis.output.file` (new:Reference(DocumentReference))",
"comment": "Element `GenomicStudy.analysis.output.file` is part of an existing definition because parent element `GenomicStudy.analysis.output` requires a cross-version extension.\nElement `GenomicStudy.analysis.output.file` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output.file` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.output.file` is part of an existing definition because parent element `GenomicStudy.analysis.output` requires a cross-version extension.\nElement `GenomicStudy.analysis.output.file` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output.file` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:output.extension:file.id",
"path": "Extension.extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:output.extension:file.extension",
"path": "Extension.extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:output.extension:file.url",
"path": "Extension.extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "file",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:output.extension:file.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "File containing output data",
"definition": "File containing output data.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-DocumentReference-for-Media|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Media"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:output.extension:type",
"path": "Extension.extension.extension",
"sliceName": "type",
"short": "R5: Type of output data (e.g., VCF, MAF, or BAM) (new)",
"definition": "R5: `GenomicStudy.analysis.output.type` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.output.type` is part of an existing definition because parent element `GenomicStudy.analysis.output` requires a cross-version extension.\nElement `GenomicStudy.analysis.output.type` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output.type` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.output.type` is part of an existing definition because parent element `GenomicStudy.analysis.output` requires a cross-version extension.\nElement `GenomicStudy.analysis.output.type` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output.type` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:output.extension:type.id",
"path": "Extension.extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:output.extension:type.extension",
"path": "Extension.extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:output.extension:type.url",
"path": "Extension.extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "type",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:output.extension:type.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Type of output data (e.g., VCF, MAF, or BAM)",
"definition": "Type of output data, e.g., VCF, MAF, or BAM.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"binding": {
"strength": "example",
"description": "The data format of the data file.",
"valueSetUri": "http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-dataformat-for-R3|0.1.0"
},
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:output.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "output",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:output.value[x]",
"path": "Extension.extension.value[x]",
"short": "Value of extension",
"definition": "Value of extension - may be a resource or one of a constrained set of the data types (see Extensibility in the spec for list).",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "base64Binary"
},
{
"code": "boolean"
},
{
"code": "code"
},
{
"code": "date"
},
{
"code": "dateTime"
},
{
"code": "decimal"
},
{
"code": "id"
},
{
"code": "instant"
},
{
"code": "integer"
},
{
"code": "markdown"
},
{
"code": "oid"
},
{
"code": "positiveInt"
},
{
"code": "string"
},
{
"code": "time"
},
{
"code": "unsignedInt"
},
{
"code": "uri"
},
{
"code": "Address"
},
{
"code": "Age"
},
{
"code": "Annotation"
},
{
"code": "Attachment"
},
{
"code": "CodeableConcept"
},
{
"code": "Coding"
},
{
"code": "ContactPoint"
},
{
"code": "Count"
},
{
"code": "Distance"
},
{
"code": "Duration"
},
{
"code": "HumanName"
},
{
"code": "Identifier"
},
{
"code": "Money"
},
{
"code": "Period"
},
{
"code": "Quantity"
},
{
"code": "Range"
},
{
"code": "Ratio"
},
{
"code": "Reference"
},
{
"code": "SampledData"
},
{
"code": "Signature"
},
{
"code": "Timing"
},
{
"code": "Meta"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:performer",
"path": "Extension.extension",
"sliceName": "performer",
"short": "R5: Performer for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.performer` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis.performer` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.performer` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:performer.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:performer.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"ordered": false,
"rules": "open"
},
"short": "Extension",
"definition": "An Extension",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:performer.extension:actor",
"path": "Extension.extension.extension",
"sliceName": "actor",
"short": "R5: The organization, healthcare professional, or others who participated in performing this analysis (new)",
"definition": "R5: `GenomicStudy.analysis.performer.actor` (new:Reference(Practitioner,PractitionerRole,Organization,Device))",
"comment": "Element `GenomicStudy.analysis.performer.actor` is part of an existing definition because parent element `GenomicStudy.analysis.performer` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer.actor` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer.actor` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.performer.actor` is part of an existing definition because parent element `GenomicStudy.analysis.performer` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer.actor` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer.actor` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:performer.extension:actor.id",
"path": "Extension.extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:performer.extension:actor.extension",
"path": "Extension.extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:performer.extension:actor.url",
"path": "Extension.extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "actor",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:performer.extension:actor.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "The organization, healthcare professional, or others who participated in performing this analysis",
"definition": "The organization, healthcare professional, or others who participated in performing this analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Practitioner|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Practitioner"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-PractitionerRole|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/PractitionerRole"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Organization|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Organization"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Device|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Device"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:performer.extension:role",
"path": "Extension.extension.extension",
"sliceName": "role",
"short": "R5: Role of the actor for this analysis (new)",
"definition": "R5: `GenomicStudy.analysis.performer.role` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.performer.role` is part of an existing definition because parent element `GenomicStudy.analysis.performer` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer.role` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer.role` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.performer.role` is part of an existing definition because parent element `GenomicStudy.analysis.performer` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer.role` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer.role` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:performer.extension:role.id",
"path": "Extension.extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:performer.extension:role.extension",
"path": "Extension.extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:performer.extension:role.url",
"path": "Extension.extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "role",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:performer.extension:role.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Role of the actor for this analysis",
"definition": "Role of the actor for this analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:performer.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "performer",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:performer.value[x]",
"path": "Extension.extension.value[x]",
"short": "Value of extension",
"definition": "Value of extension - may be a resource or one of a constrained set of the data types (see Extensibility in the spec for list).",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "base64Binary"
},
{
"code": "boolean"
},
{
"code": "code"
},
{
"code": "date"
},
{
"code": "dateTime"
},
{
"code": "decimal"
},
{
"code": "id"
},
{
"code": "instant"
},
{
"code": "integer"
},
{
"code": "markdown"
},
{
"code": "oid"
},
{
"code": "positiveInt"
},
{
"code": "string"
},
{
"code": "time"
},
{
"code": "unsignedInt"
},
{
"code": "uri"
},
{
"code": "Address"
},
{
"code": "Age"
},
{
"code": "Annotation"
},
{
"code": "Attachment"
},
{
"code": "CodeableConcept"
},
{
"code": "Coding"
},
{
"code": "ContactPoint"
},
{
"code": "Count"
},
{
"code": "Distance"
},
{
"code": "Duration"
},
{
"code": "HumanName"
},
{
"code": "Identifier"
},
{
"code": "Money"
},
{
"code": "Period"
},
{
"code": "Quantity"
},
{
"code": "Range"
},
{
"code": "Ratio"
},
{
"code": "Reference"
},
{
"code": "SampledData"
},
{
"code": "Signature"
},
{
"code": "Timing"
},
{
"code": "Meta"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:device",
"path": "Extension.extension",
"sliceName": "device",
"short": "R5: Devices used for the analysis (e.g., instruments, software), with settings and parameters (new)",
"definition": "R5: `GenomicStudy.analysis.device` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis.device` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.device` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.device` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.device` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:device.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:device.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"ordered": false,
"rules": "open"
},
"short": "Extension",
"definition": "An Extension",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:device.extension:device",
"path": "Extension.extension.extension",
"sliceName": "device",
"short": "R5: Device used for the analysis (new)",
"definition": "R5: `GenomicStudy.analysis.device.device` (new:Reference(Device))",
"comment": "Element `GenomicStudy.analysis.device.device` is part of an existing definition because parent element `GenomicStudy.analysis.device` requires a cross-version extension.\nElement `GenomicStudy.analysis.device.device` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device.device` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.device.device` is part of an existing definition because parent element `GenomicStudy.analysis.device` requires a cross-version extension.\nElement `GenomicStudy.analysis.device.device` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device.device` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:device.extension:device.id",
"path": "Extension.extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:device.extension:device.extension",
"path": "Extension.extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:device.extension:device.url",
"path": "Extension.extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "device",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:device.extension:device.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Device used for the analysis",
"definition": "Device used for the analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Device|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Device"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:device.extension:function",
"path": "Extension.extension.extension",
"sliceName": "function",
"short": "R5: Specific function for the device used for the analysis (new)",
"definition": "R5: `GenomicStudy.analysis.device.function` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.device.function` is part of an existing definition because parent element `GenomicStudy.analysis.device` requires a cross-version extension.\nElement `GenomicStudy.analysis.device.function` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device.function` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.device.function` is part of an existing definition because parent element `GenomicStudy.analysis.device` requires a cross-version extension.\nElement `GenomicStudy.analysis.device.function` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device.function` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:device.extension:function.id",
"path": "Extension.extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:device.extension:function.extension",
"path": "Extension.extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:device.extension:function.url",
"path": "Extension.extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "function",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:device.extension:function.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Specific function for the device used for the analysis",
"definition": "Specific function for the device used for the analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:device.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "device",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:device.value[x]",
"path": "Extension.extension.value[x]",
"short": "Value of extension",
"definition": "Value of extension - may be a resource or one of a constrained set of the data types (see Extensibility in the spec for list).",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "base64Binary"
},
{
"code": "boolean"
},
{
"code": "code"
},
{
"code": "date"
},
{
"code": "dateTime"
},
{
"code": "decimal"
},
{
"code": "id"
},
{
"code": "instant"
},
{
"code": "integer"
},
{
"code": "markdown"
},
{
"code": "oid"
},
{
"code": "positiveInt"
},
{
"code": "string"
},
{
"code": "time"
},
{
"code": "unsignedInt"
},
{
"code": "uri"
},
{
"code": "Address"
},
{
"code": "Age"
},
{
"code": "Annotation"
},
{
"code": "Attachment"
},
{
"code": "CodeableConcept"
},
{
"code": "Coding"
},
{
"code": "ContactPoint"
},
{
"code": "Count"
},
{
"code": "Distance"
},
{
"code": "Duration"
},
{
"code": "HumanName"
},
{
"code": "Identifier"
},
{
"code": "Money"
},
{
"code": "Period"
},
{
"code": "Quantity"
},
{
"code": "Range"
},
{
"code": "Ratio"
},
{
"code": "Reference"
},
{
"code": "SampledData"
},
{
"code": "Signature"
},
{
"code": "Timing"
},
{
"code": "Meta"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.url",
"path": "Extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "http://hl7.org/fhir/5.0/StructureDefinition/extension-GenomicStudy.analysis",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.value[x]",
"path": "Extension.value[x]",
"short": "Value of extension",
"definition": "Value of extension - may be a resource or one of a constrained set of the data types (see Extensibility in the spec for list).",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "base64Binary"
},
{
"code": "boolean"
},
{
"code": "code"
},
{
"code": "date"
},
{
"code": "dateTime"
},
{
"code": "decimal"
},
{
"code": "id"
},
{
"code": "instant"
},
{
"code": "integer"
},
{
"code": "markdown"
},
{
"code": "oid"
},
{
"code": "positiveInt"
},
{
"code": "string"
},
{
"code": "time"
},
{
"code": "unsignedInt"
},
{
"code": "uri"
},
{
"code": "Address"
},
{
"code": "Age"
},
{
"code": "Annotation"
},
{
"code": "Attachment"
},
{
"code": "CodeableConcept"
},
{
"code": "Coding"
},
{
"code": "ContactPoint"
},
{
"code": "Count"
},
{
"code": "Distance"
},
{
"code": "Duration"
},
{
"code": "HumanName"
},
{
"code": "Identifier"
},
{
"code": "Money"
},
{
"code": "Period"
},
{
"code": "Quantity"
},
{
"code": "Range"
},
{
"code": "Ratio"
},
{
"code": "Reference"
},
{
"code": "SampledData"
},
{
"code": "Signature"
},
{
"code": "Timing"
},
{
"code": "Meta"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
}
]
},
"differential": {
"element": [
{
"id": "Extension",
"path": "Extension",
"short": "R5: Genomic Analysis Event (new)",
"definition": "R5: `GenomicStudy.analysis` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension",
"min": 0,
"max": "*"
},
"isModifier": false
},
{
"id": "Extension.extension",
"path": "Extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"ordered": false,
"rules": "open"
},
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:identifier",
"path": "Extension.extension",
"sliceName": "identifier",
"short": "R5: Identifiers for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.identifier` (new:Identifier)",
"comment": "Element `GenomicStudy.analysis.identifier` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.identifier` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.identifier` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.identifier` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.identifier` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.identifier` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:identifier.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "identifier"
},
{
"id": "Extension.extension:identifier.value[x]",
"path": "Extension.extension.value[x]",
"short": "Identifiers for the analysis event",
"definition": "Identifiers for the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Identifier"
}
]
},
{
"id": "Extension.extension:methodType",
"path": "Extension.extension",
"sliceName": "methodType",
"short": "R5: Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI) (new)",
"definition": "R5: `GenomicStudy.analysis.methodType` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.methodType` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.methodType` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.methodType` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.methodType` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.methodType` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.methodType` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:methodType.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "methodType"
},
{
"id": "Extension.extension:methodType.value[x]",
"path": "Extension.extension.value[x]",
"short": "Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI)",
"definition": "Type of the methods used in the analysis, e.g., Fluorescence in situ hybridization (FISH), Karyotyping, or Microsatellite instability testing (MSI).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"binding": {
"strength": "example",
"description": "The method type of the GenomicStudy analysis.",
"valueSetUri": "http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-methodtype-for-R3|0.1.0"
}
},
{
"id": "Extension.extension:changeType",
"path": "Extension.extension",
"sliceName": "changeType",
"short": "R5: Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change) (new)",
"definition": "R5: `GenomicStudy.analysis.changeType` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.changeType` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.changeType` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.changeType` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.changeType` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.changeType` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.changeType` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:changeType.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "changeType"
},
{
"id": "Extension.extension:changeType.value[x]",
"path": "Extension.extension.value[x]",
"short": "Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change)",
"definition": "Type of the genomic changes studied in the analysis, e.g., DNA, RNA, or amino acid change.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"binding": {
"strength": "example",
"description": "The change type relevant to GenomicStudy analysis.",
"valueSetUri": "http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-changetype-for-R3|0.1.0"
}
},
{
"id": "Extension.extension:genomeBuild",
"path": "Extension.extension",
"sliceName": "genomeBuild",
"short": "R5: Genome build that is used in this analysis (new)",
"definition": "R5: `GenomicStudy.analysis.genomeBuild` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.genomeBuild` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.genomeBuild` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.genomeBuild` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.genomeBuild` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.genomeBuild` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.genomeBuild` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:genomeBuild.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "genomeBuild"
},
{
"id": "Extension.extension:genomeBuild.value[x]",
"path": "Extension.extension.value[x]",
"short": "Genome build that is used in this analysis",
"definition": "The reference genome build that is used in this analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
]
},
{
"id": "Extension.extension:instantiatesCanonical",
"path": "Extension.extension",
"sliceName": "instantiatesCanonical",
"short": "R5: The defined protocol that describes the analysis (new)",
"definition": "R5: `GenomicStudy.analysis.instantiatesCanonical` (new:canonical(PlanDefinition,ActivityDefinition))",
"comment": "Element `GenomicStudy.analysis.instantiatesCanonical` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.instantiatesCanonical` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.instantiatesCanonical` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.instantiatesCanonical` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.instantiatesCanonical` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.instantiatesCanonical` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:instantiatesCanonical.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "instantiatesCanonical"
},
{
"id": "Extension.extension:instantiatesCanonical.value[x]",
"path": "Extension.extension.value[x]",
"short": "The defined protocol that describes the analysis",
"definition": "The defined protocol that describes the analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "uri"
}
]
},
{
"id": "Extension.extension:instantiatesUri",
"path": "Extension.extension",
"sliceName": "instantiatesUri",
"short": "R5: The URL pointing to an externally maintained protocol that describes the analysis (new)",
"definition": "R5: `GenomicStudy.analysis.instantiatesUri` (new:uri)",
"comment": "Element `GenomicStudy.analysis.instantiatesUri` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.instantiatesUri` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.instantiatesUri` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.instantiatesUri` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.instantiatesUri` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.instantiatesUri` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:instantiatesUri.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "instantiatesUri"
},
{
"id": "Extension.extension:instantiatesUri.value[x]",
"path": "Extension.extension.value[x]",
"short": "The URL pointing to an externally maintained protocol that describes the analysis",
"definition": "The URL pointing to an externally maintained protocol that describes the analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "uri"
}
]
},
{
"id": "Extension.extension:title",
"path": "Extension.extension",
"sliceName": "title",
"short": "R5: Name of the analysis event (human friendly) (new)",
"definition": "R5: `GenomicStudy.analysis.title` (new:string)",
"comment": "Element `GenomicStudy.analysis.title` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.title` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.title` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.title` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.title` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.title` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:title.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "title"
},
{
"id": "Extension.extension:title.value[x]",
"path": "Extension.extension.value[x]",
"short": "Name of the analysis event (human friendly)",
"definition": "Name of the analysis event (human friendly).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "Extension.extension:focus",
"path": "Extension.extension",
"sliceName": "focus",
"short": "R5: What the genomic analysis is about, when it is not about the subject of record (new)",
"definition": "R5: `GenomicStudy.analysis.focus` (new:Reference(Resource))",
"comment": "Element `GenomicStudy.analysis.focus` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.focus` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.focus` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).\nIf the focus of the analysis is not known, the value of this field SHALL use the data absent extension.",
"requirements": "Element `GenomicStudy.analysis.focus` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.focus` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.focus` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:focus.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "focus"
},
{
"id": "Extension.extension:focus.value[x]",
"path": "Extension.extension.value[x]",
"short": "What the genomic analysis is about, when it is not about the subject of record",
"definition": "The focus of a genomic analysis when it is not the patient of record representing something or someone associated with the patient such as a spouse, parent, child, or sibling. For example, in trio testing, the GenomicStudy.subject would be the child (proband) and the GenomicStudy.analysis.focus of a specific analysis would be the parent.",
"comment": "If the focus of the analysis is not known, the value of this field SHALL use the data absent extension.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Resource|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Resource"
}
]
},
{
"id": "Extension.extension:specimen",
"path": "Extension.extension",
"sliceName": "specimen",
"short": "R5: The specimen used in the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.specimen` (new:Reference(Specimen))",
"comment": "Element `GenomicStudy.analysis.specimen` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.specimen` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.specimen` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.specimen` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.specimen` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.specimen` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:specimen.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "specimen"
},
{
"id": "Extension.extension:specimen.value[x]",
"path": "Extension.extension.value[x]",
"short": "The specimen used in the analysis event",
"definition": "The specimen used in the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Specimen|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Specimen"
}
]
},
{
"id": "Extension.extension:date",
"path": "Extension.extension",
"sliceName": "date",
"short": "R5: The date of the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.date` (new:dateTime)",
"comment": "Element `GenomicStudy.analysis.date` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.date` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.date` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.date` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.date` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.date` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:date.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "date"
},
{
"id": "Extension.extension:date.value[x]",
"path": "Extension.extension.value[x]",
"short": "The date of the analysis event",
"definition": "The date of the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "dateTime"
}
]
},
{
"id": "Extension.extension:note",
"path": "Extension.extension",
"sliceName": "note",
"short": "R5: Any notes capture with the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.note` (new:Annotation)",
"comment": "Element `GenomicStudy.analysis.note` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.note` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.note` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.note` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.note` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.note` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:note.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "note"
},
{
"id": "Extension.extension:note.value[x]",
"path": "Extension.extension.value[x]",
"short": "Any notes capture with the analysis event",
"definition": "Any notes capture with the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Annotation"
}
]
},
{
"id": "Extension.extension:protocolPerformed",
"path": "Extension.extension",
"sliceName": "protocolPerformed",
"short": "R5: The protocol that was performed for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.protocolPerformed` (new:Reference(Procedure,Task))",
"comment": "Element `GenomicStudy.analysis.protocolPerformed` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.protocolPerformed` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.protocolPerformed` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.protocolPerformed` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.protocolPerformed` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.protocolPerformed` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:protocolPerformed.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "protocolPerformed"
},
{
"id": "Extension.extension:protocolPerformed.value[x]",
"path": "Extension.extension.value[x]",
"short": "The protocol that was performed for the analysis event",
"definition": "The protocol that was performed for the analysis event.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Procedure|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Procedure"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Task|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Task"
}
]
},
{
"id": "Extension.extension:regionsStudied",
"path": "Extension.extension",
"sliceName": "regionsStudied",
"short": "R5: The genomic regions to be studied in the analysis (BED file) (new)",
"definition": "R5: `GenomicStudy.analysis.regionsStudied` (new:Reference(DocumentReference,Observation))",
"comment": "Element `GenomicStudy.analysis.regionsStudied` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.regionsStudied` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.regionsStudied` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.regionsStudied` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.regionsStudied` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.regionsStudied` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:regionsStudied.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "regionsStudied"
},
{
"id": "Extension.extension:regionsStudied.value[x]",
"path": "Extension.extension.value[x]",
"short": "The genomic regions to be studied in the analysis (BED file)",
"definition": "The genomic regions to be studied in the analysis (BED file).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-DocumentReference-for-Media|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Media"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Observation|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Observation"
}
]
},
{
"id": "Extension.extension:regionsCalled",
"path": "Extension.extension",
"sliceName": "regionsCalled",
"short": "R5: Genomic regions actually called in the analysis event (BED file) (new)",
"definition": "R5: `GenomicStudy.analysis.regionsCalled` (new:Reference(DocumentReference,Observation))",
"comment": "Element `GenomicStudy.analysis.regionsCalled` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.regionsCalled` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.regionsCalled` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.regionsCalled` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.regionsCalled` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.regionsCalled` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:regionsCalled.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "regionsCalled"
},
{
"id": "Extension.extension:regionsCalled.value[x]",
"path": "Extension.extension.value[x]",
"short": "Genomic regions actually called in the analysis event (BED file)",
"definition": "Genomic regions actually called in the analysis event (BED file).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-DocumentReference-for-Media|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Media"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Observation|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Observation"
}
]
},
{
"id": "Extension.extension:input",
"path": "Extension.extension",
"sliceName": "input",
"short": "R5: Inputs for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.input` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis.input` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.input` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.input` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.input` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:input.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"ordered": false,
"rules": "open"
},
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:input.extension:file",
"path": "Extension.extension.extension",
"sliceName": "file",
"short": "R5: File containing input data (new)",
"definition": "R5: `GenomicStudy.analysis.input.file` (new:Reference(DocumentReference))",
"comment": "Element `GenomicStudy.analysis.input.file` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.file` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.file` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.input.file` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.file` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.file` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:input.extension:file.url",
"path": "Extension.extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "file"
},
{
"id": "Extension.extension:input.extension:file.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "File containing input data",
"definition": "File containing input data.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-DocumentReference-for-Media|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Media"
}
]
},
{
"id": "Extension.extension:input.extension:type",
"path": "Extension.extension.extension",
"sliceName": "type",
"short": "R5: Type of input data (e.g., BAM, CRAM, or FASTA) (new)",
"definition": "R5: `GenomicStudy.analysis.input.type` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.input.type` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.type` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.type` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.input.type` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.type` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.type` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:input.extension:type.url",
"path": "Extension.extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "type"
},
{
"id": "Extension.extension:input.extension:type.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Type of input data (e.g., BAM, CRAM, or FASTA)",
"definition": "Type of input data, e.g., BAM, CRAM, or FASTA.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"binding": {
"strength": "example",
"description": "The data format of the data file.",
"valueSetUri": "http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-dataformat-for-R3|0.1.0"
}
},
{
"id": "Extension.extension:input.extension:generatedBy",
"path": "Extension.extension.extension",
"sliceName": "generatedBy",
"short": "R5: The analysis event or other GenomicStudy that generated this input file (new)",
"definition": "R5: `GenomicStudy.analysis.input.generatedBy[x]` (new:Identifier, Reference(GenomicStudy))",
"comment": "Element `GenomicStudy.analysis.input.generatedBy[x]` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.generatedBy[x]` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.generatedBy[x]` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.input.generatedBy[x]` is part of an existing definition because parent element `GenomicStudy.analysis.input` requires a cross-version extension.\nElement `GenomicStudy.analysis.input.generatedBy[x]` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.input.generatedBy[x]` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:input.extension:generatedBy.url",
"path": "Extension.extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "generatedBy"
},
{
"id": "Extension.extension:input.extension:generatedBy.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "The analysis event or other GenomicStudy that generated this input file",
"definition": "The analysis event or other GenomicStudy that generated this input file.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Identifier"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-GenomicStudy|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Basic"
}
]
},
{
"id": "Extension.extension:input.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "input"
},
{
"id": "Extension.extension:input.value[x]",
"path": "Extension.extension.value[x]",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
}
},
{
"id": "Extension.extension:output",
"path": "Extension.extension",
"sliceName": "output",
"short": "R5: Outputs for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.output` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis.output` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.output` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.output` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.output` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:output.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"ordered": false,
"rules": "open"
},
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:output.extension:file",
"path": "Extension.extension.extension",
"sliceName": "file",
"short": "R5: File containing output data (new)",
"definition": "R5: `GenomicStudy.analysis.output.file` (new:Reference(DocumentReference))",
"comment": "Element `GenomicStudy.analysis.output.file` is part of an existing definition because parent element `GenomicStudy.analysis.output` requires a cross-version extension.\nElement `GenomicStudy.analysis.output.file` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output.file` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.output.file` is part of an existing definition because parent element `GenomicStudy.analysis.output` requires a cross-version extension.\nElement `GenomicStudy.analysis.output.file` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output.file` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:output.extension:file.url",
"path": "Extension.extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "file"
},
{
"id": "Extension.extension:output.extension:file.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "File containing output data",
"definition": "File containing output data.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-DocumentReference-for-Media|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Media"
}
]
},
{
"id": "Extension.extension:output.extension:type",
"path": "Extension.extension.extension",
"sliceName": "type",
"short": "R5: Type of output data (e.g., VCF, MAF, or BAM) (new)",
"definition": "R5: `GenomicStudy.analysis.output.type` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.output.type` is part of an existing definition because parent element `GenomicStudy.analysis.output` requires a cross-version extension.\nElement `GenomicStudy.analysis.output.type` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output.type` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.output.type` is part of an existing definition because parent element `GenomicStudy.analysis.output` requires a cross-version extension.\nElement `GenomicStudy.analysis.output.type` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.output.type` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:output.extension:type.url",
"path": "Extension.extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "type"
},
{
"id": "Extension.extension:output.extension:type.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Type of output data (e.g., VCF, MAF, or BAM)",
"definition": "Type of output data, e.g., VCF, MAF, or BAM.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"binding": {
"strength": "example",
"description": "The data format of the data file.",
"valueSetUri": "http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-dataformat-for-R3|0.1.0"
}
},
{
"id": "Extension.extension:output.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "output"
},
{
"id": "Extension.extension:output.value[x]",
"path": "Extension.extension.value[x]",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
}
},
{
"id": "Extension.extension:performer",
"path": "Extension.extension",
"sliceName": "performer",
"short": "R5: Performer for the analysis event (new)",
"definition": "R5: `GenomicStudy.analysis.performer` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis.performer` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.performer` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:performer.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"ordered": false,
"rules": "open"
},
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:performer.extension:actor",
"path": "Extension.extension.extension",
"sliceName": "actor",
"short": "R5: The organization, healthcare professional, or others who participated in performing this analysis (new)",
"definition": "R5: `GenomicStudy.analysis.performer.actor` (new:Reference(Practitioner,PractitionerRole,Organization,Device))",
"comment": "Element `GenomicStudy.analysis.performer.actor` is part of an existing definition because parent element `GenomicStudy.analysis.performer` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer.actor` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer.actor` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.performer.actor` is part of an existing definition because parent element `GenomicStudy.analysis.performer` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer.actor` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer.actor` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:performer.extension:actor.url",
"path": "Extension.extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "actor"
},
{
"id": "Extension.extension:performer.extension:actor.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "The organization, healthcare professional, or others who participated in performing this analysis",
"definition": "The organization, healthcare professional, or others who participated in performing this analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Practitioner|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Practitioner"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-PractitionerRole|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/PractitionerRole"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Organization|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Organization"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Device|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Device"
}
]
},
{
"id": "Extension.extension:performer.extension:role",
"path": "Extension.extension.extension",
"sliceName": "role",
"short": "R5: Role of the actor for this analysis (new)",
"definition": "R5: `GenomicStudy.analysis.performer.role` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.performer.role` is part of an existing definition because parent element `GenomicStudy.analysis.performer` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer.role` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer.role` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.performer.role` is part of an existing definition because parent element `GenomicStudy.analysis.performer` requires a cross-version extension.\nElement `GenomicStudy.analysis.performer.role` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.performer.role` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:performer.extension:role.url",
"path": "Extension.extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "role"
},
{
"id": "Extension.extension:performer.extension:role.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Role of the actor for this analysis",
"definition": "Role of the actor for this analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
]
},
{
"id": "Extension.extension:performer.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "performer"
},
{
"id": "Extension.extension:performer.value[x]",
"path": "Extension.extension.value[x]",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
}
},
{
"id": "Extension.extension:device",
"path": "Extension.extension",
"sliceName": "device",
"short": "R5: Devices used for the analysis (e.g., instruments, software), with settings and parameters (new)",
"definition": "R5: `GenomicStudy.analysis.device` (new:BackboneElement)",
"comment": "Element `GenomicStudy.analysis.device` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.device` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.device` is part of an existing definition because parent element `GenomicStudy.analysis` requires a cross-version extension.\nElement `GenomicStudy.analysis.device` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:device.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"ordered": false,
"rules": "open"
},
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:device.extension:device",
"path": "Extension.extension.extension",
"sliceName": "device",
"short": "R5: Device used for the analysis (new)",
"definition": "R5: `GenomicStudy.analysis.device.device` (new:Reference(Device))",
"comment": "Element `GenomicStudy.analysis.device.device` is part of an existing definition because parent element `GenomicStudy.analysis.device` requires a cross-version extension.\nElement `GenomicStudy.analysis.device.device` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device.device` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.device.device` is part of an existing definition because parent element `GenomicStudy.analysis.device` requires a cross-version extension.\nElement `GenomicStudy.analysis.device.device` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device.device` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:device.extension:device.url",
"path": "Extension.extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "device"
},
{
"id": "Extension.extension:device.extension:device.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Device used for the analysis",
"definition": "Device used for the analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/5.0/StructureDefinition/profile-Device|0.1.0"
},
{
"code": "Reference",
"targetProfile": "http://hl7.org/fhir/StructureDefinition/Device"
}
]
},
{
"id": "Extension.extension:device.extension:function",
"path": "Extension.extension.extension",
"sliceName": "function",
"short": "R5: Specific function for the device used for the analysis (new)",
"definition": "R5: `GenomicStudy.analysis.device.function` (new:CodeableConcept)",
"comment": "Element `GenomicStudy.analysis.device.function` is part of an existing definition because parent element `GenomicStudy.analysis.device` requires a cross-version extension.\nElement `GenomicStudy.analysis.device.function` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device.function` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `GenomicStudy.analysis.device.function` is part of an existing definition because parent element `GenomicStudy.analysis.device` requires a cross-version extension.\nElement `GenomicStudy.analysis.device.function` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped.\nElement `GenomicStudy.analysis.device.function` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:device.extension:function.url",
"path": "Extension.extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "function"
},
{
"id": "Extension.extension:device.extension:function.value[x]",
"path": "Extension.extension.extension.value[x]",
"short": "Specific function for the device used for the analysis",
"definition": "Specific function for the device used for the analysis.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
]
},
{
"id": "Extension.extension:device.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "device"
},
{
"id": "Extension.extension:device.value[x]",
"path": "Extension.extension.value[x]",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
}
},
{
"id": "Extension.url",
"path": "Extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "http://hl7.org/fhir/5.0/StructureDefinition/extension-GenomicStudy.analysis"
},
{
"id": "Extension.value[x]",
"path": "Extension.value[x]",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
}
}
]
}
}