FHIR IG analytics| Package | hl7.fhir.uv.xver-r4b.r3 |
| Resource Type | StructureDefinition |
| Id | StructureDefinition-ext-R4B-MolecularSequence.qua.roc.json |
| FHIR Version | R3 |
| Source | http://hl7.org/fhir/uv/xver-r4b.r3/0.1.0/StructureDefinition-ext-R4B-MolecularSequence.qua.roc.html |
| URL | http://hl7.org/fhir/4.3/StructureDefinition/extension-MolecularSequence.quality.roc |
| Version | 0.1.0 |
| Status | active |
| Date | 2026-03-17T21:02:03.8104715+00:00 |
| Name | ExtensionMolecularSequence_Quality_Roc |
| Title | R4B: Receiver Operator Characteristic (ROC) Curve (new) |
| Realm | uv |
| Authority | hl7 |
| Description | R4B: `MolecularSequence.quality.roc` (new:BackboneElement) |
| Purpose | This extension is part of the cross-version definitions generated to enable use of the element `MolecularSequence.quality.roc` as defined in FHIR R4B in FHIR STU3. The source element is defined as: `MolecularSequence.quality.roc` 0..1 `BackboneElement` Across FHIR versions, the element set has been mapped as: * R4B: `MolecularSequence.quality.roc` 0..1 `BackboneElement` * R4: `MolecularSequence.quality.roc` 0..1 `BackboneElement` Following are the generation technical comments: Element `MolecularSequence.quality.roc` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.quality.roc` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). |
| Type | Extension |
| Kind | complex-type |
| ConceptMap | ||
| hl7.fhir.uv.xver-r4b.r3#0.1.0 | R4B-MolecularSequence-element-map-to-R3 | Cross-version mapping for FHIR R4B MolecularSequence to FHIR STU3 Sequence |
| StructureDefinition | ||
| hl7.fhir.uv.xver-r4b.r3#0.1.0 | profile-MolecularSequence-for-Sequence | Cross-version Profile for R4B.MolecularSequence for use in FHIR STU3 |
No resources found
No extension usage examples found
Note: links and images are rebased to the (stated) source
Generated Narrative: StructureDefinition ext-R4B-MolecularSequence.qua.roc
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
  Extension | 0..1 | Extension | R4B: Receiver Operator Characteristic (ROC) Curve (new) | |
  Slices for extension | 0..* | Extension | Extension Slice: Unordered, Open by value:url | |
   extension:score | 0..* | Extension | R4B: Genotype quality score (new) | |
  url | 1..1 | uri | "score" | |
  value[x] | 0..1 | integer | Genotype quality score | |
| extension:numTP | 0..* | Extension | R4B: Roc score true positive numbers (new) | |
| url | 1..1 | uri | "numTP" | |
| value[x] | 0..1 | integer | Roc score true positive numbers | |
| extension:numFP | 0..* | Extension | R4B: Roc score false positive numbers (new) | |
| url | 1..1 | uri | "numFP" | |
| value[x] | 0..1 | integer | Roc score false positive numbers | |
| extension:numFN | 0..* | Extension | R4B: Roc score false negative numbers (new) | |
| url | 1..1 | uri | "numFN" | |
| value[x] | 0..1 | integer | Roc score false negative numbers | |
| extension:precision | 0..* | Extension | R4B: Precision of the GQ score (new) | |
| url | 1..1 | uri | "precision" | |
| value[x] | 0..1 | decimal | Precision of the GQ score | |
| extension:sensitivity | 0..* | Extension | R4B: Sensitivity of the GQ score (new) | |
| url | 1..1 | uri | "sensitivity" | |
| value[x] | 0..1 | decimal | Sensitivity of the GQ score | |
 extension:fMeasure | 0..* | Extension | R4B: FScore of the GQ score (new) | |
 url | 1..1 | uri | "fMeasure" | |
| value[x] | 0..1 | decimal | FScore of the GQ score | |
| url | 1..1 | uri | "http://hl7.org/fhir/4.3/StructureDefinition/extension-MolecularSequence.quality.roc" | |
 value[x] | 0..0 | Value of extension | ||
| Documentation for this format | ||||
FHIR
FHIRsmith{
"resourceType": "StructureDefinition",
"id": "ext-R4B-MolecularSequence.qua.roc",
"text": {
"status": "extensions",
"div": "<!-- snip (see above) -->"
},
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode": "fhir"
},
{
"extension": [
{
"url": "packageId",
"valueId": "hl7.fhir.uv.xver-r4b.r3"
},
{
"url": "version",
"valueString": "0.1.0"
},
{
"url": "uri",
"valueUri": "http://hl7.org/fhir/uv/xver/ImplementationGuide/hl7.fhir.uv.xver-r4b.r3"
}
],
"url": "http://hl7.org/fhir/StructureDefinition/package-source"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
"valueInteger": 0,
"_valueInteger": {
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueUri": "http://hl7.org/fhir/uv/xver/ImplementationGuide/hl7.fhir.uv.xver-r4b.r3"
}
]
}
},
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
"valueCode": "trial-use",
"_valueCode": {
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueUri": "http://hl7.org/fhir/uv/xver/ImplementationGuide/hl7.fhir.uv.xver-r4b.r3"
}
]
}
}
],
"url": "http://hl7.org/fhir/4.3/StructureDefinition/extension-MolecularSequence.quality.roc",
"version": "0.1.0",
"name": "ExtensionMolecularSequence_Quality_Roc",
"title": "R4B: Receiver Operator Characteristic (ROC) Curve (new)",
"status": "active",
"experimental": false,
"date": "2026-03-17T21:02:03.8104715+00:00",
"publisher": "FHIR Infrastructure",
"contact": [
{
"name": "FHIR Infrastructure",
"telecom": [
{
"system": "url",
"value": "http://www.hl7.org/Special/committees/fiwg"
}
]
}
],
"description": "R4B: `MolecularSequence.quality.roc` (new:BackboneElement)",
"jurisdiction": [
{
"coding": [
{
"system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code": "001",
"display": "World"
}
]
}
],
"purpose": "This extension is part of the cross-version definitions generated to enable use of the\r\nelement `MolecularSequence.quality.roc` as defined in FHIR R4B\r\nin FHIR STU3.\r\n\r\nThe source element is defined as:\r\n`MolecularSequence.quality.roc` 0..1 `BackboneElement`\r\n\r\nAcross FHIR versions, the element set has been mapped as:\r\n* R4B: `MolecularSequence.quality.roc` 0..1 `BackboneElement`\n* R4: `MolecularSequence.quality.roc` 0..1 `BackboneElement`\r\n\r\nFollowing are the generation technical comments:\r\nElement `MolecularSequence.quality.roc` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"fhirVersion": "3.0.2",
"mapping": [
{
"identity": "rim",
"uri": "http://hl7.org/v3",
"name": "RIM Mapping"
}
],
"kind": "complex-type",
"abstract": false,
"contextType": "resource",
"context": [
"Sequence.quality"
],
"type": "Extension",
"baseDefinition": "http://hl7.org/fhir/StructureDefinition/Extension",
"derivation": "constraint",
"snapshot": {
"element": [
{
"id": "Extension",
"path": "Extension",
"short": "R4B: Receiver Operator Characteristic (ROC) Curve (new)",
"definition": "R4B: `MolecularSequence.quality.roc` (new:BackboneElement)",
"comment": "Element `MolecularSequence.quality.roc` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension",
"min": 0,
"max": "*"
},
"condition": [
"ele-1"
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() | (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), 'value')])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false
},
{
"id": "Extension.id",
"path": "Extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension",
"path": "Extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"ordered": false,
"rules": "open"
},
"short": "Extension",
"definition": "An Extension",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:score",
"path": "Extension.extension",
"sliceName": "score",
"short": "R4B: Genotype quality score (new)",
"definition": "R4B: `MolecularSequence.quality.roc.score` (new:integer)",
"comment": "Element `MolecularSequence.quality.roc.score` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.score` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.score` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `MolecularSequence.quality.roc.score` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.score` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.score` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:score.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:score.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:score.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "score",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:score.value[x]",
"path": "Extension.extension.value[x]",
"short": "Genotype quality score",
"definition": "Invidual data point representing the GQ (genotype quality) score threshold.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "integer"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:numTP",
"path": "Extension.extension",
"sliceName": "numTP",
"short": "R4B: Roc score true positive numbers (new)",
"definition": "R4B: `MolecularSequence.quality.roc.numTP` (new:integer)",
"comment": "Element `MolecularSequence.quality.roc.numTP` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.numTP` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.numTP` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `MolecularSequence.quality.roc.numTP` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.numTP` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.numTP` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:numTP.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:numTP.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:numTP.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "numTP",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:numTP.value[x]",
"path": "Extension.extension.value[x]",
"short": "Roc score true positive numbers",
"definition": "The number of true positives if the GQ score threshold was set to \"score\" field value.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "integer"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:numFP",
"path": "Extension.extension",
"sliceName": "numFP",
"short": "R4B: Roc score false positive numbers (new)",
"definition": "R4B: `MolecularSequence.quality.roc.numFP` (new:integer)",
"comment": "Element `MolecularSequence.quality.roc.numFP` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.numFP` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.numFP` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `MolecularSequence.quality.roc.numFP` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.numFP` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.numFP` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:numFP.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:numFP.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:numFP.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "numFP",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:numFP.value[x]",
"path": "Extension.extension.value[x]",
"short": "Roc score false positive numbers",
"definition": "The number of false positives if the GQ score threshold was set to \"score\" field value.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "integer"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:numFN",
"path": "Extension.extension",
"sliceName": "numFN",
"short": "R4B: Roc score false negative numbers (new)",
"definition": "R4B: `MolecularSequence.quality.roc.numFN` (new:integer)",
"comment": "Element `MolecularSequence.quality.roc.numFN` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.numFN` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.numFN` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `MolecularSequence.quality.roc.numFN` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.numFN` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.numFN` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:numFN.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:numFN.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:numFN.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "numFN",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:numFN.value[x]",
"path": "Extension.extension.value[x]",
"short": "Roc score false negative numbers",
"definition": "The number of false negatives if the GQ score threshold was set to \"score\" field value.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "integer"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:precision",
"path": "Extension.extension",
"sliceName": "precision",
"short": "R4B: Precision of the GQ score (new)",
"definition": "R4B: `MolecularSequence.quality.roc.precision` (new:decimal)",
"comment": "Element `MolecularSequence.quality.roc.precision` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.precision` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.precision` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `MolecularSequence.quality.roc.precision` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.precision` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.precision` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:precision.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:precision.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:precision.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "precision",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:precision.value[x]",
"path": "Extension.extension.value[x]",
"short": "Precision of the GQ score",
"definition": "Calculated precision if the GQ score threshold was set to \"score\" field value.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "decimal"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:sensitivity",
"path": "Extension.extension",
"sliceName": "sensitivity",
"short": "R4B: Sensitivity of the GQ score (new)",
"definition": "R4B: `MolecularSequence.quality.roc.sensitivity` (new:decimal)",
"comment": "Element `MolecularSequence.quality.roc.sensitivity` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.sensitivity` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.sensitivity` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `MolecularSequence.quality.roc.sensitivity` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.sensitivity` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.sensitivity` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:sensitivity.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:sensitivity.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:sensitivity.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "sensitivity",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:sensitivity.value[x]",
"path": "Extension.extension.value[x]",
"short": "Sensitivity of the GQ score",
"definition": "Calculated sensitivity if the GQ score threshold was set to \"score\" field value.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "decimal"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:fMeasure",
"path": "Extension.extension",
"sliceName": "fMeasure",
"short": "R4B: FScore of the GQ score (new)",
"definition": "R4B: `MolecularSequence.quality.roc.fMeasure` (new:decimal)",
"comment": "Element `MolecularSequence.quality.roc.fMeasure` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.fMeasure` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.fMeasure` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `MolecularSequence.quality.roc.fMeasure` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.fMeasure` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.fMeasure` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"id": "Extension.extension:fMeasure.id",
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:fMeasure.extension",
"path": "Extension.extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional Content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "Extension.extension:fMeasure.url",
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "fMeasure",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.extension:fMeasure.value[x]",
"path": "Extension.extension.value[x]",
"short": "FScore of the GQ score",
"definition": "Calculated fScore if the GQ score threshold was set to \"score\" field value.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "decimal"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.url",
"path": "Extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "http://hl7.org/fhir/4.3/StructureDefinition/extension-MolecularSequence.quality.roc",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "Extension.value[x]",
"path": "Extension.value[x]",
"short": "Value of extension",
"definition": "Value of extension - may be a resource or one of a constrained set of the data types (see Extensibility in the spec for list).",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "base64Binary"
},
{
"code": "boolean"
},
{
"code": "code"
},
{
"code": "date"
},
{
"code": "dateTime"
},
{
"code": "decimal"
},
{
"code": "id"
},
{
"code": "instant"
},
{
"code": "integer"
},
{
"code": "markdown"
},
{
"code": "oid"
},
{
"code": "positiveInt"
},
{
"code": "string"
},
{
"code": "time"
},
{
"code": "unsignedInt"
},
{
"code": "uri"
},
{
"code": "Address"
},
{
"code": "Age"
},
{
"code": "Annotation"
},
{
"code": "Attachment"
},
{
"code": "CodeableConcept"
},
{
"code": "Coding"
},
{
"code": "ContactPoint"
},
{
"code": "Count"
},
{
"code": "Distance"
},
{
"code": "Duration"
},
{
"code": "HumanName"
},
{
"code": "Identifier"
},
{
"code": "Money"
},
{
"code": "Period"
},
{
"code": "Quantity"
},
{
"code": "Range"
},
{
"code": "Ratio"
},
{
"code": "Reference"
},
{
"code": "SampledData"
},
{
"code": "Signature"
},
{
"code": "Timing"
},
{
"code": "Meta"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
}
]
},
"differential": {
"element": [
{
"id": "Extension",
"path": "Extension",
"short": "R4B: Receiver Operator Characteristic (ROC) Curve (new)",
"definition": "R4B: `MolecularSequence.quality.roc` (new:BackboneElement)",
"comment": "Element `MolecularSequence.quality.roc` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "1",
"base": {
"path": "Extension",
"min": 0,
"max": "*"
},
"isModifier": false
},
{
"id": "Extension.extension",
"path": "Extension.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"ordered": false,
"rules": "open"
},
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:score",
"path": "Extension.extension",
"sliceName": "score",
"short": "R4B: Genotype quality score (new)",
"definition": "R4B: `MolecularSequence.quality.roc.score` (new:integer)",
"comment": "Element `MolecularSequence.quality.roc.score` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.score` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.score` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `MolecularSequence.quality.roc.score` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.score` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.score` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:score.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "score"
},
{
"id": "Extension.extension:score.value[x]",
"path": "Extension.extension.value[x]",
"short": "Genotype quality score",
"definition": "Invidual data point representing the GQ (genotype quality) score threshold.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
},
{
"id": "Extension.extension:numTP",
"path": "Extension.extension",
"sliceName": "numTP",
"short": "R4B: Roc score true positive numbers (new)",
"definition": "R4B: `MolecularSequence.quality.roc.numTP` (new:integer)",
"comment": "Element `MolecularSequence.quality.roc.numTP` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.numTP` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.numTP` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `MolecularSequence.quality.roc.numTP` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.numTP` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.numTP` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:numTP.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "numTP"
},
{
"id": "Extension.extension:numTP.value[x]",
"path": "Extension.extension.value[x]",
"short": "Roc score true positive numbers",
"definition": "The number of true positives if the GQ score threshold was set to \"score\" field value.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
},
{
"id": "Extension.extension:numFP",
"path": "Extension.extension",
"sliceName": "numFP",
"short": "R4B: Roc score false positive numbers (new)",
"definition": "R4B: `MolecularSequence.quality.roc.numFP` (new:integer)",
"comment": "Element `MolecularSequence.quality.roc.numFP` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.numFP` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.numFP` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `MolecularSequence.quality.roc.numFP` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.numFP` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.numFP` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:numFP.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "numFP"
},
{
"id": "Extension.extension:numFP.value[x]",
"path": "Extension.extension.value[x]",
"short": "Roc score false positive numbers",
"definition": "The number of false positives if the GQ score threshold was set to \"score\" field value.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
},
{
"id": "Extension.extension:numFN",
"path": "Extension.extension",
"sliceName": "numFN",
"short": "R4B: Roc score false negative numbers (new)",
"definition": "R4B: `MolecularSequence.quality.roc.numFN` (new:integer)",
"comment": "Element `MolecularSequence.quality.roc.numFN` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.numFN` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.numFN` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `MolecularSequence.quality.roc.numFN` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.numFN` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.numFN` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:numFN.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "numFN"
},
{
"id": "Extension.extension:numFN.value[x]",
"path": "Extension.extension.value[x]",
"short": "Roc score false negative numbers",
"definition": "The number of false negatives if the GQ score threshold was set to \"score\" field value.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
},
{
"id": "Extension.extension:precision",
"path": "Extension.extension",
"sliceName": "precision",
"short": "R4B: Precision of the GQ score (new)",
"definition": "R4B: `MolecularSequence.quality.roc.precision` (new:decimal)",
"comment": "Element `MolecularSequence.quality.roc.precision` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.precision` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.precision` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `MolecularSequence.quality.roc.precision` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.precision` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.precision` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:precision.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "precision"
},
{
"id": "Extension.extension:precision.value[x]",
"path": "Extension.extension.value[x]",
"short": "Precision of the GQ score",
"definition": "Calculated precision if the GQ score threshold was set to \"score\" field value.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "decimal"
}
]
},
{
"id": "Extension.extension:sensitivity",
"path": "Extension.extension",
"sliceName": "sensitivity",
"short": "R4B: Sensitivity of the GQ score (new)",
"definition": "R4B: `MolecularSequence.quality.roc.sensitivity` (new:decimal)",
"comment": "Element `MolecularSequence.quality.roc.sensitivity` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.sensitivity` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.sensitivity` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `MolecularSequence.quality.roc.sensitivity` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.sensitivity` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.sensitivity` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:sensitivity.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "sensitivity"
},
{
"id": "Extension.extension:sensitivity.value[x]",
"path": "Extension.extension.value[x]",
"short": "Sensitivity of the GQ score",
"definition": "Calculated sensitivity if the GQ score threshold was set to \"score\" field value.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "decimal"
}
]
},
{
"id": "Extension.extension:fMeasure",
"path": "Extension.extension",
"sliceName": "fMeasure",
"short": "R4B: FScore of the GQ score (new)",
"definition": "R4B: `MolecularSequence.quality.roc.fMeasure` (new:decimal)",
"comment": "Element `MolecularSequence.quality.roc.fMeasure` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.fMeasure` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.fMeasure` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"requirements": "Element `MolecularSequence.quality.roc.fMeasure` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension.\nElement `MolecularSequence.quality.roc.fMeasure` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`.\nElement `MolecularSequence.quality.roc.fMeasure` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
}
},
{
"id": "Extension.extension:fMeasure.url",
"path": "Extension.extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "fMeasure"
},
{
"id": "Extension.extension:fMeasure.value[x]",
"path": "Extension.extension.value[x]",
"short": "FScore of the GQ score",
"definition": "Calculated fScore if the GQ score threshold was set to \"score\" field value.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "decimal"
}
]
},
{
"id": "Extension.url",
"path": "Extension.url",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"fixedUri": "http://hl7.org/fhir/4.3/StructureDefinition/extension-MolecularSequence.quality.roc"
},
{
"id": "Extension.value[x]",
"path": "Extension.value[x]",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
}
}
]
}
}