FHIR © HL7.org  |  FHIRsmith 4.0.1  |  Server Home  |  XIG Home  |  XIG Stats  | 

FHIR IG analytics

Packagehl7.fhir.uv.xver-r3.r5
Resource TypeConceptMap
IdConceptMap-R3-Sequence-element-map-to-R5.json
FHIR VersionR5
Sourcehttp://hl7.org/fhir/uv/xver-r3.r5/0.1.0/ConceptMap-R3-Sequence-element-map-to-R5.html
URLhttp://hl7.org/fhir/uv/xver/ConceptMap/R3-Sequence-element-map-to-R5
Version0.1.0
Statusactive
Date2026-03-17T16:05:00.458892-05:00
NameR3SequenceElementMapToR5
TitleCross-version mapping for FHIR STU3 Sequence to FHIR R5 MolecularSequence
Realmuv
Authorityhl7
DescriptionThis ConceptMap represents cross-version mappings for elements from a FHIR STU3 Sequence to FHIR R5.

Resources that use this resource

No resources found


Resources that this resource uses

StructureDefinition
hl7.fhir.uv.xver-r3.r5#0.1.0extension-Sequence.coordinateSystemSTU3: Base number of coordinate system (0 for 0-based numbering or coordinates, inclusive start, exclusive end, 1 for 1-based numbering, inclusive start, inclusive end) (new)
hl7.fhir.uv.xver-r3.r4b#0.1.0extension-Sequence.identifierSTU3: identifier additional types
hl7.fhir.uv.xver-r3.r4b#0.1.0extension-Sequence.metaSTU3: meta additional types
hl7.fhir.uv.xver-r3.r5#0.1.0extension-Sequence.observedSeqSTU3: Sequence that was observed (new)
hl7.fhir.uv.xver-r3.r4b.r4#0.0.1-snapshot-2extension-Sequence.pointerCross-version Extension for R3.Sequence.pointer for use in FHIR R4B
hl7.fhir.uv.xver-r3.r5#0.1.0extension-Sequence.qualitySTU3: An set of value as quality of sequence (new)
hl7.fhir.uv.xver-r3.r5#0.1.0extension-Sequence.quantitySTU3: The number of copies of the seqeunce of interest. (RNASeq) (new)
hl7.fhir.uv.xver-r3.r5#0.1.0extension-Sequence.readCoverageSTU3: Average number of reads representing a given nucleotide in the reconstructed sequence (new)
hl7.fhir.uv.xver-r3.r5#0.1.0extension-Sequence.referenceSeq.genomeBuildSTU3: The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37' (new)
hl7.fhir.uv.xver-r3.r5#0.1.0extension-Sequence.referenceSeq.referenceSeqIdSTU3: Reference identifier (new)
hl7.fhir.uv.xver-r3.r4b.r4#0.0.1-snapshot-2extension-Sequence.referenceSeq.referenceSeqPointerCross-version Extension for R3.Sequence.referenceSeq.referenceSeqPointer for use in FHIR R4B
hl7.fhir.uv.xver-r3.r5#0.1.0extension-Sequence.referenceSeq.referenceSeqStringSTU3: A string to represent reference sequence (new)
hl7.fhir.uv.xver-r3.r4b#0.1.0extension-Sequence.referenceSeq.strandSTU3: Directionality of DNA ( +1/-1) additional types
hl7.fhir.uv.xver-r3.r5#0.1.0extension-Sequence.referenceSeq.windowEndSTU3: End position of the window on the reference sequence (new)
hl7.fhir.uv.xver-r3.r5#0.1.0extension-Sequence.referenceSeq.windowStartSTU3: Start position of the window on the reference sequence (new)
hl7.fhir.uv.xver-r3.r5#0.1.0extension-Sequence.repositorySTU3: External repository which contains detailed report related with observedSeq in this resource (new)
hl7.fhir.uv.xver-r3.r4b#0.1.0extension-Sequence.textSTU3: text additional types
hl7.fhir.uv.xver-r3.r5#0.1.0extension-Sequence.variant.cigarSTU3: Extended CIGAR string for aligning the sequence with reference bases (new)
hl7.fhir.uv.xver-r3.r5#0.1.0extension-Sequence.variant.endSTU3: End position of the variant on the reference sequence (new)
hl7.fhir.uv.xver-r3.r5#0.1.0extension-Sequence.variant.startSTU3: Start position of the variant on the reference sequence (new)
hl7.fhir.uv.xver-r3.r5#0.1.0extension-Sequence.variant.variantPointerSTU3: Pointer to observed variant information (new)

Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: ConceptMap R3-Sequence-element-map-to-R5

Mapping from http://hl7.org/fhir/3.0 to http://hl7.org/fhir/5.0


Group 1 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to MolecularSequenceversion: 5.0.0)

Source CodeRelationshipTarget CodeComment
Sequence.meta (meta)is broader thanMolecularSequence.metaElement `Sequence.meta` is mapped to FHIR R5 element `MolecularSequence.meta` as `SourceIsBroaderThanTarget`. The mappings for `Sequence.meta` do not cover the following types: Meta. The mappings for `Sequence.meta` do not cover the following types based on type expansion: lastUpdated, profile, security, tag, versionId.
Sequence.implicitRules (implicitRules)is equivalent toMolecularSequence.implicitRulesElement `Sequence.implicitRules` is mapped to FHIR R5 element `MolecularSequence.implicitRules` as `Equivalent`. Asserting this rule set restricts the content to be only understood by a limited set of trading partners. This inherently limits the usefulness of the data in the long term. However, the existing health eco-system is highly fractured, and not yet ready to define, collect, and exchange data in a generally computable sense. Wherever possible, implementers and/or specification writers should avoid using this element. This element is labelled as a modifier because the implicit rules may provide additional knowledge about the resource that modifies it's meaning or interpretation.
Sequence.language (language)is equivalent toMolecularSequence.languageElement `Sequence.language` is mapped to FHIR R5 element `MolecularSequence.language` as `Equivalent`. Language is provided to support indexing and accessibility (typically, services such as text to speech use the language tag). The html language tag in the narrative applies to the narrative. The language tag on the resource may be used to specify the language of other presentations generated from the data in the resource Not all the content has to be in the base language. The Resource.language should not be assumed to apply to the narrative automatically. If a language is specified, it should it also be specified on the div element in the html (see rules in HTML5 for information about the relationship between xml:lang and the html lang attribute).
Sequence.text (text)is broader thanMolecularSequence.textElement `Sequence.text` is mapped to FHIR R5 element `MolecularSequence.text` as `SourceIsBroaderThanTarget`. The mappings for `Sequence.text` do not cover the following types: Narrative. The mappings for `Sequence.text` do not cover the following types based on type expansion: div, status. Contained resources do not have narrative. Resources that are not contained SHOULD have a narrative. In some cases, a resource may only have text with little or no additional discrete data (as long as all minOccurs=1 elements are satisfied). This may be necessary for data from legacy systems where information is captured as a "text blob" or where text is additionally entered raw or narrated and encoded in formation is added later.
Sequence.contained (contained)is equivalent toMolecularSequence.containedElement `Sequence.contained` is mapped to FHIR R5 element `MolecularSequence.contained` as `SourceIsBroaderThanTarget`. This should never be done when the content can be identified properly, as once identification is lost, it is extremely difficult (and context dependent) to restore it again.
Sequence.identifier (identifier)is broader thanMolecularSequence.identifierElement `Sequence.identifier` is mapped to FHIR R5 element `MolecularSequence.identifier` as `SourceIsBroaderThanTarget`. The mappings for `Sequence.identifier` do not cover the following types: Identifier. The mappings for `Sequence.identifier` do not cover the following types based on type expansion: assigner, period, system, type, use, value.
Sequence.type (type)is equivalent toMolecularSequence.typeElement `Sequence.type` is mapped to FHIR R5 element `MolecularSequence.type` as `Equivalent`.
Sequence.patient (patient)is broader thanMolecularSequence.subjectElement `Sequence.patient` is mapped to FHIR R5 element `MolecularSequence.subject` as `SourceIsBroaderThanTarget`. The mappings for `Sequence.patient` do not cover the following types based on type expansion: display, identifier, reference. The standard extension `alternate-reference` has been mapped as the representation of FHIR STU3 element `Sequence.patient` with unmapped reference targets: Patient.
Sequence.specimen (specimen)is broader thanMolecularSequence.specimenElement `Sequence.specimen` is mapped to FHIR R5 element `MolecularSequence.specimen` as `SourceIsBroaderThanTarget`. The mappings for `Sequence.specimen` do not cover the following types based on type expansion: display, identifier, reference. The standard extension `alternate-reference` has been mapped as the representation of FHIR STU3 element `Sequence.specimen` with unmapped reference targets: Specimen.
Sequence.device (device)is broader thanMolecularSequence.deviceElement `Sequence.device` is mapped to FHIR R5 element `MolecularSequence.device` as `SourceIsBroaderThanTarget`. The mappings for `Sequence.device` do not cover the following types based on type expansion: display, identifier, reference. The standard extension `alternate-reference` has been mapped as the representation of FHIR STU3 element `Sequence.device` with unmapped reference targets: Device.
Sequence.performer (performer)is broader thanMolecularSequence.performerElement `Sequence.performer` is mapped to FHIR R5 element `MolecularSequence.performer` as `SourceIsBroaderThanTarget`. The mappings for `Sequence.performer` do not cover the following types based on type expansion: display, identifier, reference. The standard extension `alternate-reference` has been mapped as the representation of FHIR STU3 element `Sequence.performer` with unmapped reference targets: Organization.
Sequence.referenceSeq (referenceSeq)is related toMolecularSequence.relativeElement `Sequence.referenceSeq` is mapped to FHIR R5 element `MolecularSequence.relative` as `SourceIsNarrowerThanTarget`.
Sequence.referenceSeq.chromosome (chromosome)is equivalent toMolecularSequence.relative.startingSequence.chromosomeElement `Sequence.referenceSeq.chromosome` is mapped to FHIR R5 element `MolecularSequence.relative.startingSequence.chromosome` as `Equivalent`.
Sequence.referenceSeq.strand (strand)is broader thanMolecularSequence.relative.startingSequence.strandElement `Sequence.referenceSeq.strand` is mapped to FHIR R5 element `MolecularSequence.relative.startingSequence.strand` as `SourceIsBroaderThanTarget`. The mappings for `Sequence.referenceSeq.strand` do not cover the following types: integer. The mappings for `Sequence.referenceSeq.strand` do not cover the following types based on type expansion: value.
Sequence.variant (variant)is broader thanMolecularSequence.relativeElement `Sequence.variant` is mapped to FHIR R5 element `MolecularSequence.relative` as `Equivalent`.
Sequence.variant.observedAllele (observedAllele)is equivalent toMolecularSequence.relative.edit.replacementSequenceElement `Sequence.variant.observedAllele` is mapped to FHIR R5 element `MolecularSequence.relative.edit.replacementSequence` as `Equivalent`.
Sequence.variant.referenceAllele (referenceAllele)is equivalent toMolecularSequence.relative.edit.replacedSequenceElement `Sequence.variant.referenceAllele` is mapped to FHIR R5 element `MolecularSequence.relative.edit.replacedSequence` as `Equivalent`.

Group 2 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: meta additional typesversion: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.meta (meta)is broader thanExtension (STU3: meta additional types)Element `Sequence.meta` is mapped to FHIR R5 element `MolecularSequence.meta` as `SourceIsBroaderThanTarget`. The mappings for `Sequence.meta` do not cover the following types: Meta. The mappings for `Sequence.meta` do not cover the following types based on type expansion: lastUpdated, profile, security, tag, versionId.

Group 3 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: text additional typesversion: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.text (text)is broader thanExtension (STU3: text additional types)Element `Sequence.text` is mapped to FHIR R5 element `MolecularSequence.text` as `SourceIsBroaderThanTarget`. The mappings for `Sequence.text` do not cover the following types: Narrative. The mappings for `Sequence.text` do not cover the following types based on type expansion: div, status. Contained resources do not have narrative. Resources that are not contained SHOULD have a narrative. In some cases, a resource may only have text with little or no additional discrete data (as long as all minOccurs=1 elements are satisfied). This may be necessary for data from legacy systems where information is captured as a "text blob" or where text is additionally entered raw or narrated and encoded in formation is added later.

Group 4 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: Unique ID for this particular sequence. This is a FHIR-defined id additional typesversion: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.identifier (identifier)is broader thanExtension (STU3: Unique ID for this particular sequence. This is a FHIR-defined id additional types)Element `Sequence.identifier` is mapped to FHIR R5 element `MolecularSequence.identifier` as `SourceIsBroaderThanTarget`. The mappings for `Sequence.identifier` do not cover the following types: Identifier. The mappings for `Sequence.identifier` do not cover the following types based on type expansion: assigner, period, system, type, use, value.

Group 5 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: Base number of coordinate system (0 for 0-based numbering or coordinates, inclusive start, exclusive end, 1 for 1-based numbering, inclusive start, inclusive end) (new)version: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.coordinateSystem (coordinateSystem)is equivalent toExtension (STU3: Base number of coordinate system (0 for 0-based numbering or coordinates, inclusive start, exclusive end, 1 for 1-based numbering, inclusive start, inclusive end) (new))Element `Sequence.coordinateSystem` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.coordinateSystem` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).

Group 6 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: The number of copies of the seqeunce of interest. (RNASeq) (new)version: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.quantity (quantity)is equivalent toExtension (STU3: The number of copies of the seqeunce of interest. (RNASeq) (new))Element `Sequence.quantity` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.quantity` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).

Group 7 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37' (new)version: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.referenceSeq.genomeBuild (genomeBuild)is equivalent toExtension (STU3: The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37' (new))Element `Sequence.referenceSeq.genomeBuild` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.referenceSeq.genomeBuild` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).

Group 8 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: Reference identifier (new)version: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.referenceSeq.referenceSeqId (referenceSeqId)is equivalent toExtension (STU3: Reference identifier (new))Element `Sequence.referenceSeq.referenceSeqId` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.referenceSeq.referenceSeqId` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).

Group 9 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: A Pointer to another Sequence entity as reference sequence (new)version: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.referenceSeq.referenceSeqPointer (referenceSeqPointer)is equivalent toExtension (STU3: A Pointer to another Sequence entity as reference sequence (new))Element `Sequence.referenceSeq.referenceSeqPointer` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.referenceSeq.referenceSeqPointer` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).

Group 10 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: A string to represent reference sequence (new)version: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.referenceSeq.referenceSeqString (referenceSeqString)is equivalent toExtension (STU3: A string to represent reference sequence (new))Element `Sequence.referenceSeq.referenceSeqString` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.referenceSeq.referenceSeqString` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).

Group 11 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: Directionality of DNA ( +1/-1) additional typesversion: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.referenceSeq.strand (strand)is broader thanExtension (STU3: Directionality of DNA ( +1/-1) additional types)Element `Sequence.referenceSeq.strand` is mapped to FHIR R5 element `MolecularSequence.relative.startingSequence.strand` as `SourceIsBroaderThanTarget`. The mappings for `Sequence.referenceSeq.strand` do not cover the following types: integer. The mappings for `Sequence.referenceSeq.strand` do not cover the following types based on type expansion: value.

Group 12 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: Start position of the window on the reference sequence (new)version: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.referenceSeq.windowStart (windowStart)is equivalent toExtension (STU3: Start position of the window on the reference sequence (new))Element `Sequence.referenceSeq.windowStart` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.referenceSeq.windowStart` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).

Group 13 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: End position of the window on the reference sequence (new)version: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.referenceSeq.windowEnd (windowEnd)is equivalent toExtension (STU3: End position of the window on the reference sequence (new))Element `Sequence.referenceSeq.windowEnd` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.referenceSeq.windowEnd` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).

Group 14 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: Start position of the variant on the reference sequence (new)version: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.variant.start (start)is equivalent toExtension (STU3: Start position of the variant on the reference sequence (new))Element `Sequence.variant.start` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.variant.start` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).

Group 15 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: End position of the variant on the reference sequence (new)version: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.variant.end (end)is equivalent toExtension (STU3: End position of the variant on the reference sequence (new))Element `Sequence.variant.end` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.variant.end` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).

Group 16 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: Extended CIGAR string for aligning the sequence with reference bases (new)version: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.variant.cigar (cigar)is equivalent toExtension (STU3: Extended CIGAR string for aligning the sequence with reference bases (new))Element `Sequence.variant.cigar` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.variant.cigar` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).

Group 17 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: Pointer to observed variant information (new)version: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.variant.variantPointer (variantPointer)is equivalent toExtension (STU3: Pointer to observed variant information (new))Element `Sequence.variant.variantPointer` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.variant.variantPointer` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).

Group 18 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: Sequence that was observed (new)version: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.observedSeq (observedSeq)is equivalent toExtension (STU3: Sequence that was observed (new))Element `Sequence.observedSeq` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.observedSeq` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).

Group 19 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: An set of value as quality of sequence (new)version: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.quality (quality)is equivalent toExtension (STU3: An set of value as quality of sequence (new))Element `Sequence.quality` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.quality` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.quality.type (type)is equivalent toExtension.extension:type (STU3: indel | snp | unknown (new))Element `Sequence.quality.type` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension. Element `Sequence.quality.type` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.quality.type` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.quality.standardSequence (standardSequence)is equivalent toExtension.extension:standardSequence (STU3: Standard sequence for comparison (new))Element `Sequence.quality.standardSequence` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension. Element `Sequence.quality.standardSequence` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.quality.standardSequence` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.quality.start (start)is equivalent toExtension.extension:start (STU3: Start position of the sequence (new))Element `Sequence.quality.start` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension. Element `Sequence.quality.start` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.quality.start` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.quality.end (end)is equivalent toExtension.extension:end (STU3: End position of the sequence (new))Element `Sequence.quality.end` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension. Element `Sequence.quality.end` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.quality.end` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.quality.score (score)is equivalent toExtension.extension:score (STU3: Quality score for the comparison (new))Element `Sequence.quality.score` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension. Element `Sequence.quality.score` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.quality.score` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.quality.method (method)is equivalent toExtension.extension:method (STU3: Method to get quality (new))Element `Sequence.quality.method` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension. Element `Sequence.quality.method` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.quality.method` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.quality.truthTP (truthTP)is equivalent toExtension.extension:truthTP (STU3: True positives from the perspective of the truth data (new))Element `Sequence.quality.truthTP` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension. Element `Sequence.quality.truthTP` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.quality.truthTP` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.quality.queryTP (queryTP)is equivalent toExtension.extension:queryTP (STU3: True positives from the perspective of the query data (new))Element `Sequence.quality.queryTP` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension. Element `Sequence.quality.queryTP` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.quality.queryTP` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.quality.truthFN (truthFN)is equivalent toExtension.extension:truthFN (STU3: False negatives (new))Element `Sequence.quality.truthFN` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension. Element `Sequence.quality.truthFN` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.quality.truthFN` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.quality.queryFP (queryFP)is equivalent toExtension.extension:queryFP (STU3: False positives (new))Element `Sequence.quality.queryFP` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension. Element `Sequence.quality.queryFP` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.quality.queryFP` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.quality.gtFP (gtFP)is equivalent toExtension.extension:gtFP (STU3: False positives where the non-REF alleles in the Truth and Query Call Sets match (new))Element `Sequence.quality.gtFP` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension. Element `Sequence.quality.gtFP` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.quality.gtFP` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.quality.precision (precision)is equivalent toExtension.extension:precision (STU3: Precision of comparison (new))Element `Sequence.quality.precision` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension. Element `Sequence.quality.precision` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.quality.precision` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.quality.recall (recall)is equivalent toExtension.extension:recall (STU3: Recall of comparison (new))Element `Sequence.quality.recall` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension. Element `Sequence.quality.recall` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.quality.recall` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.quality.fScore (fScore)is equivalent toExtension.extension:fScore (STU3: F-score (new))Element `Sequence.quality.fScore` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension. Element `Sequence.quality.fScore` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.quality.fScore` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).

Group 20 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: Average number of reads representing a given nucleotide in the reconstructed sequence (new)version: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.readCoverage (readCoverage)is equivalent toExtension (STU3: Average number of reads representing a given nucleotide in the reconstructed sequence (new))Element `Sequence.readCoverage` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.readCoverage` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).

Group 21 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: External repository which contains detailed report related with observedSeq in this resource (new)version: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.repository (repository)is equivalent toExtension (STU3: External repository which contains detailed report related with observedSeq in this resource (new))Element `Sequence.repository` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.repository` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.repository.type (type)is equivalent toExtension.extension:type (STU3: directlink | openapi | login | oauth | other (new))Element `Sequence.repository.type` is part of an existing definition because parent element `Sequence.repository` requires a cross-version extension. Element `Sequence.repository.type` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.repository.type` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.repository.url (url)is equivalent toExtension.extension:url (STU3: URI of the repository (new))Element `Sequence.repository.url` is part of an existing definition because parent element `Sequence.repository` requires a cross-version extension. Element `Sequence.repository.url` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.repository.url` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.repository.name (name)is equivalent toExtension.extension:name (STU3: Repository's name (new))Element `Sequence.repository.name` is part of an existing definition because parent element `Sequence.repository` requires a cross-version extension. Element `Sequence.repository.name` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.repository.name` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.repository.datasetId (datasetId)is equivalent toExtension.extension:datasetId (STU3: Id of the dataset that used to call for dataset in repository (new))Element `Sequence.repository.datasetId` is part of an existing definition because parent element `Sequence.repository` requires a cross-version extension. Element `Sequence.repository.datasetId` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.repository.datasetId` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.repository.variantsetId (variantsetId)is equivalent toExtension.extension:variantsetId (STU3: Id of the variantset that used to call for variantset in repository (new))Element `Sequence.repository.variantsetId` is part of an existing definition because parent element `Sequence.repository` requires a cross-version extension. Element `Sequence.repository.variantsetId` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.repository.variantsetId` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).
Sequence.repository.readsetId (readsetId)is equivalent toExtension.extension:readsetId (STU3: Id of the read (new))Element `Sequence.repository.readsetId` is part of an existing definition because parent element `Sequence.repository` requires a cross-version extension. Element `Sequence.repository.readsetId` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.repository.readsetId` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).

Group 22 Mapping from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 to STU3: Pointer to next atomic sequence (new)version: 0.1.0)

Source CodeRelationshipTarget CodeComment
Sequence.pointer (pointer)is equivalent toExtension (STU3: Pointer to next atomic sequence (new))Element `Sequence.pointer` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`. Element `Sequence.pointer` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element).

Source1

{
  "resourceType": "ConceptMap",
  "id": "R3-Sequence-element-map-to-R5",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
      "valueCode": "fhir"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
      "valueInteger": 0,
      "_valueInteger": {
        "extension": [
          {
            "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
            "valueCanonical": "http://hl7.org/fhir/uv/xver/ImplementationGuide/hl7.fhir.uv.xver-r3.r5"
          }
        ]
      }
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
      "valueCode": "trial-use",
      "_valueCode": {
        "extension": [
          {
            "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
            "valueCanonical": "http://hl7.org/fhir/uv/xver/ImplementationGuide/hl7.fhir.uv.xver-r3.r5"
          }
        ]
      }
    }
  ],
  "url": "http://hl7.org/fhir/uv/xver/ConceptMap/R3-Sequence-element-map-to-R5",
  "version": "0.1.0",
  "name": "R3SequenceElementMapToR5",
  "title": "Cross-version mapping for FHIR STU3 Sequence to FHIR R5 MolecularSequence",
  "status": "active",
  "experimental": false,
  "date": "2026-03-17T16:05:00.458892-05:00",
  "contact": [
    {
      "name": "FHIR Infrastructure",
      "telecom": [
        {
          "system": "url",
          "value": "http://www.hl7.org/Special/committees/fiwg"
        }
      ]
    }
  ],
  "description": "This ConceptMap represents cross-version mappings for elements from a FHIR STU3 Sequence to FHIR R5.",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
          "code": "001",
          "display": "World"
        }
      ]
    }
  ],
  "sourceScopeCanonical": "http://hl7.org/fhir/3.0",
  "targetScopeUri": "http://hl7.org/fhir/5.0",
  "group": [
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/StructureDefinition/MolecularSequence|5.0.0",
      "element": [
        {
          "code": "Sequence.meta",
          "display": "meta",
          "target": [
            {
              "code": "MolecularSequence.meta",
              "display": "MolecularSequence.meta",
              "relationship": "source-is-broader-than-target",
              "comment": "Element `Sequence.meta` is mapped to FHIR R5 element `MolecularSequence.meta` as `SourceIsBroaderThanTarget`.\nThe mappings for `Sequence.meta` do not cover the following types: Meta.\nThe mappings for `Sequence.meta` do not cover the following types based on type expansion: lastUpdated, profile, security, tag, versionId."
            }
          ]
        },
        {
          "code": "Sequence.implicitRules",
          "display": "implicitRules",
          "target": [
            {
              "code": "MolecularSequence.implicitRules",
              "display": "MolecularSequence.implicitRules",
              "relationship": "equivalent",
              "comment": "Element `Sequence.implicitRules` is mapped to FHIR R5 element `MolecularSequence.implicitRules` as `Equivalent`.\nAsserting this rule set restricts the content to be only understood by a limited set of trading partners. This inherently limits the usefulness of the data in the long term. However, the existing health eco-system is highly fractured, and not yet ready to define, collect, and exchange data in a generally computable sense. Wherever possible, implementers and/or specification writers should avoid using this element. \n\nThis element is labelled as a modifier because the implicit rules may provide additional knowledge about the resource that modifies it's meaning or interpretation."
            }
          ]
        },
        {
          "code": "Sequence.language",
          "display": "language",
          "target": [
            {
              "code": "MolecularSequence.language",
              "display": "MolecularSequence.language",
              "relationship": "equivalent",
              "comment": "Element `Sequence.language` is mapped to FHIR R5 element `MolecularSequence.language` as `Equivalent`.\nLanguage is provided to support indexing and accessibility (typically, services such as text to speech use the language tag). The html language tag in the narrative applies  to the narrative. The language tag on the resource may be used to specify the language of other presentations generated from the data in the resource  Not all the content has to be in the base language. The Resource.language should not be assumed to apply to the narrative automatically. If a language is specified, it should it also be specified on the div element in the html (see rules in HTML5 for information about the relationship between xml:lang and the html lang attribute)."
            }
          ]
        },
        {
          "code": "Sequence.text",
          "display": "text",
          "target": [
            {
              "code": "MolecularSequence.text",
              "display": "MolecularSequence.text",
              "relationship": "source-is-broader-than-target",
              "comment": "Element `Sequence.text` is mapped to FHIR R5 element `MolecularSequence.text` as `SourceIsBroaderThanTarget`.\nThe mappings for `Sequence.text` do not cover the following types: Narrative.\nThe mappings for `Sequence.text` do not cover the following types based on type expansion: div, status.\nContained resources do not have narrative. Resources that are not contained SHOULD have a narrative. In some cases, a resource may only have text with little or no additional discrete data (as long as all minOccurs=1 elements are satisfied).  This may be necessary for data from legacy systems where information is captured as a \"text blob\" or where text is additionally entered raw or narrated and encoded in formation is added later."
            }
          ]
        },
        {
          "code": "Sequence.contained",
          "display": "contained",
          "target": [
            {
              "code": "MolecularSequence.contained",
              "display": "MolecularSequence.contained",
              "relationship": "equivalent",
              "comment": "Element `Sequence.contained` is mapped to FHIR R5 element `MolecularSequence.contained` as `SourceIsBroaderThanTarget`.\nThis should never be done when the content can be identified properly, as once identification is lost, it is extremely difficult (and context dependent) to restore it again."
            }
          ]
        },
        {
          "code": "Sequence.identifier",
          "display": "identifier",
          "target": [
            {
              "code": "MolecularSequence.identifier",
              "display": "MolecularSequence.identifier",
              "relationship": "source-is-broader-than-target",
              "comment": "Element `Sequence.identifier` is mapped to FHIR R5 element `MolecularSequence.identifier` as `SourceIsBroaderThanTarget`.\nThe mappings for `Sequence.identifier` do not cover the following types: Identifier.\nThe mappings for `Sequence.identifier` do not cover the following types based on type expansion: assigner, period, system, type, use, value."
            }
          ]
        },
        {
          "code": "Sequence.type",
          "display": "type",
          "target": [
            {
              "code": "MolecularSequence.type",
              "display": "MolecularSequence.type",
              "relationship": "equivalent",
              "comment": "Element `Sequence.type` is mapped to FHIR R5 element `MolecularSequence.type` as `Equivalent`."
            }
          ]
        },
        {
          "code": "Sequence.patient",
          "display": "patient",
          "target": [
            {
              "code": "MolecularSequence.subject",
              "display": "MolecularSequence.subject",
              "relationship": "source-is-broader-than-target",
              "comment": "Element `Sequence.patient` is mapped to FHIR R5 element `MolecularSequence.subject` as `SourceIsBroaderThanTarget`.\nThe mappings for `Sequence.patient` do not cover the following types based on type expansion: display, identifier, reference.\nThe standard extension `alternate-reference` has been mapped as the representation of FHIR STU3 element `Sequence.patient` with unmapped reference targets: Patient."
            }
          ]
        },
        {
          "code": "Sequence.specimen",
          "display": "specimen",
          "target": [
            {
              "code": "MolecularSequence.specimen",
              "display": "MolecularSequence.specimen",
              "relationship": "source-is-broader-than-target",
              "comment": "Element `Sequence.specimen` is mapped to FHIR R5 element `MolecularSequence.specimen` as `SourceIsBroaderThanTarget`.\nThe mappings for `Sequence.specimen` do not cover the following types based on type expansion: display, identifier, reference.\nThe standard extension `alternate-reference` has been mapped as the representation of FHIR STU3 element `Sequence.specimen` with unmapped reference targets: Specimen."
            }
          ]
        },
        {
          "code": "Sequence.device",
          "display": "device",
          "target": [
            {
              "code": "MolecularSequence.device",
              "display": "MolecularSequence.device",
              "relationship": "source-is-broader-than-target",
              "comment": "Element `Sequence.device` is mapped to FHIR R5 element `MolecularSequence.device` as `SourceIsBroaderThanTarget`.\nThe mappings for `Sequence.device` do not cover the following types based on type expansion: display, identifier, reference.\nThe standard extension `alternate-reference` has been mapped as the representation of FHIR STU3 element `Sequence.device` with unmapped reference targets: Device."
            }
          ]
        },
        {
          "code": "Sequence.performer",
          "display": "performer",
          "target": [
            {
              "code": "MolecularSequence.performer",
              "display": "MolecularSequence.performer",
              "relationship": "source-is-broader-than-target",
              "comment": "Element `Sequence.performer` is mapped to FHIR R5 element `MolecularSequence.performer` as `SourceIsBroaderThanTarget`.\nThe mappings for `Sequence.performer` do not cover the following types based on type expansion: display, identifier, reference.\nThe standard extension `alternate-reference` has been mapped as the representation of FHIR STU3 element `Sequence.performer` with unmapped reference targets: Organization."
            }
          ]
        },
        {
          "code": "Sequence.referenceSeq",
          "display": "referenceSeq",
          "target": [
            {
              "code": "MolecularSequence.relative",
              "display": "MolecularSequence.relative",
              "relationship": "related-to",
              "comment": "Element `Sequence.referenceSeq` is mapped to FHIR R5 element `MolecularSequence.relative` as `SourceIsNarrowerThanTarget`."
            }
          ]
        },
        {
          "code": "Sequence.referenceSeq.chromosome",
          "display": "chromosome",
          "target": [
            {
              "code": "MolecularSequence.relative.startingSequence.chromosome",
              "display": "MolecularSequence.relative.startingSequence.chromosome",
              "relationship": "equivalent",
              "comment": "Element `Sequence.referenceSeq.chromosome` is mapped to FHIR R5 element `MolecularSequence.relative.startingSequence.chromosome` as `Equivalent`."
            }
          ]
        },
        {
          "code": "Sequence.referenceSeq.strand",
          "display": "strand",
          "target": [
            {
              "code": "MolecularSequence.relative.startingSequence.strand",
              "display": "MolecularSequence.relative.startingSequence.strand",
              "relationship": "source-is-broader-than-target",
              "comment": "Element `Sequence.referenceSeq.strand` is mapped to FHIR R5 element `MolecularSequence.relative.startingSequence.strand` as `SourceIsBroaderThanTarget`.\nThe mappings for `Sequence.referenceSeq.strand` do not cover the following types: integer.\nThe mappings for `Sequence.referenceSeq.strand` do not cover the following types based on type expansion: value."
            }
          ]
        },
        {
          "code": "Sequence.variant",
          "display": "variant",
          "target": [
            {
              "code": "MolecularSequence.relative",
              "display": "MolecularSequence.relative",
              "relationship": "source-is-broader-than-target",
              "comment": "Element `Sequence.variant` is mapped to FHIR R5 element `MolecularSequence.relative` as `Equivalent`."
            }
          ]
        },
        {
          "code": "Sequence.variant.observedAllele",
          "display": "observedAllele",
          "target": [
            {
              "code": "MolecularSequence.relative.edit.replacementSequence",
              "display": "MolecularSequence.relative.edit.replacementSequence",
              "relationship": "equivalent",
              "comment": "Element `Sequence.variant.observedAllele` is mapped to FHIR R5 element `MolecularSequence.relative.edit.replacementSequence` as `Equivalent`."
            }
          ]
        },
        {
          "code": "Sequence.variant.referenceAllele",
          "display": "referenceAllele",
          "target": [
            {
              "code": "MolecularSequence.relative.edit.replacedSequence",
              "display": "MolecularSequence.relative.edit.replacedSequence",
              "relationship": "equivalent",
              "comment": "Element `Sequence.variant.referenceAllele` is mapped to FHIR R5 element `MolecularSequence.relative.edit.replacedSequence` as `Equivalent`."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.meta|0.1.0",
      "element": [
        {
          "code": "Sequence.meta",
          "display": "meta",
          "target": [
            {
              "code": "Extension",
              "relationship": "source-is-broader-than-target",
              "comment": "Element `Sequence.meta` is mapped to FHIR R5 element `MolecularSequence.meta` as `SourceIsBroaderThanTarget`.\nThe mappings for `Sequence.meta` do not cover the following types: Meta.\nThe mappings for `Sequence.meta` do not cover the following types based on type expansion: lastUpdated, profile, security, tag, versionId."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.text|0.1.0",
      "element": [
        {
          "code": "Sequence.text",
          "display": "text",
          "target": [
            {
              "code": "Extension",
              "relationship": "source-is-broader-than-target",
              "comment": "Element `Sequence.text` is mapped to FHIR R5 element `MolecularSequence.text` as `SourceIsBroaderThanTarget`.\nThe mappings for `Sequence.text` do not cover the following types: Narrative.\nThe mappings for `Sequence.text` do not cover the following types based on type expansion: div, status.\nContained resources do not have narrative. Resources that are not contained SHOULD have a narrative. In some cases, a resource may only have text with little or no additional discrete data (as long as all minOccurs=1 elements are satisfied).  This may be necessary for data from legacy systems where information is captured as a \"text blob\" or where text is additionally entered raw or narrated and encoded in formation is added later."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.identifier|0.1.0",
      "element": [
        {
          "code": "Sequence.identifier",
          "display": "identifier",
          "target": [
            {
              "code": "Extension",
              "relationship": "source-is-broader-than-target",
              "comment": "Element `Sequence.identifier` is mapped to FHIR R5 element `MolecularSequence.identifier` as `SourceIsBroaderThanTarget`.\nThe mappings for `Sequence.identifier` do not cover the following types: Identifier.\nThe mappings for `Sequence.identifier` do not cover the following types based on type expansion: assigner, period, system, type, use, value."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.coordinateSystem|0.1.0",
      "element": [
        {
          "code": "Sequence.coordinateSystem",
          "display": "coordinateSystem",
          "target": [
            {
              "code": "Extension",
              "relationship": "equivalent",
              "comment": "Element `Sequence.coordinateSystem` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.coordinateSystem` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.quantity|0.1.0",
      "element": [
        {
          "code": "Sequence.quantity",
          "display": "quantity",
          "target": [
            {
              "code": "Extension",
              "relationship": "equivalent",
              "comment": "Element `Sequence.quantity` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.quantity` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.referenceSeq.genomeBuild|0.1.0",
      "element": [
        {
          "code": "Sequence.referenceSeq.genomeBuild",
          "display": "genomeBuild",
          "target": [
            {
              "code": "Extension",
              "relationship": "equivalent",
              "comment": "Element `Sequence.referenceSeq.genomeBuild` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.referenceSeq.genomeBuild` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.referenceSeq.referenceSeqId|0.1.0",
      "element": [
        {
          "code": "Sequence.referenceSeq.referenceSeqId",
          "display": "referenceSeqId",
          "target": [
            {
              "code": "Extension",
              "relationship": "equivalent",
              "comment": "Element `Sequence.referenceSeq.referenceSeqId` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.referenceSeq.referenceSeqId` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.referenceSeq.referenceSeqPointer|0.1.0",
      "element": [
        {
          "code": "Sequence.referenceSeq.referenceSeqPointer",
          "display": "referenceSeqPointer",
          "target": [
            {
              "code": "Extension",
              "relationship": "equivalent",
              "comment": "Element `Sequence.referenceSeq.referenceSeqPointer` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.referenceSeq.referenceSeqPointer` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.referenceSeq.referenceSeqString|0.1.0",
      "element": [
        {
          "code": "Sequence.referenceSeq.referenceSeqString",
          "display": "referenceSeqString",
          "target": [
            {
              "code": "Extension",
              "relationship": "equivalent",
              "comment": "Element `Sequence.referenceSeq.referenceSeqString` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.referenceSeq.referenceSeqString` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.referenceSeq.strand|0.1.0",
      "element": [
        {
          "code": "Sequence.referenceSeq.strand",
          "display": "strand",
          "target": [
            {
              "code": "Extension",
              "relationship": "source-is-broader-than-target",
              "comment": "Element `Sequence.referenceSeq.strand` is mapped to FHIR R5 element `MolecularSequence.relative.startingSequence.strand` as `SourceIsBroaderThanTarget`.\nThe mappings for `Sequence.referenceSeq.strand` do not cover the following types: integer.\nThe mappings for `Sequence.referenceSeq.strand` do not cover the following types based on type expansion: value."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.referenceSeq.windowStart|0.1.0",
      "element": [
        {
          "code": "Sequence.referenceSeq.windowStart",
          "display": "windowStart",
          "target": [
            {
              "code": "Extension",
              "relationship": "equivalent",
              "comment": "Element `Sequence.referenceSeq.windowStart` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.referenceSeq.windowStart` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.referenceSeq.windowEnd|0.1.0",
      "element": [
        {
          "code": "Sequence.referenceSeq.windowEnd",
          "display": "windowEnd",
          "target": [
            {
              "code": "Extension",
              "relationship": "equivalent",
              "comment": "Element `Sequence.referenceSeq.windowEnd` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.referenceSeq.windowEnd` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.start|0.1.0",
      "element": [
        {
          "code": "Sequence.variant.start",
          "display": "start",
          "target": [
            {
              "code": "Extension",
              "relationship": "equivalent",
              "comment": "Element `Sequence.variant.start` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.variant.start` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.end|0.1.0",
      "element": [
        {
          "code": "Sequence.variant.end",
          "display": "end",
          "target": [
            {
              "code": "Extension",
              "relationship": "equivalent",
              "comment": "Element `Sequence.variant.end` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.variant.end` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.cigar|0.1.0",
      "element": [
        {
          "code": "Sequence.variant.cigar",
          "display": "cigar",
          "target": [
            {
              "code": "Extension",
              "relationship": "equivalent",
              "comment": "Element `Sequence.variant.cigar` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.variant.cigar` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.variantPointer|0.1.0",
      "element": [
        {
          "code": "Sequence.variant.variantPointer",
          "display": "variantPointer",
          "target": [
            {
              "code": "Extension",
              "relationship": "equivalent",
              "comment": "Element `Sequence.variant.variantPointer` has a context of MolecularSequence.relative based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.variant.variantPointer` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.observedSeq|0.1.0",
      "element": [
        {
          "code": "Sequence.observedSeq",
          "display": "observedSeq",
          "target": [
            {
              "code": "Extension",
              "relationship": "equivalent",
              "comment": "Element `Sequence.observedSeq` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.observedSeq` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.quality|0.1.0",
      "element": [
        {
          "code": "Sequence.quality",
          "display": "quality",
          "target": [
            {
              "code": "Extension",
              "relationship": "equivalent",
              "comment": "Element `Sequence.quality` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.quality` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.quality.type",
          "display": "type",
          "target": [
            {
              "code": "Extension.extension:type",
              "relationship": "equivalent",
              "comment": "Element `Sequence.quality.type` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension.\nElement `Sequence.quality.type` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.quality.type` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.quality.standardSequence",
          "display": "standardSequence",
          "target": [
            {
              "code": "Extension.extension:standardSequence",
              "relationship": "equivalent",
              "comment": "Element `Sequence.quality.standardSequence` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension.\nElement `Sequence.quality.standardSequence` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.quality.standardSequence` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.quality.start",
          "display": "start",
          "target": [
            {
              "code": "Extension.extension:start",
              "relationship": "equivalent",
              "comment": "Element `Sequence.quality.start` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension.\nElement `Sequence.quality.start` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.quality.start` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.quality.end",
          "display": "end",
          "target": [
            {
              "code": "Extension.extension:end",
              "relationship": "equivalent",
              "comment": "Element `Sequence.quality.end` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension.\nElement `Sequence.quality.end` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.quality.end` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.quality.score",
          "display": "score",
          "target": [
            {
              "code": "Extension.extension:score",
              "relationship": "equivalent",
              "comment": "Element `Sequence.quality.score` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension.\nElement `Sequence.quality.score` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.quality.score` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.quality.method",
          "display": "method",
          "target": [
            {
              "code": "Extension.extension:method",
              "relationship": "equivalent",
              "comment": "Element `Sequence.quality.method` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension.\nElement `Sequence.quality.method` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.quality.method` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.quality.truthTP",
          "display": "truthTP",
          "target": [
            {
              "code": "Extension.extension:truthTP",
              "relationship": "equivalent",
              "comment": "Element `Sequence.quality.truthTP` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension.\nElement `Sequence.quality.truthTP` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.quality.truthTP` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.quality.queryTP",
          "display": "queryTP",
          "target": [
            {
              "code": "Extension.extension:queryTP",
              "relationship": "equivalent",
              "comment": "Element `Sequence.quality.queryTP` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension.\nElement `Sequence.quality.queryTP` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.quality.queryTP` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.quality.truthFN",
          "display": "truthFN",
          "target": [
            {
              "code": "Extension.extension:truthFN",
              "relationship": "equivalent",
              "comment": "Element `Sequence.quality.truthFN` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension.\nElement `Sequence.quality.truthFN` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.quality.truthFN` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.quality.queryFP",
          "display": "queryFP",
          "target": [
            {
              "code": "Extension.extension:queryFP",
              "relationship": "equivalent",
              "comment": "Element `Sequence.quality.queryFP` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension.\nElement `Sequence.quality.queryFP` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.quality.queryFP` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.quality.gtFP",
          "display": "gtFP",
          "target": [
            {
              "code": "Extension.extension:gtFP",
              "relationship": "equivalent",
              "comment": "Element `Sequence.quality.gtFP` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension.\nElement `Sequence.quality.gtFP` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.quality.gtFP` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.quality.precision",
          "display": "precision",
          "target": [
            {
              "code": "Extension.extension:precision",
              "relationship": "equivalent",
              "comment": "Element `Sequence.quality.precision` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension.\nElement `Sequence.quality.precision` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.quality.precision` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.quality.recall",
          "display": "recall",
          "target": [
            {
              "code": "Extension.extension:recall",
              "relationship": "equivalent",
              "comment": "Element `Sequence.quality.recall` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension.\nElement `Sequence.quality.recall` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.quality.recall` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.quality.fScore",
          "display": "fScore",
          "target": [
            {
              "code": "Extension.extension:fScore",
              "relationship": "equivalent",
              "comment": "Element `Sequence.quality.fScore` is part of an existing definition because parent element `Sequence.quality` requires a cross-version extension.\nElement `Sequence.quality.fScore` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.quality.fScore` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.readCoverage|0.1.0",
      "element": [
        {
          "code": "Sequence.readCoverage",
          "display": "readCoverage",
          "target": [
            {
              "code": "Extension",
              "relationship": "equivalent",
              "comment": "Element `Sequence.readCoverage` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.readCoverage` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.repository|0.1.0",
      "element": [
        {
          "code": "Sequence.repository",
          "display": "repository",
          "target": [
            {
              "code": "Extension",
              "relationship": "equivalent",
              "comment": "Element `Sequence.repository` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.repository` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.repository.type",
          "display": "type",
          "target": [
            {
              "code": "Extension.extension:type",
              "relationship": "equivalent",
              "comment": "Element `Sequence.repository.type` is part of an existing definition because parent element `Sequence.repository` requires a cross-version extension.\nElement `Sequence.repository.type` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.repository.type` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.repository.url",
          "display": "url",
          "target": [
            {
              "code": "Extension.extension:url",
              "relationship": "equivalent",
              "comment": "Element `Sequence.repository.url` is part of an existing definition because parent element `Sequence.repository` requires a cross-version extension.\nElement `Sequence.repository.url` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.repository.url` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.repository.name",
          "display": "name",
          "target": [
            {
              "code": "Extension.extension:name",
              "relationship": "equivalent",
              "comment": "Element `Sequence.repository.name` is part of an existing definition because parent element `Sequence.repository` requires a cross-version extension.\nElement `Sequence.repository.name` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.repository.name` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.repository.datasetId",
          "display": "datasetId",
          "target": [
            {
              "code": "Extension.extension:datasetId",
              "relationship": "equivalent",
              "comment": "Element `Sequence.repository.datasetId` is part of an existing definition because parent element `Sequence.repository` requires a cross-version extension.\nElement `Sequence.repository.datasetId` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.repository.datasetId` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.repository.variantsetId",
          "display": "variantsetId",
          "target": [
            {
              "code": "Extension.extension:variantsetId",
              "relationship": "equivalent",
              "comment": "Element `Sequence.repository.variantsetId` is part of an existing definition because parent element `Sequence.repository` requires a cross-version extension.\nElement `Sequence.repository.variantsetId` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.repository.variantsetId` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        },
        {
          "code": "Sequence.repository.readsetId",
          "display": "readsetId",
          "target": [
            {
              "code": "Extension.extension:readsetId",
              "relationship": "equivalent",
              "comment": "Element `Sequence.repository.readsetId` is part of an existing definition because parent element `Sequence.repository` requires a cross-version extension.\nElement `Sequence.repository.readsetId` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.repository.readsetId` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        }
      ]
    },
    {
      "source": "http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2",
      "target": "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.pointer|0.1.0",
      "element": [
        {
          "code": "Sequence.pointer",
          "display": "pointer",
          "target": [
            {
              "code": "Extension",
              "relationship": "equivalent",
              "comment": "Element `Sequence.pointer` has a context of MolecularSequence based on following the parent source element upwards and mapping to `MolecularSequence`.\nElement `Sequence.pointer` has no mapping targets in FHIR R5. Typically, this is because the element has been added (is a new element)."
            }
          ]
        }
      ]
    }
  ]
}