| Package | hl7.fhir.uv.xver |
| Type | StructureMap |
| Id | Sequence3to4 |
| FHIR Version | R5 |
| Source | http://hl7.org/fhir/extensions/https://build.fhir.org/ig/HL7/fhir-cross-version/StructureMap-Sequence3to4.html |
| URL | http://hl7.org/fhir/StructureMap/Sequence3to4 |
| Version | 0.1.0 |
| Status | active |
| Date | 2024-02-22T03:16:50+00:00 |
| Name | Sequence3to4 |
| Title | Sequence Transforms: R3 to R4 |
| Realm | uv |
| Authority | hl7 |
| Description | SequenceTransformsR3toR4 |
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/// url = 'http://hl7.org/fhir/StructureMap/Sequence3to4' /// name = 'Sequence3to4' /// title = 'Sequence Transforms: R3 to R4' /// status = 'active' uses "http://hl7.org/fhir/3.0/Sequence" alias SequenceR3 as source uses "http://hl7.org/fhir/4.0/MolecularSequence" alias MolecularSequence as target imports "http://hl7.org/fhir/StructureMap/*3to4" group Sequence(source src : SequenceR3, target tgt : MolecularSequence) extends DomainResource <<type+>> { src.identifier -> tgt.identifier; src.type -> tgt.type; src.coordinateSystem -> tgt.coordinateSystem; src.patient -> tgt.patient; src.specimen -> tgt.specimen; src.device -> tgt.device; src.performer -> tgt.performer; src.quantity -> tgt.quantity; src.referenceSeq as vs0 -> tgt.referenceSeq as vt0 then referenceSeq(vs0, vt0); src.variant as vs0 -> tgt.variant as vt0 then variant(vs0, vt0); src.observedSeq -> tgt.observedSeq; src.quality as vs0 -> tgt.quality as vt0 then quality(vs0, vt0); src.readCoverage -> tgt.readCoverage; src.repository as vs0 -> tgt.repository as vt0 then repository(vs0, vt0); src.pointer -> tgt.pointer; } group referenceSeq(source src, target tgt) extends BackboneElement { src.chromosome -> tgt.chromosome; src.genomeBuild -> tgt.genomeBuild; src.referenceSeqId -> tgt.referenceSeqId; src.referenceSeqPointer -> tgt.referenceSeqPointer; src.referenceSeqString -> tgt.referenceSeqString; src.strand where value = 1 -> tgt.strand = 'watson'; src.strand where value = ( - 1) -> tgt.strand = 'crick'; src.windowStart -> tgt.windowStart; src.windowEnd -> tgt.windowEnd; } group variant(source src, target tgt) extends BackboneElement { src.start -> tgt.start; src.end -> tgt.end; src.observedAllele -> tgt.observedAllele; src.referenceAllele -> tgt.referenceAllele; src.cigar -> tgt.cigar; src.variantPointer -> tgt.variantPointer; } group quality(source src, target tgt) extends BackboneElement { src.type -> tgt.type; src.standardSequence -> tgt.standardSequence; src.start -> tgt.start; src.end -> tgt.end; src.score -> tgt.score; src.method -> tgt.method; src.truthTP -> tgt.truthTP; src.queryTP -> tgt.queryTP; src.truthFN -> tgt.truthFN; src.queryFP -> tgt.queryFP; src.gtFP -> tgt.gtFP; src.precision -> tgt.precision; src.recall -> tgt.recall; src.fScore -> tgt.fScore; } group repository(source src, target tgt) extends BackboneElement { src.type -> tgt.type; src.url -> tgt.url; src.name -> tgt.name; src.datasetId -> tgt.datasetId; src.variantsetId -> tgt.variantsetId; src.readsetId -> tgt.readsetId; }
FHIR{
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"id": "Sequence3to4",
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"div": "<!-- snip (see above) -->"
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"url": "http://hl7.org/fhir/StructureMap/Sequence3to4",
"version": "0.1.0",
"name": "Sequence3to4",
"title": "Sequence Transforms: R3 to R4",
"status": "active",
"date": "2024-02-22T03:16:50+00:00",
"publisher": "HL7 International / FHIR Infrastructure",
"contact": [
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],
"description": "SequenceTransformsR3toR4",
"jurisdiction": [
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"coding": [
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"code": "001"
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{
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],
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{
"name": "specimen",
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"variable": "vvv"
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],
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"context": "tgt",
"element": "specimen",
"variable": "vvv",
"transform": "create"
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{
"name": "device",
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"context": "tgt",
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{
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"source": [
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"variable": "vvv"
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"context": "tgt",
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{
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"context": "tgt",
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"variable": "vvv",
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{
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{
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"variable": "vvv"
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],
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{
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"condition": "value = 1"
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"valueString": "watson"
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},
{
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"condition": "value = ( - 1)"
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],
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{
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"variable": "vvv"
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{
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{
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{
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}
]
},
{
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],
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"parameter": [
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]
},
{
"name": "score",
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"variable": "vvv"
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],
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{
"context": "tgt",
"element": "score",
"variable": "vvv",
"transform": "create"
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{
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{
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{
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}
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}
]
},
{
"name": "method",
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{
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}
],
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