| Package | hl7.fhir.uv.xver |
| Resource Type | StructureMap |
| Id | MolecularSequence4to5 |
| FHIR Version | R5 |
| Source | http://hl7.org/fhir/extensions/https://build.fhir.org/ig/HL7/fhir-cross-version/StructureMap-MolecularSequence4to5.html |
| URL | http://hl7.org/fhir/StructureMap/MolecularSequence4to5 |
| Version | 0.1.0 |
| Status | active |
| Date | 2024-02-22T03:16:50+00:00 |
| Name | MolecularSequence4to5 |
| Title | MolecularSequence Transforms: R4 to R5 |
| Realm | uv |
| Authority | hl7 |
| Description | MolecularSequenceTransformsR4toR5 |
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/// url = 'http://hl7.org/fhir/StructureMap/MolecularSequence4to5' /// name = 'MolecularSequence4to5' /// title = 'MolecularSequence Transforms: R4 to R5' /// status = 'active' uses "http://hl7.org/fhir/4.0/MolecularSequence" alias MolecularSequenceR4 as source uses "http://hl7.org/fhir/5.0/MolecularSequence" alias MolecularSequenceR5 as target imports "http://hl7.org/fhir/StructureMap/*4to5" group MolecularSequence(source src : MolecularSequenceR4, target tgt : MolecularSequenceR5) extends DomainResource <<type+>> { src.identifier -> tgt.identifier; src.type as v -> tgt.type = translate(v, 'http://hl7.org/fhir/ConceptMap/MolecularSequence.type-R4toR5', 'code'); src.patient -> tgt.subject; src.specimen -> tgt.specimen; src.device -> tgt.device; src.performer -> tgt.performer; src.referenceSeq as s -> tgt.relative as t then MolecularSequenceReferenceSeq(s, t); src.variant as s -> tgt.relative as t then MolecularSequenceVariant(s, t); } group MolecularSequenceReferenceSeq(source src, target tgt) extends BackboneElement { src.chromosome as s where code = '1' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21254-0', tcc.display = 'Chromosome 1'; src.chromosome as s where code = '2' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21255-7', tcc.display = 'Chromosome 2'; src.chromosome as s where code = '3' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21256-5', tcc.display = 'Chromosome 3'; src.chromosome as s where code = '4' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21257-3', tcc.display = 'Chromosome 4'; src.chromosome as s where code = '5' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21258-1', tcc.display = 'Chromosome 5'; src.chromosome as s where code = '6' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21259-9', tcc.display = 'Chromosome 6'; src.chromosome as s where code = '7' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21260-7', tcc.display = 'Chromosome 7'; src.chromosome as s where code = '8' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21261-5', tcc.display = 'Chromosome 8'; src.chromosome as s where code = '9' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21262-3', tcc.display = 'Chromosome 9'; src.chromosome as s where code = '10' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21263-1', tcc.display = 'Chromosome 10'; src.chromosome as s where code = '11' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21264-9', tcc.display = 'Chromosome 11'; src.chromosome as s where code = '12' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21265-6', tcc.display = 'Chromosome 12'; src.chromosome as s where code = '13' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21266-4', tcc.display = 'Chromosome 13'; src.chromosome as s where code = '14' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21267-2', tcc.display = 'Chromosome 14'; src.chromosome as s where code = '15' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21268-0', tcc.display = 'Chromosome 15'; src.chromosome as s where code = '16' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21269-8', tcc.display = 'Chromosome 16'; src.chromosome as s where code = '17' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21270-6', tcc.display = 'Chromosome 17'; src.chromosome as s where code = '18' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21271-4', tcc.display = 'Chromosome 18'; src.chromosome as s where code = '19' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21272-2', tcc.display = 'Chromosome 19'; src.chromosome as s where code = '20' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21273-0', tcc.display = 'Chromosome 20'; src.chromosome as s where code = '21' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21274-8', tcc.display = 'Chromosome 21'; src.chromosome as s where code = '22' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21275-5', tcc.display = 'Chromosome 22'; src.chromosome as s where code = 'X' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21276-3', tcc.display = 'Chromosome X'; src.chromosome as s where code = 'Y' -> tgt.startingSequence as t, t.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://loinc.org', tcc.code = 'LA21277-1', tcc.display = 'Chromosome Y'; src.referenceSeqId : CodeableConcept as s -> tgt.startingSequence as t, t.sequence = s; src.referenceSeqPointer : Reference as s -> tgt.startingSequence as t, t.sequence = s; src.referenceSeqString : string as s -> tgt.startingSequence as t, t.sequence = s; src.windowStart : integer as s -> tgt.startingSequence as t, t.windowStart = s; src.windowEnd : integer as s -> tgt.startingSequence as t, t.windowEnd = s; src.orientation as v -> tgt.startingSequence as t, t.orientation = translate(v, 'http://hl7.org/fhir/ConceptMap/MolecularSequence.referenceSeq.orientation-R4toR5', 'code'); src.strand as v -> tgt.startingSequence as t, t.strand = translate(v, 'http://hl7.org/fhir/ConceptMap/MolecularSequence.referenceSeq.strand-R4toR5', 'code'); } group MolecularSequenceVariant(source src, target tgt) extends BackboneElement { src.start : integer as s -> tgt.edit as t, t.start = s; src.end : integer as s -> tgt.edit as t, t.end = s; src.observedAllele as s -> tgt.edit as t, t.replacementSequence = s; src.referenceAllele as s -> tgt.edit as t, t.replacedSequence = s; }
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"url": "http://hl7.org/fhir/StructureMap/MolecularSequence4to5",
"version": "0.1.0",
"name": "MolecularSequence4to5",
"title": "MolecularSequence Transforms: R4 to R5",
"status": "active",
"date": "2024-02-22T03:16:50+00:00",
"publisher": "HL7 International / FHIR Infrastructure",
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{
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"transform": "copy",
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{
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]
},
{
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{
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},
{
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"transform": "copy",
"parameter": [
{
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]
},
{
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"element": "display",
"transform": "copy",
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"valueString": "Chromosome 4"
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]
}
]
},
{
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{
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{
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"transform": "copy",
"parameter": [
{
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},
{
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},
{
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"source": [
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],
"target": [
{
"context": "tgt",
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},
{
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"parameter": [
{
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},
{
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"variable": "tcc",
"transform": "create",
"parameter": [
{
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}
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},
{
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"element": "system",
"transform": "copy",
"parameter": [
{
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}
]
},
{
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"transform": "copy",
"parameter": [
{
"valueString": "LA21259-9"
}
]
},
{
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"element": "display",
"transform": "copy",
"parameter": [
{
"valueString": "Chromosome 6"
}
]
}
]
},
{
"name": "chromosome",
"source": [
{
"context": "src",
"element": "chromosome",
"variable": "s",
"condition": "code = '7'"
}
],
"target": [
{
"context": "tgt",
"element": "startingSequence",
"variable": "t"
},
{
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"transform": "create",
"parameter": [
{
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},
{
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{
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}
]
},
{
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"transform": "copy",
"parameter": [
{
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}
]
},
{
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"transform": "copy",
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{
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