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FHIR IG Statistics: CodeSystem/HtsFormat

Packagehl7.fhir.uv.phenomics-exchange
TypeCodeSystem
IdHtsFormat
FHIR VersionR4
Sourcehttp://hl7.org/fhir/uv/phenomics-exchange/https://build.fhir.org/ig/HL7/phenomics-exchange-ig/CodeSystem-HtsFormat.html
URLhttp://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/HtsFormat
Version0.1.0
Statusdraft
Date2020-02-14T16:13:10+10:00
NameHtsFormat
TitleHTS Format
Realmuv
Authorityhl7
DescriptionAn enumeration used to represent different high-throughput sequencing file formats.
Copyright[Global Alliance for Genomics and Health](https://www.ga4gh.org)
Contentcomplete

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Narrative

Note: links and images are rebased to the (stated) source

This case-sensitive code system http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/HtsFormat defines the following codes:

CodeDisplay
UNKNOWN Unknown
SAM SAM
BAM BAM
CRAM CRAM
VCF VCF
BCF BCF
GVCF GVCF

Source

{
  "resourceType": "CodeSystem",
  "id": "HtsFormat",
  "meta": {
    "profile": [
      "http://hl7.org/fhir/StructureDefinition/shareablecodesystem"
    ]
  },
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
      "valueCode": "cic"
    }
  ],
  "url": "http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/HtsFormat",
  "version": "0.1.0",
  "name": "HtsFormat",
  "title": "HTS Format",
  "status": "draft",
  "experimental": false,
  "date": "2020-02-14T16:13:10+10:00",
  "publisher": "HL7 International / Clinical Interoperability Council",
  "contact": [
    {
      "name": "HL7 International / Clinical Interoperability Council",
      "telecom": [
        {
          "system": "url",
          "value": "http://www.hl7.org/Special/committees/cic"
        },
        {
          "system": "email",
          "value": "cic@lists.HL7.org"
        }
      ]
    }
  ],
  "description": "An enumeration used to represent different high-throughput sequencing file formats.",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
          "code": "001",
          "display": "World"
        }
      ]
    }
  ],
  "copyright": "[Global Alliance for Genomics and Health](https://www.ga4gh.org)",
  "caseSensitive": true,
  "content": "complete",
  "count": 7,
  "concept": [
    {
      "code": "UNKNOWN",
      "display": "Unknown"
    },
    {
      "code": "SAM",
      "display": "SAM"
    },
    {
      "code": "BAM",
      "display": "BAM"
    },
    {
      "code": "CRAM",
      "display": "CRAM"
    },
    {
      "code": "VCF",
      "display": "VCF"
    },
    {
      "code": "BCF",
      "display": "BCF"
    },
    {
      "code": "GVCF",
      "display": "GVCF"
    }
  ]
}