| Package | hl7.fhir.uv.phenomics-exchange |
| Resource Type | CodeSystem |
| Id | HtsFormat |
| FHIR Version | R4 |
| Source | http://hl7.org/fhir/uv/phenomics-exchange/https://build.fhir.org/ig/HL7/phenomics-exchange-ig/CodeSystem-HtsFormat.html |
| URL | http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/HtsFormat |
| Version | 0.1.0 |
| Status | draft |
| Date | 2020-02-14T16:13:10+10:00 |
| Name | HtsFormat |
| Title | HTS Format |
| Realm | uv |
| Authority | hl7 |
| Description | An enumeration used to represent different high-throughput sequencing file formats. |
| Copyright | [Global Alliance for Genomics and Health](https://www.ga4gh.org) |
| Content | complete |
No resources found
No resources found
Note: links and images are rebased to the (stated) source
This case-sensitive code system http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/HtsFormat defines the following codes:
| Code | Display |
| UNKNOWN | Unknown |
| SAM | SAM |
| BAM | BAM |
| CRAM | CRAM |
| VCF | VCF |
| BCF | BCF |
| GVCF | GVCF |
{
"resourceType": "CodeSystem",
"id": "HtsFormat",
"meta": {
"profile": [
"http://hl7.org/fhir/StructureDefinition/shareablecodesystem"
]
},
"text": {
"status": "generated",
"div": "<!-- snip (see above) -->"
},
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode": "cic"
}
],
"url": "http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/HtsFormat",
"version": "0.1.0",
"name": "HtsFormat",
"title": "HTS Format",
"status": "draft",
"experimental": false,
"date": "2020-02-14T16:13:10+10:00",
"publisher": "HL7 International / Clinical Interoperability Council",
"contact": [
{
"name": "HL7 International / Clinical Interoperability Council",
"telecom": [
{
"system": "url",
"value": "http://www.hl7.org/Special/committees/cic"
},
{
"system": "email",
"value": "cic@lists.HL7.org"
}
]
}
],
"description": "An enumeration used to represent different high-throughput sequencing file formats.",
"jurisdiction": [
{
"coding": [
{
"system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code": "001",
"display": "World"
}
]
}
],
"copyright": "[Global Alliance for Genomics and Health](https://www.ga4gh.org)",
"caseSensitive": true,
"content": "complete",
"count": 7,
"concept": [
{
"code": "UNKNOWN",
"display": "Unknown"
},
{
"code": "SAM",
"display": "SAM"
},
{
"code": "BAM",
"display": "BAM"
},
{
"code": "CRAM",
"display": "CRAM"
},
{
"code": "VCF",
"display": "VCF"
},
{
"code": "BCF",
"display": "BCF"
},
{
"code": "GVCF",
"display": "GVCF"
}
]
}