Package | hl7.fhir.uv.phenomics-exchange |
Type | CodeSystem |
Id | HtsFormat |
FHIR Version | R4 |
Source | http://hl7.org/fhir/uv/phenomics-exchange/https://build.fhir.org/ig/HL7/phenomics-exchange-ig/CodeSystem-HtsFormat.html |
URL | http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/HtsFormat |
Version | 0.1.0 |
Status | draft |
Date | 2020-02-14T16:13:10+10:00 |
Name | HtsFormat |
Title | HTS Format |
Realm | uv |
Authority | hl7 |
Description | An enumeration used to represent different high-throughput sequencing file formats. |
Copyright | [Global Alliance for Genomics and Health](https://www.ga4gh.org) |
Content | complete |
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Note: links and images are rebased to the (stated) source
This case-sensitive code system http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/HtsFormat
defines the following codes:
Code | Display |
UNKNOWN | Unknown |
SAM | SAM |
BAM | BAM |
CRAM | CRAM |
VCF | VCF |
BCF | BCF |
GVCF | GVCF |
{ "resourceType": "CodeSystem", "id": "HtsFormat", "meta": { "profile": [ "http://hl7.org/fhir/StructureDefinition/shareablecodesystem" ] }, "text": { "status": "generated", "div": "<!-- snip (see above) -->" }, "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg", "valueCode": "cic" } ], "url": "http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/HtsFormat", "version": "0.1.0", "name": "HtsFormat", "title": "HTS Format", "status": "draft", "experimental": false, "date": "2020-02-14T16:13:10+10:00", "publisher": "HL7 International / Clinical Interoperability Council", "contact": [ { "name": "HL7 International / Clinical Interoperability Council", "telecom": [ { "system": "url", "value": "http://www.hl7.org/Special/committees/cic" }, { "system": "email", "value": "cic@lists.HL7.org" } ] } ], "description": "An enumeration used to represent different high-throughput sequencing file formats.", "jurisdiction": [ { "coding": [ { "system": "http://unstats.un.org/unsd/methods/m49/m49.htm", "code": "001", "display": "World" } ] } ], "copyright": "[Global Alliance for Genomics and Health](https://www.ga4gh.org)", "caseSensitive": true, "content": "complete", "count": 7, "concept": [ { "code": "UNKNOWN", "display": "Unknown" }, { "code": "SAM", "display": "SAM" }, { "code": "BAM", "display": "BAM" }, { "code": "CRAM", "display": "CRAM" }, { "code": "VCF", "display": "VCF" }, { "code": "BCF", "display": "BCF" }, { "code": "GVCF", "display": "GVCF" } ] }