| Package | hl7.fhir.uv.omop |
| Resource Type | StructureMap |
| Id | MedicationMap |
| FHIR Version | R5 |
| Source | http://hl7.org/fhir/uv/omop/https://build.fhir.org/ig/HL7/fhir-omop-ig/StructureMap-MedicationMap.html |
| URL | http://hl7.org/fhir/uv/omop/StructureMap/MedicationMap |
| Version | 1.0.0-ballot |
| Status | draft |
| Date | 2025-07-29T17:40:15+00:00 |
| Name | MedicationMap |
| Title | Mapping MedicationStatement resource to DrugExposure OMOP Domain |
| Realm | uv |
| Authority | hl7 |
| Description | This mapping maps FHIR MedicationStatement instances to OMOP Drug Exposure Table objects. NOTE: It does not map FHIR MedicationRequest instances although there is a discussion of those instances in the notes. |
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Note: links and images are rebased to the (stated) source
Generated Narrative: StructureMap MedicationMap
/// url = 'http://hl7.org/fhir/uv/omop/StructureMap/MedicationMap' /// name = 'MedicationMap' /// title = 'Mapping MedicationStatement resource to DrugExposure OMOP Domain' /// status = 'draft' uses "http://hl7.org/fhir/StructureDefinition/MedicationStatement" alias MedState as source uses "http://hl7.org/fhir/uv/omop/StructureDefinition/DrugExposure" alias DrugExpTable as target group MedExposure(source src : MedState, target tgt : DrugExpTable) { src.medication : CodeableReference as s -> tgt then { s.concept as scs -> tgt then { scs.coding as sc -> tgt then { sc.code as a -> tgt.drug_concept_id = a; }; }; }; // src.id as id -> tgt.drug_exposure_id = cast(id, "integer"); src.effective : dateTime as edt -> tgt.drug_exposure_start_datetime = edt, tgt.drug_exposure_start_date = cast(edt, 'date'); src.effective : Period as s -> tgt then { s.start as fps -> tgt.drug_exposure_start_datetime = fps, tgt.drug_exposure_start_date = cast(fps, 'date'); }; src.effective : Period as s -> tgt then { s.end as fpe -> tgt.drug_exposure_end_datetime = fpe, tgt.drug_exposure_end_date = cast(fps, 'date'); }; src.effective : Period as s -> tgt then { s.end as fpe -> tgt.verbatim_end_date = cast(fps, 'date'); }; src.category : CodeableConcept as s -> tgt then { s.coding as sc -> tgt then { sc.code as a -> tgt.drug_type_concept_id = a; }; }; src.reason : CodeableReference as s -> tgt then { s.concept as scs -> tgt then { scs.coding as sc -> tgt then { sc.code as a -> tgt.stop_reason = a; }; }; }; }
FHIR{
"resourceType": "StructureMap",
"id": "MedicationMap",
"text": {
"status": "generated",
"div": "<!-- snip (see above) -->"
},
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode": "brr"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
"valueInteger": 1,
"_valueInteger": {
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueCanonical": "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"
}
]
}
},
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
"valueCode": "informative",
"_valueCode": {
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueCanonical": "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"
}
]
}
}
],
"url": "http://hl7.org/fhir/uv/omop/StructureMap/MedicationMap",
"version": "1.0.0-ballot",
"name": "MedicationMap",
"title": "Mapping MedicationStatement resource to DrugExposure OMOP Domain",
"status": "draft",
"date": "2025-07-29T17:40:15+00:00",
"publisher": "HL7 International / Biomedical Research and Regulation",
"contact": [
{
"name": "HL7 International / Biomedical Research and Regulation",
"telecom": [
{
"system": "url",
"value": "http://www.hl7.org/Special/committees/rcrim"
}
]
}
],
"description": "This mapping maps FHIR MedicationStatement instances to OMOP Drug Exposure Table objects. NOTE: It does not map FHIR MedicationRequest instances although there is a discussion of those instances in the notes.",
"jurisdiction": [
{
"coding": [
{
"system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code": "001",
"display": "World"
}
]
}
],
"structure": [
{
"url": "http://hl7.org/fhir/StructureDefinition/MedicationStatement",
"mode": "source",
"alias": "MedState"
},
{
"url": "http://hl7.org/fhir/uv/omop/StructureDefinition/DrugExposure",
"mode": "target",
"alias": "DrugExpTable"
}
],
"group": [
{
"name": "MedExposure",
"input": [
{
"name": "src",
"type": "MedState",
"mode": "source"
},
{
"name": "tgt",
"type": "DrugExpTable",
"mode": "target"
}
],
"rule": [
{
"name": "medicationCodeableReference",
"source": [
{
"context": "src",
"type": "CodeableReference",
"element": "medication",
"variable": "s"
}
],
"target": [
{
"transform": "copy",
"parameter": [
{
"valueId": "tgt"
}
]
}
],
"rule": [
{
"name": "concept",
"source": [
{
"context": "s",
"element": "concept",
"variable": "scs"
}
],
"target": [
{
"transform": "copy",
"parameter": [
{
"valueId": "tgt"
}
]
}
],
"rule": [
{
"name": "coding",
"source": [
{
"context": "scs",
"element": "coding",
"variable": "sc"
}
],
"target": [
{
"transform": "copy",
"parameter": [
{
"valueId": "tgt"
}
]
}
],
"rule": [
{
"name": "code",
"source": [
{
"context": "sc",
"element": "code",
"variable": "a"
}
],
"target": [
{
"context": "tgt",
"element": "drug_concept_id",
"transform": "copy",
"parameter": [
{
"valueId": "a"
}
]
}
]
}
]
}
]
}
],
"documentation": "src.id as id -> tgt.drug_exposure_id = cast(id, \"integer\");"
},
{
"name": "effectiveDateTime",
"source": [
{
"context": "src",
"type": "dateTime",
"element": "effective",
"variable": "edt"
}
],
"target": [
{
"context": "tgt",
"element": "drug_exposure_start_datetime",
"transform": "copy",
"parameter": [
{
"valueId": "edt"
}
]
},
{
"context": "tgt",
"element": "drug_exposure_start_date",
"transform": "cast",
"parameter": [
{
"valueId": "edt"
},
{
"valueString": "date"
}
]
}
]
},
{
"name": "effectivePeriod",
"source": [
{
"context": "src",
"type": "Period",
"element": "effective",
"variable": "s"
}
],
"target": [
{
"transform": "copy",
"parameter": [
{
"valueId": "tgt"
}
]
}
],
"rule": [
{
"name": "start",
"source": [
{
"context": "s",
"element": "start",
"variable": "fps"
}
],
"target": [
{
"context": "tgt",
"element": "drug_exposure_start_datetime",
"transform": "copy",
"parameter": [
{
"valueId": "fps"
}
]
},
{
"context": "tgt",
"element": "drug_exposure_start_date",
"transform": "cast",
"parameter": [
{
"valueId": "fps"
},
{
"valueString": "date"
}
]
}
]
}
]
},
{
"name": "effectivePeriod",
"source": [
{
"context": "src",
"type": "Period",
"element": "effective",
"variable": "s"
}
],
"target": [
{
"transform": "copy",
"parameter": [
{
"valueId": "tgt"
}
]
}
],
"rule": [
{
"name": "end",
"source": [
{
"context": "s",
"element": "end",
"variable": "fpe"
}
],
"target": [
{
"context": "tgt",
"element": "drug_exposure_end_datetime",
"transform": "copy",
"parameter": [
{
"valueId": "fpe"
}
]
},
{
"context": "tgt",
"element": "drug_exposure_end_date",
"transform": "cast",
"parameter": [
{
"valueId": "fps"
},
{
"valueString": "date"
}
]
}
]
}
]
},
{
"name": "effectivePeriod",
"source": [
{
"context": "src",
"type": "Period",
"element": "effective",
"variable": "s"
}
],
"target": [
{
"transform": "copy",
"parameter": [
{
"valueId": "tgt"
}
]
}
],
"rule": [
{
"name": "end",
"source": [
{
"context": "s",
"element": "end",
"variable": "fpe"
}
],
"target": [
{
"context": "tgt",
"element": "verbatim_end_date",
"transform": "cast",
"parameter": [
{
"valueId": "fps"
},
{
"valueString": "date"
}
]
}
]
}
]
},
{
"name": "categoryCodeableConcept",
"source": [
{
"context": "src",
"type": "CodeableConcept",
"element": "category",
"variable": "s"
}
],
"target": [
{
"transform": "copy",
"parameter": [
{
"valueId": "tgt"
}
]
}
],
"rule": [
{
"name": "coding",
"source": [
{
"context": "s",
"element": "coding",
"variable": "sc"
}
],
"target": [
{
"transform": "copy",
"parameter": [
{
"valueId": "tgt"
}
]
}
],
"rule": [
{
"name": "code",
"source": [
{
"context": "sc",
"element": "code",
"variable": "a"
}
],
"target": [
{
"context": "tgt",
"element": "drug_type_concept_id",
"transform": "copy",
"parameter": [
{
"valueId": "a"
}
]
}
]
}
]
}
]
},
{
"name": "reasonCodeableReference",
"source": [
{
"context": "src",
"type": "CodeableReference",
"element": "reason",
"variable": "s"
}
],
"target": [
{
"transform": "copy",
"parameter": [
{
"valueId": "tgt"
}
]
}
],
"rule": [
{
"name": "concept",
"source": [
{
"context": "s",
"element": "concept",
"variable": "scs"
}
],
"target": [
{
"transform": "copy",
"parameter": [
{
"valueId": "tgt"
}
]
}
],
"rule": [
{
"name": "coding",
"source": [
{
"context": "scs",
"element": "coding",
"variable": "sc"
}
],
"target": [
{
"transform": "copy",
"parameter": [
{
"valueId": "tgt"
}
]
}
],
"rule": [
{
"name": "code",
"source": [
{
"context": "sc",
"element": "code",
"variable": "a"
}
],
"target": [
{
"context": "tgt",
"element": "stop_reason",
"transform": "copy",
"parameter": [
{
"valueId": "a"
}
]
}
]
}
]
}
]
}
]
}
]
}
]
}