Package | hl7.fhir.uv.omop |
Type | StructureMap |
Id | MedicationMap |
FHIR Version | R5 |
Source | http://hl7.org/fhir/uv/omop/https://build.fhir.org/ig/HL7/fhir-omop-ig/StructureMap-MedicationMap.html |
URL | http://hl7.org/fhir/uv/omop/StructureMap/MedicationMap |
Version | 1.0.0-ballot |
Status | draft |
Date | 2025-07-22T19:48:02+00:00 |
Name | MedicationMap |
Title | Mapping MedicationStatement resource to DrugExposure OMOP Domain |
Realm | uv |
Authority | hl7 |
Description | This mapping maps FHIR MedicationStatement instances to OMOP Drug Exposure Table objects. NOTE: It does not map FHIR MedicationRequest instances although there is a discussion of those instances in the notes. |
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Generated Narrative: StructureMap MedicationMap
/// url = 'http://hl7.org/fhir/uv/omop/StructureMap/MedicationMap' /// name = 'MedicationMap' /// title = 'Mapping MedicationStatement resource to DrugExposure OMOP Domain' /// status = 'draft' uses "http://hl7.org/fhir/StructureDefinition/MedicationStatement" alias MedState as source uses "http://hl7.org/fhir/uv/omop/StructureDefinition/DrugExposure" alias DrugExpTable as target group MedExposure(source src : MedState, target tgt : DrugExpTable) { src.medication : CodeableReference as s -> tgt then { s.concept as scs -> tgt then { scs.coding as sc -> tgt then { sc.code as a -> tgt.drug_concept_id = a; }; }; }; // src.id as id -> tgt.drug_exposure_id = cast(id, "integer"); src.effective : dateTime as edt -> tgt.drug_exposure_start_datetime = edt, tgt.drug_exposure_start_date = cast(edt, 'date'); src.effective : Period as s -> tgt then { s.start as fps -> tgt.drug_exposure_start_datetime = fps, tgt.drug_exposure_start_date = cast(fps, 'date'); }; src.effective : Period as s -> tgt then { s.end as fpe -> tgt.drug_exposure_end_datetime = fpe, tgt.drug_exposure_end_date = cast(fps, 'date'); }; src.effective : Period as s -> tgt then { s.end as fpe -> tgt.verbatim_end_date = cast(fps, 'date'); }; src.category : CodeableConcept as s -> tgt then { s.coding as sc -> tgt then { sc.code as a -> tgt.drug_type_concept_id = a; }; }; src.reason : CodeableReference as s -> tgt then { s.concept as scs -> tgt then { scs.coding as sc -> tgt then { sc.code as a -> tgt.stop_reason = a; }; }; }; }
{ "resourceType": "StructureMap", "id": "MedicationMap", "text": { "status": "generated", "div": "<!-- snip (see above) -->" }, "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg", "valueCode": "brr" }, { "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm", "valueInteger": 1, "_valueInteger": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom", "valueCanonical": "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop" } ] } }, { "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status", "valueCode": "informative", "_valueCode": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom", "valueCanonical": "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop" } ] } } ], "url": "http://hl7.org/fhir/uv/omop/StructureMap/MedicationMap", "version": "1.0.0-ballot", "name": "MedicationMap", "title": "Mapping MedicationStatement resource to DrugExposure OMOP Domain", "status": "draft", "date": "2025-07-22T19:48:02+00:00", "publisher": "HL7 International / Biomedical Research and Regulation", "contact": [ { "name": "HL7 International / Biomedical Research and Regulation", "telecom": [ { "system": "url", "value": "http://www.hl7.org/Special/committees/rcrim" } ] } ], "description": "This mapping maps FHIR MedicationStatement instances to OMOP Drug Exposure Table objects. NOTE: It does not map FHIR MedicationRequest instances although there is a discussion of those instances in the notes.", "jurisdiction": [ { "coding": [ { "system": "http://unstats.un.org/unsd/methods/m49/m49.htm", "code": "001", "display": "World" } ] } ], "structure": [ { "url": "http://hl7.org/fhir/StructureDefinition/MedicationStatement", "mode": "source", "alias": "MedState" }, { "url": "http://hl7.org/fhir/uv/omop/StructureDefinition/DrugExposure", "mode": "target", "alias": "DrugExpTable" } ], "group": [ { "name": "MedExposure", "input": [ { "name": "src", "type": "MedState", "mode": "source" }, { "name": "tgt", "type": "DrugExpTable", "mode": "target" } ], "rule": [ { "name": "medicationCodeableReference", "source": [ { "context": "src", "type": "CodeableReference", "element": "medication", "variable": "s" } ], "target": [ { "transform": "copy", "parameter": [ { "valueId": "tgt" } ] } ], "rule": [ { "name": "concept", "source": [ { "context": "s", "element": "concept", "variable": "scs" } ], "target": [ { "transform": "copy", "parameter": [ { "valueId": "tgt" } ] } ], "rule": [ { "name": "coding", "source": [ { "context": "scs", "element": "coding", "variable": "sc" } ], "target": [ { "transform": "copy", "parameter": [ { "valueId": "tgt" } ] } ], "rule": [ { "name": "code", "source": [ { "context": "sc", "element": "code", "variable": "a" } ], "target": [ { "context": "tgt", "element": "drug_concept_id", "transform": "copy", "parameter": [ { "valueId": "a" } ] } ] } ] } ] } ], "documentation": "src.id as id -> tgt.drug_exposure_id = cast(id, \"integer\");" }, { "name": "effectiveDateTime", "source": [ { "context": "src", "type": "dateTime", "element": "effective", "variable": "edt" } ], "target": [ { "context": "tgt", "element": "drug_exposure_start_datetime", "transform": "copy", "parameter": [ { "valueId": "edt" } ] }, { "context": "tgt", "element": "drug_exposure_start_date", "transform": "cast", "parameter": [ { "valueId": "edt" }, { "valueString": "date" } ] } ] }, { "name": "effectivePeriod", "source": [ { "context": "src", "type": "Period", "element": "effective", "variable": "s" } ], "target": [ { "transform": "copy", "parameter": [ { "valueId": "tgt" } ] } ], "rule": [ { "name": "start", "source": [ { "context": "s", "element": "start", "variable": "fps" } ], "target": [ { "context": "tgt", "element": "drug_exposure_start_datetime", "transform": "copy", "parameter": [ { "valueId": "fps" } ] }, { "context": "tgt", "element": "drug_exposure_start_date", "transform": "cast", "parameter": [ { "valueId": "fps" }, { "valueString": "date" } ] } ] } ] }, { "name": "effectivePeriod", "source": [ { "context": "src", "type": "Period", "element": "effective", "variable": "s" } ], "target": [ { "transform": "copy", "parameter": [ { "valueId": "tgt" } ] } ], "rule": [ { "name": "end", "source": [ { "context": "s", "element": "end", "variable": "fpe" } ], "target": [ { "context": "tgt", "element": "drug_exposure_end_datetime", "transform": "copy", "parameter": [ { "valueId": "fpe" } ] }, { "context": "tgt", "element": "drug_exposure_end_date", "transform": "cast", "parameter": [ { "valueId": "fps" }, { "valueString": "date" } ] } ] } ] }, { "name": "effectivePeriod", "source": [ { "context": "src", "type": "Period", "element": "effective", "variable": "s" } ], "target": [ { "transform": "copy", "parameter": [ { "valueId": "tgt" } ] } ], "rule": [ { "name": "end", "source": [ { "context": "s", "element": "end", "variable": "fpe" } ], "target": [ { "context": "tgt", "element": "verbatim_end_date", "transform": "cast", "parameter": [ { "valueId": "fps" }, { "valueString": "date" } ] } ] } ] }, { "name": "categoryCodeableConcept", "source": [ { "context": "src", "type": "CodeableConcept", "element": "category", "variable": "s" } ], "target": [ { "transform": "copy", "parameter": [ { "valueId": "tgt" } ] } ], "rule": [ { "name": "coding", "source": [ { "context": "s", "element": "coding", "variable": "sc" } ], "target": [ { "transform": "copy", "parameter": [ { "valueId": "tgt" } ] } ], "rule": [ { "name": "code", "source": [ { "context": "sc", "element": "code", "variable": "a" } ], "target": [ { "context": "tgt", "element": "drug_type_concept_id", "transform": "copy", "parameter": [ { "valueId": "a" } ] } ] } ] } ] }, { "name": "reasonCodeableReference", "source": [ { "context": "src", "type": "CodeableReference", "element": "reason", "variable": "s" } ], "target": [ { "transform": "copy", "parameter": [ { "valueId": "tgt" } ] } ], "rule": [ { "name": "concept", "source": [ { "context": "s", "element": "concept", "variable": "scs" } ], "target": [ { "transform": "copy", "parameter": [ { "valueId": "tgt" } ] } ], "rule": [ { "name": "coding", "source": [ { "context": "scs", "element": "coding", "variable": "sc" } ], "target": [ { "transform": "copy", "parameter": [ { "valueId": "tgt" } ] } ], "rule": [ { "name": "code", "source": [ { "context": "sc", "element": "code", "variable": "a" } ], "target": [ { "context": "tgt", "element": "stop_reason", "transform": "copy", "parameter": [ { "valueId": "a" } ] } ] } ] } ] } ] } ] } ] }