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Narrative

Note: links and images are rebased to the (stated) source

Source1

{
  "resourceType": "MolecularDefinition",
  "id": "example-sequence-fmr1-cgg-20x-edited-contained",
  "meta": {
    "profile": [
      "http://hl7.org/fhir/uv/molecular-definition-data-types/StructureDefinition/sequence"
    ]
  },
  "language": "en",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "contained": [
    {
      "resourceType": "MolecularDefinition",
      "id": "replacement",
      "meta": {
        "profile": [
          "http://hl7.org/fhir/uv/molecular-definition-data-types/StructureDefinition/sequence"
        ]
      },
      "moleculeType": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type",
            "code": "dna",
            "display": "DNA Sequence"
          }
        ]
      },
      "type": [
        {
          "coding": [
            {
              "system": "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type",
              "code": "dna",
              "display": "DNA Sequence"
            }
          ]
        }
      ],
      "representation": [
        {
          "literal": {
            "encoding": {
              "coding": [
                {
                  "system": "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/encodings",
                  "code": "nucleotide-dna-1letter-unambiguous"
                }
              ]
            },
            "value": "A"
          }
        }
      ]
    },
    {
      "resourceType": "MolecularDefinition",
      "id": "replaced",
      "meta": {
        "profile": [
          "http://hl7.org/fhir/uv/molecular-definition-data-types/StructureDefinition/sequence"
        ]
      },
      "moleculeType": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type",
            "code": "dna",
            "display": "DNA Sequence"
          }
        ]
      },
      "type": [
        {
          "coding": [
            {
              "system": "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type",
              "code": "dna",
              "display": "DNA Sequence"
            }
          ]
        }
      ],
      "representation": [
        {
          "literal": {
            "encoding": {
              "coding": [
                {
                  "system": "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/encodings",
                  "code": "nucleotide-dna-1letter-unambiguous"
                }
              ]
            },
            "value": "C"
          }
        }
      ]
    }
  ],
  "moleculeType": {
    "coding": [
      {
        "system": "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type",
        "code": "dna",
        "display": "DNA Sequence"
      }
    ]
  },
  "type": [
    {
      "coding": [
        {
          "system": "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type",
          "code": "dna",
          "display": "DNA Sequence"
        }
      ]
    }
  ],
  "representation": [
    {
      "relative": {
        "startingMolecule": {
          "reference": "MolecularDefinition/example-sequence-fmr1-cgg-20x-repeat",
          "type": "MolecularDefinition",
          "display": "CGG 20X"
        },
        "edit": [
          {
            "coordinateInterval": {
              "coordinateSystem": {
                "system": {
                  "coding": [
                    {
                      "system": "http://loinc.org",
                      "code": "LA30102-0",
                      "display": "1-based character counting"
                    }
                  ]
                }
              }
            },
            "replacementMolecule": {
              "reference": "#replacement",
              "type": "MolecularDefinition",
              "display": "A"
            },
            "replacedMolecule": {
              "reference": "#replaced",
              "type": "MolecularDefinition",
              "display": "C"
            }
          }
        ]
      }
    }
  ]
}