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Narrative

Note: links and images are rebased to the (stated) source

Source1

{
  "resourceType": "MolecularDefinition",
  "id": "example-allelesliced-cyp2c19-1b-1016g",
  "meta": {
    "profile": [
      "http://hl7.org/fhir/uv/molecular-definition-data-types/StructureDefinition/allele"
    ]
  },
  "language": "en",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "moleculeType": {
    "coding": [
      {
        "system": "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type",
        "code": "rna",
        "display": "RNA Sequence"
      }
    ]
  },
  "type": [
    {
      "coding": [
        {
          "system": "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecule-type",
          "code": "rna",
          "display": "RNA Sequence"
        }
      ]
    }
  ],
  "location": [
    {
      "sequenceLocation": {
        "sequenceContext": {
          "reference": "MolecularDefinition/example-sequence-nm0007694-url",
          "type": "MolecularDefinition",
          "display": "Starting Sequence Resource: (CYP2C19), mRNA, NM_000769.4"
        },
        "coordinateInterval": {
          "coordinateSystem": {
            "system": {
              "coding": [
                {
                  "system": "http://loinc.org",
                  "code": "LA30102-0",
                  "display": "1-based character counting"
                }
              ]
            }
          },
          "startQuantity": {
            "value": 1016
          },
          "endQuantity": {
            "value": 1016
          }
        }
      }
    }
  ],
  "representation": [
    {
      "focus": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus",
            "code": "allele-state",
            "display": "Allele State"
          }
        ]
      },
      "code": [
        {
          "coding": [
            {
              "system": "http://www.pharmvar.org",
              "code": "PV00076",
              "display": "CYP2C19*1.002"
            }
          ]
        }
      ],
      "literal": {
        "value": "G"
      }
    },
    {
      "focus": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus",
            "code": "context-state",
            "display": "Context State"
          }
        ]
      },
      "literal": {
        "value": "A"
      }
    }
  ]
}