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FHIR IG analytics

Packagehl7.fhir.uv.genomics-reporting.r4b
Resource TypeProcedure
IdProcedure-lungMass.json
FHIR VersionR4B

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Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: Procedure lungMass

Genomic Study Analysis Extension: Procedure: extension = Sequence analysis of the entire coding region,Somatic,SNV,MNV,delins,GRCh38,->Specimen: identifier = http://www.somesystemabc.net/identifiers/specimens#4; status = available; type = Specimen from lung obtained by biopsy (specimen); receivedTime = 2019-03-01 01:01:01+0000,->John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117 (use: temp, period: 2021-01-01 --> (ongoing))),,,; instantiatesUri = https://pubmed.ncbi.nlm.nih.gov/33927380/; status = completed; category = Laboratory; performed[x] = 2019-03-01 01:01:10-0600; note = For technical reasons, PIK3CB was deemed uncallable using this method.

Genomic Study Analysis Extension: Procedure: extension = Deletion/duplication analysis,Somatic,CNV,GRCh38,->Specimen: identifier = http://www.somesystemabc.net/identifiers/specimens#4; status = available; type = Specimen from lung obtained by biopsy (specimen); receivedTime = 2019-03-01 01:01:01+0000,->John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117 (use: temp, period: 2021-01-01 --> (ongoing))),,; instantiatesUri = https://pubmed.ncbi.nlm.nih.gov/33927380/; status = completed; category = Laboratory; performed[x] = 2019-03-01 01:01:10-0600; note = For technical reasons, PIK3CB was deemed uncallable using this method.

basedOn: ServiceRequest Molecular genetic test (procedure)

status: Completed

category: Laboratory

code: Solid tumor whole exome sequencing panel

subject: John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117 (use: temp, period: 2021-01-01 --> (ongoing)))

performed: 2019-03-01

asserter: Practitioner Jane Doel

reasonCode: Lung mass (finding)

note: For technical reasons, PIK3CB was deemed uncallable.

Source1

{
  "resourceType": "Procedure",
  "id": "lungMass",
  "meta": {
    "profile": [
      "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study"
    ]
  },
  "text": {
    "status": "extensions",
    "div": "<!-- snip (see above) -->"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext",
      "valueReference": {
        "reference": "Procedure/lungMass-analysis1"
      }
    },
    {
      "url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext",
      "valueReference": {
        "reference": "Procedure/lungMass-analysis2"
      }
    }
  ],
  "basedOn": [
    {
      "reference": "ServiceRequest/genomicServiceRequest"
    }
  ],
  "status": "completed",
  "category": {
    "coding": [
      {
        "system": "http://terminology.hl7.org/CodeSystem/observation-category",
        "code": "laboratory"
      }
    ]
  },
  "code": {
    "text": "Solid tumor whole exome sequencing panel"
  },
  "subject": {
    "reference": "Patient/genomicPatient"
  },
  "performedDateTime": "2019-03-01",
  "asserter": {
    "reference": "Practitioner/practitioner02"
  },
  "reasonCode": [
    {
      "coding": [
        {
          "system": "http://snomed.info/sct",
          "code": "309529002",
          "display": "Lung mass (finding)"
        }
      ]
    }
  ],
  "note": [
    {
      "text": "For technical reasons, PIK3CB was deemed uncallable."
    }
  ]
}