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FHIR IG analytics

Packagehl7.fhir.uv.genomics-reporting.r4b
Resource TypeObservation
IdObservation-HaplotypeExamplePharmVar01.json
FHIR VersionR4B

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Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: Observation HaplotypeExamplePharmVar01

status: Final

category: Laboratory, Genetics

code: Haplotype name

subject: Adam B. Everyman Male, DoB: 1951-01-20 ( Medical Record Number: m123 (use: usual, ))

effective: 2019-04-01

performer: Organization some lab

value: CYP2D6*7.001

specimen: Specimen: status = available; type = Tissue

Components

-CodeValue[x]
*Gene studied [ID]CYP2D6

Source1

{
  "resourceType": "Observation",
  "id": "HaplotypeExamplePharmVar01",
  "meta": {
    "profile": [
      "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype"
    ]
  },
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "status": "final",
  "category": [
    {
      "coding": [
        {
          "system": "http://terminology.hl7.org/CodeSystem/observation-category",
          "code": "laboratory"
        }
      ]
    },
    {
      "coding": [
        {
          "system": "http://terminology.hl7.org/CodeSystem/v2-0074",
          "code": "GE"
        }
      ]
    }
  ],
  "code": {
    "coding": [
      {
        "system": "http://loinc.org",
        "code": "84414-2"
      }
    ]
  },
  "subject": {
    "reference": "Patient/CGPatientExample01"
  },
  "effectiveDateTime": "2019-04-01",
  "performer": [
    {
      "reference": "Organization/ExampleOrg"
    }
  ],
  "valueCodeableConcept": {
    "coding": [
      {
        "system": "http://www.pharmvar.org",
        "code": "PV00155",
        "display": "CYP2D6*7.001"
      }
    ]
  },
  "specimen": {
    "reference": "Specimen/GenomicSpecimenExample01"
  },
  "component": [
    {
      "code": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "48018-6"
          }
        ]
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://www.genenames.org",
            "code": "HGNC:2625",
            "display": "CYP2D6"
          }
        ]
      }
    }
  ]
}