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FHIR IG analytics

Packagehl7.fhir.uv.genomics-reporting.r4
Resource TypeSpecimen
IdSpecimen-tumorSpecimen.json
FHIR VersionR4

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Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: Specimen tumorSpecimen

identifier: http://www.somesystemabc.net/identifiers/specimens/222333

status: Available

type: Specimen from lung obtained by biopsy (specimen)

subject: Hamsburg, Substance Jr

receivedTime: 2023-01-23 01:01:01+0000

Collections

-Collected[x]MethodBodySite
*2023-01-01 01:01:00+0000Biopsy - actionRight lung structure (body structure)

note: Tumor: 20%

Source1

{
  "resourceType": "Specimen",
  "id": "tumorSpecimen",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "identifier": [
    {
      "system": "http://www.somesystemabc.net/identifiers/specimens",
      "value": "222333"
    }
  ],
  "status": "available",
  "type": {
    "coding": [
      {
        "system": "http://snomed.info/sct",
        "code": "122610009",
        "display": "Specimen from lung obtained by biopsy (specimen)"
      }
    ]
  },
  "subject": {
    "reference": "Patient/somaticPatient",
    "display": "Hamsburg, Substance Jr"
  },
  "receivedTime": "2023-01-23T01:01:01Z",
  "collection": {
    "collectedDateTime": "2023-01-01T01:01:00Z",
    "method": {
      "coding": [
        {
          "system": "http://snomed.info/sct",
          "code": "129314006",
          "display": "Biopsy - action"
        }
      ]
    },
    "bodySite": {
      "coding": [
        {
          "system": "http://snomed.info/sct",
          "code": "3341006",
          "display": "Right lung structure (body structure)"
        }
      ]
    }
  },
  "note": [
    {
      "text": "Tumor: 20%"
    }
  ]
}