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FHIR IG analytics

Packagehl7.fhir.uv.genomics-reporting.r4
Resource TypeProcedure
IdProcedure-PGXGenomicStudyAnalysis.json
FHIR VersionR4

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Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: Procedure PGXGenomicStudyAnalysis

Genomic Study Analysis Genome Build: GRCh38

Genomic Study Analysis Metrics

  • sequencing-coverage: 100

Genomic Study Analysis Regions

  • description: protein-coding and exon-splicing regions
  • studied: CYP2C19
  • studied: CYP2C9
  • studied: VKORC1

status: Completed

category: Laboratory

subject: Adam B. Everyman Male, DoB: 1951-01-20 ( Medical Record Number: m123 (use: usual, ))

performed: 2021-01-01 01:01:10-0600

Source1

{
  "resourceType": "Procedure",
  "id": "PGXGenomicStudyAnalysis",
  "meta": {
    "profile": [
      "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis"
    ]
  },
  "text": {
    "status": "extensions",
    "div": "<!-- snip (see above) -->"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-genome-build",
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "LA26806-2",
            "display": "GRCh38"
          }
        ]
      }
    },
    {
      "extension": [
        {
          "url": "sequencing-coverage",
          "valueQuantity": {
            "value": 100
          }
        }
      ],
      "url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-metrics"
    },
    {
      "extension": [
        {
          "url": "description",
          "valueString": "protein-coding and exon-splicing regions"
        },
        {
          "url": "studied",
          "valueCodeableConcept": {
            "coding": [
              {
                "system": "http://www.genenames.org",
                "code": "HGNC:2621",
                "display": "CYP2C19"
              }
            ]
          }
        },
        {
          "url": "studied",
          "valueCodeableConcept": {
            "coding": [
              {
                "system": "http://www.genenames.org",
                "code": "HGNC:2623",
                "display": "CYP2C9"
              }
            ]
          }
        },
        {
          "url": "studied",
          "valueCodeableConcept": {
            "coding": [
              {
                "system": "http://www.genenames.org",
                "code": "HGNC:23663",
                "display": "VKORC1"
              }
            ]
          }
        }
      ],
      "url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-regions"
    }
  ],
  "status": "completed",
  "category": {
    "coding": [
      {
        "system": "http://terminology.hl7.org/CodeSystem/observation-category",
        "code": "laboratory"
      }
    ]
  },
  "subject": {
    "reference": "Patient/CGPatientExample01"
  },
  "performedDateTime": "2021-01-01T01:01:10-06:00"
}