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Packagehl7.fhir.uv.genomics-reporting.r4
Resource TypeObservation
IdObservation-genotype-hla-a-glstring-r4.json
FHIR VersionR4

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Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: Observation genotype-hla-a-glstring-r4

status: Final

category: Laboratory, Genetics

code: Genotype display name

subject: Anonymous Patient (no stated gender), DoB Unknown

effective: 2018-07-26

performer: aTypingLab, Inc

value: hla#3.31.0#HLA-A*03:01:01:01+HLA-A*30:01:01

method: PACBIO Sequel

specimen: Specimen: identifier = http://specimensrus.com#001^123456789; type = Buccal smear sample; receivedTime = 2018-05-01

derivedFrom: Observation Haplotype name

Components

-CodeValue[x]
*Gene studied [ID]HLA-A

Source1

{
  "resourceType": "Observation",
  "id": "genotype-hla-a-glstring-r4",
  "meta": {
    "profile": [
      "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype"
    ]
  },
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "status": "final",
  "category": [
    {
      "coding": [
        {
          "system": "http://terminology.hl7.org/CodeSystem/observation-category",
          "code": "laboratory"
        }
      ]
    },
    {
      "coding": [
        {
          "system": "http://terminology.hl7.org/CodeSystem/v2-0074",
          "code": "GE"
        }
      ]
    }
  ],
  "code": {
    "coding": [
      {
        "system": "http://loinc.org",
        "code": "84413-4",
        "display": "Genotype display name"
      },
      {
        "system": "http://loinc.org",
        "code": "57290-9",
        "display": "HLA-A [Type] by High resolution"
      }
    ]
  },
  "subject": {
    "reference": "Patient/ExamplePatient"
  },
  "effectiveDateTime": "2018-07-26",
  "performer": [
    {
      "type": "Organization",
      "display": "aTypingLab, Inc"
    }
  ],
  "valueCodeableConcept": {
    "coding": [
      {
        "system": "http://glstring.org",
        "version": "1.0",
        "code": "hla#3.31.0#HLA-A*03:01:01:01+HLA-A*30:01:01"
      }
    ]
  },
  "method": {
    "text": "PACBIO Sequel"
  },
  "specimen": {
    "reference": "Specimen/specimen-hla-r4"
  },
  "derivedFrom": [
    {
      "reference": "Observation/haplotype-hla-a-1-r4"
    }
  ],
  "component": [
    {
      "code": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "48018-6",
            "display": "Gene studied [ID]"
          }
        ]
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://www.genenames.org",
            "code": "HGNC:4931",
            "display": "HLA-A"
          }
        ]
      }
    }
  ]
}