FHIR IG analytics| Package | hl7.fhir.uv.genomics-reporting.r4 |
| Resource Type | Observation |
| Id | Observation-Pgx-geno-1001.json |
| FHIR Version | R4 |
No resources found
No resources found
Note: links and images are rebased to the (stated) source
Generated Narrative: Observation Pgx-geno-1001
status: Final
category: Laboratory, Genetics
code: Genotype display name
subject: Adam B. Everyman Male, DoB: 1951-01-20 ( Medical Record Number: m123 (use: usual, ))
effective: 2019-04-01
performer: Organization some lab
value: CYP2C19*2/*2
specimen: Specimen: status = available; type = Tissue
derivedFrom:
| Code | Value[x] |
| Gene studied [ID] | CYP2C19 |
{
"resourceType": "Observation",
"id": "Pgx-geno-1001",
"meta": {
"profile": [
"http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype"
]
},
"text": {
"status": "generated",
"div": "<!-- snip (see above) -->"
},
"status": "final",
"category": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/observation-category",
"code": "laboratory"
}
]
},
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v2-0074",
"code": "GE"
}
]
}
],
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "84413-4"
}
]
},
"subject": {
"reference": "Patient/CGPatientExample01"
},
"effectiveDateTime": "2019-04-01",
"performer": [
{
"reference": "Organization/ExampleOrg"
}
],
"valueCodeableConcept": {
"coding": [
{
"system": "http://www.ncbi.nlm.nih.gov/clinvar",
"code": "638797",
"display": "CYP2C19*2/*2"
}
]
},
"specimen": {
"reference": "Specimen/GenomicSpecimenExample01"
},
"derivedFrom": [
{
"reference": "Observation/Pgx-var-1011"
},
{
"reference": "Observation/Pgx-var-1012"
},
{
"reference": "Observation/Pgx-var-1013"
},
{
"reference": "Observation/Pgx-var-1014"
},
{
"reference": "Observation/Pgx-var-1015"
},
{
"reference": "Observation/Pgx-var-1016"
},
{
"reference": "Observation/Pgx-var-1017"
},
{
"reference": "Observation/Pgx-var-1018"
}
],
"component": [
{
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "48018-6"
}
]
},
"valueCodeableConcept": {
"coding": [
{
"system": "http://www.genenames.org",
"code": "HGNC:2621",
"display": "CYP2C19"
}
]
}
}
]
}