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Narrative

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Source1

{
  "resourceType": "CodeSystem",
  "id": "variant-confidence-status-cs",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
      "valueCode": "cg"
    }
  ],
  "url": "http://terminology.hl7.org/CodeSystem/variant-confidence-status-cs",
  "version": "3.0.0",
  "name": "VariantConfidenceStatusCS",
  "title": "Variant Confidence Status Codes",
  "status": "active",
  "experimental": true,
  "date": "2024-12-12T21:16:09+00:00",
  "publisher": "HL7 International / Clinical Genomics",
  "contact": [
    {
      "name": "HL7 International / Clinical Genomics",
      "telecom": [
        {
          "system": "url",
          "value": "http://www.hl7.org/Special/committees/clingenomics"
        },
        {
          "system": "email",
          "value": "cg@lists.HL7.org"
        }
      ]
    }
  ],
  "description": "A code that represents the confidence of a true positive variant call.",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
          "code": "001",
          "display": "World"
        }
      ]
    }
  ],
  "caseSensitive": true,
  "content": "complete",
  "count": 3,
  "concept": [
    {
      "code": "high",
      "display": "High",
      "definition": "High confidence true positive variant call. Suitable for clinical reporting."
    },
    {
      "code": "intermediate",
      "display": "Intermediate",
      "definition": "Candidate true positive variant call. Unable to confirm without additional testing."
    },
    {
      "code": "low",
      "display": "Low",
      "definition": "High confidence false positive variant call."
    }
  ]
}