FHIR IG analytics| Package | hl7.fhir.uv.genomics-reporting.r4 |
| Resource Type | Bundle |
| Id | validation-oo.json |
| FHIR Version | R4 |
No resources found
No resources found
No narrative content found in resource
FHIR
FHIRsmith{
"resourceType": "Bundle",
"type": "collection",
"timestamp": "2024-12-12T21:26:44.587+00:00",
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"valueInteger": 881
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[16].resource/*Observation/CG-IG-HLA-FullBundle-01-17*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 845
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/gtr' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[16].resource/*Observation/CG-IG-HLA-FullBundle-01-17*/.method.coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 881
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[16].resource/*Observation/CG-IG-HLA-FullBundle-01-17*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 881
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[16].resource/*Observation/CG-IG-HLA-FullBundle-01-17*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 948
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.23' could not be found, so the code cannot be validated. Valid versions: []"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[17].resource/*Observation/CG-IG-HLA-FullBundle-01-18*/.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 958
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/gtr' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[17].resource/*Observation/CG-IG-HLA-FullBundle-01-18*/.method.coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 994
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[17].resource/*Observation/CG-IG-HLA-FullBundle-01-18*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 958
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/gtr' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[17].resource/*Observation/CG-IG-HLA-FullBundle-01-18*/.method.coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 994
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[17].resource/*Observation/CG-IG-HLA-FullBundle-01-18*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 994
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[17].resource/*Observation/CG-IG-HLA-FullBundle-01-18*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1068
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://glstring.org' version '1.0' could not be found, so the code cannot be validated. Valid versions: []"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[18].resource/*Observation/CG-IG-HLA-FullBundle-01-19*/.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1077
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/gtr' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[18].resource/*Observation/CG-IG-HLA-FullBundle-01-19*/.method.coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1113
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[18].resource/*Observation/CG-IG-HLA-FullBundle-01-19*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1113
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[18].resource/*Observation/CG-IG-HLA-FullBundle-01-19*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1113
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[18].resource/*Observation/CG-IG-HLA-FullBundle-01-19*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1138
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 12
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.23' could not be found, so the code cannot be validated. Valid versions: []"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[19].resource/*MolecularSequence/CG-IG-HLA-FullBundle-01-20*/.referenceSeq.referenceSeqId.coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1166
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 12
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.23' could not be found, so the code cannot be validated. Valid versions: []"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[20].resource/*MolecularSequence/CG-IG-HLA-FullBundle-01-21*/.referenceSeq.referenceSeqId.coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1194
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 12
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.23' could not be found, so the code cannot be validated. Valid versions: []"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[21].resource/*MolecularSequence/CG-IG-HLA-FullBundle-01-22*/.referenceSeq.referenceSeqId.coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1222
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 12
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.23' could not be found, so the code cannot be validated. Valid versions: []"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[22].resource/*MolecularSequence/CG-IG-HLA-FullBundle-01-23*/.referenceSeq.referenceSeqId.coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1292
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.23' could not be found, so the code cannot be validated. Valid versions: []"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[23].resource/*Observation/CG-IG-HLA-FullBundle-01-24*/.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1302
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/gtr' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[23].resource/*Observation/CG-IG-HLA-FullBundle-01-24*/.method.coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1338
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[23].resource/*Observation/CG-IG-HLA-FullBundle-01-24*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1302
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/gtr' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[23].resource/*Observation/CG-IG-HLA-FullBundle-01-24*/.method.coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1338
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[23].resource/*Observation/CG-IG-HLA-FullBundle-01-24*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1338
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[23].resource/*Observation/CG-IG-HLA-FullBundle-01-24*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1405
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.23' could not be found, so the code cannot be validated. Valid versions: []"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[24].resource/*Observation/CG-IG-HLA-FullBundle-01-25*/.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1415
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/gtr' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[24].resource/*Observation/CG-IG-HLA-FullBundle-01-25*/.method.coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1451
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[24].resource/*Observation/CG-IG-HLA-FullBundle-01-25*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1415
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/gtr' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[24].resource/*Observation/CG-IG-HLA-FullBundle-01-25*/.method.coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1451
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[24].resource/*Observation/CG-IG-HLA-FullBundle-01-25*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1451
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[24].resource/*Observation/CG-IG-HLA-FullBundle-01-25*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1525
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://glstring.org' version '1.0' could not be found, so the code cannot be validated. Valid versions: []"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[25].resource/*Observation/CG-IG-HLA-FullBundle-01-26*/.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1534
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/gtr' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[25].resource/*Observation/CG-IG-HLA-FullBundle-01-26*/.method.coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1570
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[25].resource/*Observation/CG-IG-HLA-FullBundle-01-26*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1570
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[25].resource/*Observation/CG-IG-HLA-FullBundle-01-26*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1570
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[25].resource/*Observation/CG-IG-HLA-FullBundle-01-26*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1625
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.23' could not be found, so the code cannot be validated. Valid versions: []"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[26].resource/*DiagnosticReport/CG-IG-HLA-FullBundle-01-27*/.extension[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1597
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[26].resource/*DiagnosticReport/CG-IG-HLA-FullBundle-01-27*/.code.coding[1].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Bundle-bundle-CYP2C19",
"resource": {
"resourceType": "OperationOutcome",
"id": "Bundle-bundle-CYP2C19",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 94
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[0].resource/*Observation/dv-5c7e9e1ca62b5*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 276
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[1].resource/*Observation/dv-5c7e9e1ca6342*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 458
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[2].resource/*Observation/dv-5c7e9e1ca63bf*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 640
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[3].resource/*Observation/dv-5c7e9e1ca643a*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 822
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[4].resource/*Observation/dv-5c7e9e1ca64b5*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1004
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[5].resource/*Observation/dv-5c7e9e1ca6531*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1186
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[6].resource/*Observation/dv-5c7e9e1ca65ac*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1368
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[7].resource/*Observation/dv-5c7e9e1ca6627*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1550
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[8].resource/*Observation/dv-5c7e9e1ca66a1*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1732
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[9].resource/*Observation/dv-5c7e9e1ca671c*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1914
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[10].resource/*Observation/dv-5c7e9e1ca6797*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2096
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[11].resource/*Observation/dv-5c7e9e1ca6812*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2278
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[12].resource/*Observation/dv-5c7e9e1ca688c*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2460
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[13].resource/*Observation/dv-5c7e9e1ca6922*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2642
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[14].resource/*Observation/dv-5c7e9e1ca69a3*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2824
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[15].resource/*Observation/dv-5c7e9e1ca6a1d*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 3006
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[16].resource/*Observation/dv-5c7e9e1ca6a97*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 3188
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[17].resource/*Observation/dv-5c7e9e1ca6b11*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 3370
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-CYP2C19: Bundle.entry[18].resource/*Observation/dv-5c7e9e1ca6b86*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
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{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 326
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[5].resource/*Observation/discrete-variant-1a*/.component[5].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 253
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[5].resource/*Observation/discrete-variant-1a*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 253
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[5].resource/*Observation/discrete-variant-1a*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 646
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[6].resource/*Observation/dis-path-1a*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 893
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[9].resource/*Observation/complex-component-D-1a*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 912
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[9].resource/*Observation/complex-component-D-1a*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1050
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[10].resource/*Observation/complex-component-E-1a*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1069
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[10].resource/*Observation/complex-component-E-1a*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1107
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id",
"valueCode": "Reference_REF_MultipleMatches"
}
],
"severity": "warning",
"code": "structure",
"details": {
"text": "Found multiple matching profiles for Task/usage-1a among choices: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/followup-recommendation|3.0.0, http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/medication-recommendation|3.0.0"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[11].resource/*Observation/pharmPanel-1a*/.extension[0].value.ofType(Reference)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1213
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[12].resource/*Observation/haplotype-1a*/.value.ofType(CodeableConcept).coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1278
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[13].resource/*Observation/genotype-1a*/.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1305
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[13].resource/*Observation/genotype-1a*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1324
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[13].resource/*Observation/genotype-1a*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1278
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[13].resource.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1305
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[13].resource.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1305
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[13].resource.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1305
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[13].resource.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1324
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[13].resource.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1324
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[13].resource.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1324
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-cgexample-withGrouping: Bundle.entry[13].resource.component[1].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Bundle-bundle-cgexample",
"resource": {
"resourceType": "OperationOutcome",
"id": "Bundle-bundle-cgexample",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 230
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[5].resource/*Observation/discrete-variant*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 249
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[5].resource/*Observation/discrete-variant*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 268
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[5].resource/*Observation/discrete-variant*/.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 286
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[5].resource/*Observation/discrete-variant*/.component[3].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 322
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' version '137' could not be found, so the code cannot be validated. Valid versions: []"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[5].resource/*Observation/discrete-variant*/.component[5].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 249
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[5].resource/*Observation/discrete-variant*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 249
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[5].resource/*Observation/discrete-variant*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 671
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[6].resource/*Observation/dis-path*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 918
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[9].resource/*Observation/complex-component-D*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 937
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[9].resource/*Observation/complex-component-D*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1075
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' version '???' could not be found, so the code cannot be validated. Valid versions: []"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[10].resource/*Observation/complex-component-E*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1095
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[10].resource/*Observation/complex-component-E*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1172
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[11].resource/*Observation/haplotype*/.value.ofType(CodeableConcept).coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1237
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[12].resource/*Observation/genotype*/.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1264
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[12].resource/*Observation/genotype*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1283
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[12].resource/*Observation/genotype*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1264
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[12].resource/*Observation/genotype*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1264
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[12].resource/*Observation/genotype*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1283
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[12].resource/*Observation/genotype*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1283
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-cgexample: Bundle.entry[12].resource/*Observation/genotype*/.component[1].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Bundle-bundle-complexVariant-nonHGVS",
"resource": {
"resourceType": "OperationOutcome",
"id": "Bundle-bundle-complexVariant-nonHGVS",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 74
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-complexVariant-nonHGVS: Bundle.entry[0].resource/*Observation/Inline-Instance-for-complexVariant-nonHGVS-1*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 221
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-complexVariant-nonHGVS: Bundle.entry[1].resource/*Observation/Inline-Instance-for-complexVariant-nonHGVS-2*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 347
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-complexVariant-nonHGVS: Bundle.entry[2].resource/*Observation/Inline-Instance-for-complexVariant-nonHGVS-3*/.value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Bundle-bundle-compound-heterozygote",
"resource": {
"resourceType": "OperationOutcome",
"id": "Bundle-bundle-compound-heterozygote",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 263
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-compound-heterozygote: Bundle.entry[2].resource/*Observation/Inline-Instance-for-compound-heterozygote-3*/.value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Bundle-bundle-oncology-diagnostic",
"resource": {
"resourceType": "OperationOutcome",
"id": "Bundle-bundle-oncology-diagnostic",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 304
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-diagnostic: Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-diagnostic-5*/.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 344
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-diagnostic: Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-diagnostic-5*/.component[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 344
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-diagnostic: Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-diagnostic-5*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 344
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-diagnostic: Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-diagnostic-5*/.component[4].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Bundle-bundle-oncology-report-example",
"resource": {
"resourceType": "OperationOutcome",
"id": "Bundle-bundle-oncology-report-example",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 188
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[3].resource/*Observation/Inline-Instance-for-oncology-report-example-4*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 248
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[3].resource/*Observation/Inline-Instance-for-oncology-report-example-4*/.component[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 288
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[3].resource/*Observation/Inline-Instance-for-oncology-report-example-4*/.component[6].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 188
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[3].resource/*Observation/Inline-Instance-for-oncology-report-example-4*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 188
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[3].resource/*Observation/Inline-Instance-for-oncology-report-example-4*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 248
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[3].resource/*Observation/Inline-Instance-for-oncology-report-example-4*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 248
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[3].resource/*Observation/Inline-Instance-for-oncology-report-example-4*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 453
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-report-example-5*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 513
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-report-example-5*/.component[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 533
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-report-example-5*/.component[5].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 453
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-report-example-5*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 453
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-report-example-5*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 513
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-report-example-5*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 513
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-report-example-5*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 698
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncology-report-example-6*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 758
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncology-report-example-6*/.component[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 798
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncology-report-example-6*/.component[6].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 698
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncology-report-example-6*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 698
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncology-report-example-6*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 758
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncology-report-example-6*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 758
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncology-report-example-6*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 963
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncology-report-example-7*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1023
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncology-report-example-7*/.component[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1043
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncology-report-example-7*/.component[5].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 963
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncology-report-example-7*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 963
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncology-report-example-7*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1023
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncology-report-example-7*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1023
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncology-report-example-7*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1208
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncology-report-example-8*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1268
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncology-report-example-8*/.component[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1288
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncology-report-example-8*/.component[5].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1208
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncology-report-example-8*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1208
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncology-report-example-8*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1268
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncology-report-example-8*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1268
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncology-report-example-8*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1453
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncology-report-example-9*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1513
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncology-report-example-9*/.component[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1533
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncology-report-example-9*/.component[5].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1453
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncology-report-example-9*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1453
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncology-report-example-9*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1513
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncology-report-example-9*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1513
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncology-report-example-9*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1698
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[9].resource/*Observation/Inline-Instance-for-oncology-report-example-10*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1757
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[9].resource/*Observation/Inline-Instance-for-oncology-report-example-10*/.component[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1796
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[9].resource/*Observation/Inline-Instance-for-oncology-report-example-10*/.component[6].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1698
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[9].resource/*Observation/Inline-Instance-for-oncology-report-example-10*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1698
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[9].resource/*Observation/Inline-Instance-for-oncology-report-example-10*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1757
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[9].resource/*Observation/Inline-Instance-for-oncology-report-example-10*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1757
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[9].resource/*Observation/Inline-Instance-for-oncology-report-example-10*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1961
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[10].resource/*Observation/Inline-Instance-for-oncology-report-example-11*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2020
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[10].resource/*Observation/Inline-Instance-for-oncology-report-example-11*/.component[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2059
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[10].resource/*Observation/Inline-Instance-for-oncology-report-example-11*/.component[6].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1961
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[10].resource/*Observation/Inline-Instance-for-oncology-report-example-11*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1961
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[10].resource/*Observation/Inline-Instance-for-oncology-report-example-11*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2020
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[10].resource/*Observation/Inline-Instance-for-oncology-report-example-11*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2020
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[10].resource/*Observation/Inline-Instance-for-oncology-report-example-11*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2224
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[11].resource/*Observation/Inline-Instance-for-oncology-report-example-12*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2283
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[11].resource/*Observation/Inline-Instance-for-oncology-report-example-12*/.component[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2322
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[11].resource/*Observation/Inline-Instance-for-oncology-report-example-12*/.component[6].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2224
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[11].resource/*Observation/Inline-Instance-for-oncology-report-example-12*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2224
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[11].resource/*Observation/Inline-Instance-for-oncology-report-example-12*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2283
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[11].resource/*Observation/Inline-Instance-for-oncology-report-example-12*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2283
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[11].resource/*Observation/Inline-Instance-for-oncology-report-example-12*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2487
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncology-report-example-13*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncology-report-example-13*/.component[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncology-report-example-13*/.component[5].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncology-report-example-13*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2487
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncology-report-example-13*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2546
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncology-report-example-13*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2546
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncology-report-example-13*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2731
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[13].resource/*Observation/Inline-Instance-for-oncology-report-example-14*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2790
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[13].resource/*Observation/Inline-Instance-for-oncology-report-example-14*/.component[4].value.ofType(CodeableConcept).coding[0].system"
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},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2810
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[13].resource/*Observation/Inline-Instance-for-oncology-report-example-14*/.component[5].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2731
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[13].resource/*Observation/Inline-Instance-for-oncology-report-example-14*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2731
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[13].resource/*Observation/Inline-Instance-for-oncology-report-example-14*/.component[1].value.ofType(CodeableConcept)"
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},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2790
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[13].resource/*Observation/Inline-Instance-for-oncology-report-example-14*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2790
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[13].resource/*Observation/Inline-Instance-for-oncology-report-example-14*/.component[4].value.ofType(CodeableConcept)"
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},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2975
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[14].resource/*Observation/Inline-Instance-for-oncology-report-example-15*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 3034
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[14].resource/*Observation/Inline-Instance-for-oncology-report-example-15*/.component[4].value.ofType(CodeableConcept).coding[0].system"
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},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[14].resource/*Observation/Inline-Instance-for-oncology-report-example-15*/.component[6].value.ofType(CodeableConcept).coding[0].system"
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},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2975
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[14].resource/*Observation/Inline-Instance-for-oncology-report-example-15*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 2975
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[14].resource/*Observation/Inline-Instance-for-oncology-report-example-15*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 3034
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[14].resource/*Observation/Inline-Instance-for-oncology-report-example-15*/.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 3034
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Bundle/bundle-oncology-report-example: Bundle.entry[14].resource/*Observation/Inline-Instance-for-oncology-report-example-15*/.component[4].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Bundle-bundle-oncologyexamples-r4-withGrouping",
"resource": {
"resourceType": "OperationOutcome",
"id": "Bundle-bundle-oncologyexamples-r4-withGrouping",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 418
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-6*/.component[3].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 418
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-6*/.component[3].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-6*/.component[3].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 573
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-7*/.component[3].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 573
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-7*/.component[3].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 573
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-7*/.component[3].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 708
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-8*/.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 708
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-8*/.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 708
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-8*/.component[2].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Bundle-bundle-oncologyexamples-r4",
"resource": {
"resourceType": "OperationOutcome",
"id": "Bundle-bundle-oncologyexamples-r4",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 418
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncologyexamples-r4: Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-6*/.component[3].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 418
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncologyexamples-r4: Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-6*/.component[3].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 418
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncologyexamples-r4: Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-6*/.component[3].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 573
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncologyexamples-r4: Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-7*/.component[3].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 573
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncologyexamples-r4: Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-7*/.component[3].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 573
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncologyexamples-r4: Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-7*/.component[3].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 708
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-oncologyexamples-r4: Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-8*/.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 708
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncologyexamples-r4: Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-8*/.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 708
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-oncologyexamples-r4: Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-8*/.component[2].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Bundle-bundle-pgxexample",
"resource": {
"resourceType": "OperationOutcome",
"id": "Bundle-bundle-pgxexample",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 37
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id",
"valueCode": "Reference_REF_MultipleMatches"
}
],
"severity": "warning",
"code": "structure",
"details": {
"text": "Found multiple matching profiles for Task/med-usage-impact-task-pgx-example among choices: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/followup-recommendation|3.0.0, http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/medication-recommendation|3.0.0"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[0].resource/*DiagnosticReport/pgx-report*/.extension[0].value.ofType(Reference)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 303
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[6].resource/*Observation/genotype-pgx-example*/.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 334
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[6].resource/*Observation/genotype-pgx-example*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 303
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[6].resource.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 334
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[6].resource.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 334
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[6].resource.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 334
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[6].resource.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 399
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[7].resource/*Observation/haplotype-1-pgx-example*/.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 427
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[7].resource/*Observation/haplotype-1-pgx-example*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 427
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[7].resource/*Observation/haplotype-1-pgx-example*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 427
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[7].resource/*Observation/haplotype-1-pgx-example*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 492
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 10
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[8].resource/*Observation/haplotype-2-pgx-example*/.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 520
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[8].resource/*Observation/haplotype-2-pgx-example*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 520
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[8].resource/*Observation/haplotype-2-pgx-example*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 520
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[8].resource/*Observation/haplotype-2-pgx-example*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 613
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[9].resource/*Observation/variant-1-pgx-example*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 632
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[9].resource/*Observation/variant-1-pgx-example*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 613
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[9].resource/*Observation/variant-1-pgx-example*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 613
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[9].resource/*Observation/variant-1-pgx-example*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 766
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[10].resource/*Observation/variant-2-pgx-example*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 786
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[10].resource/*Observation/variant-2-pgx-example*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 804
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[10].resource/*Observation/variant-2-pgx-example*/.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 766
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[10].resource/*Observation/variant-2-pgx-example*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 766
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[10].resource/*Observation/variant-2-pgx-example*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 871
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 12
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[11].resource/*MolecularSequence/sequence-1-pgx-example*/.referenceSeq.referenceSeqId.coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 897
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 12
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-pgxexample: Bundle.entry[12].resource/*MolecularSequence/sequence-2-pgx-example*/.referenceSeq.referenceSeqId.coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Bundle-bundle-sequence-phase-relation-CYP2C19",
"resource": {
"resourceType": "OperationOutcome",
"id": "Bundle-bundle-sequence-phase-relation-CYP2C19",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 94
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-sequence-phase-relation-CYP2C19: Bundle.entry[0].resource/*Observation/dv-5c7e9e1ca8252*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 276
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Bundle/bundle-sequence-phase-relation-CYP2C19: Bundle.entry[1].resource/*Observation/dv-5c7e9e1ca82e4*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/CodeSystem-clinvar-evidence-level-custom-cs",
"resource": {
"resourceType": "OperationOutcome",
"id": "CodeSystem-clinvar-evidence-level-custom-cs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/CodeSystem-coded-annotation-types-cs",
"resource": {
"resourceType": "OperationOutcome",
"id": "CodeSystem-coded-annotation-types-cs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/CodeSystem-genomic-study-change-type-cs",
"resource": {
"resourceType": "OperationOutcome",
"id": "CodeSystem-genomic-study-change-type-cs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/CodeSystem-genomic-study-data-format-cs",
"resource": {
"resourceType": "OperationOutcome",
"id": "CodeSystem-genomic-study-data-format-cs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/CodeSystem-genomic-study-method-type-cs",
"resource": {
"resourceType": "OperationOutcome",
"id": "CodeSystem-genomic-study-method-type-cs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/CodeSystem-genomic-study-status-cs",
"resource": {
"resourceType": "OperationOutcome",
"id": "CodeSystem-genomic-study-status-cs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/CodeSystem-genomic-study-type-cs",
"resource": {
"resourceType": "OperationOutcome",
"id": "CodeSystem-genomic-study-type-cs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/CodeSystem-molecular-biomarker-ontology-cs",
"resource": {
"resourceType": "OperationOutcome",
"id": "CodeSystem-molecular-biomarker-ontology-cs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/CodeSystem-pharmgkb-evidence-level-custom-cs",
"resource": {
"resourceType": "OperationOutcome",
"id": "CodeSystem-pharmgkb-evidence-level-custom-cs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/CodeSystem-sequence-phase-relationship-cs",
"resource": {
"resourceType": "OperationOutcome",
"id": "CodeSystem-sequence-phase-relationship-cs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/CodeSystem-tbd-codes-cs",
"resource": {
"resourceType": "OperationOutcome",
"id": "CodeSystem-tbd-codes-cs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/CodeSystem-variant-confidence-status-cs",
"resource": {
"resourceType": "OperationOutcome",
"id": "CodeSystem-variant-confidence-status-cs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ConceptMap-GenomicStudyStatusMap",
"resource": {
"resourceType": "OperationOutcome",
"id": "ConceptMap-GenomicStudyStatusMap"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ConceptMap-dna-change-type-map",
"resource": {
"resourceType": "OperationOutcome",
"id": "ConceptMap-dna-change-type-map",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4669
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id",
"valueCode": "CONCEPTMAP_GROUP_TARGET_INCOMPLETE"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "Target Code System http://www.sequenceontology.org doesn't have all content (content = not-present), so the target codes cannot be checked"
},
"expression": [
"ConceptMap/dna-change-type-map: ConceptMap.group[0].target"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 3844
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'SO:0002073' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs'"
},
"expression": [
"ConceptMap/dna-change-type-map: ConceptMap.group[0].element[0].target[0].code"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 3980
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'SO:0000159' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs'"
},
"expression": [
"ConceptMap/dna-change-type-map: ConceptMap.group[0].element[1].target[0].code"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4105
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'SO:1000035' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs'"
},
"expression": [
"ConceptMap/dna-change-type-map: ConceptMap.group[0].element[2].target[0].code"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4231
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'SO:0000667' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs'"
},
"expression": [
"ConceptMap/dna-change-type-map: ConceptMap.group[0].element[3].target[0].code"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4364
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'SO:1000032' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs'"
},
"expression": [
"ConceptMap/dna-change-type-map: ConceptMap.group[0].element[4].target[0].code"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4485
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'SO:1000036' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs'"
},
"expression": [
"ConceptMap/dna-change-type-map: ConceptMap.group[0].element[5].target[0].code"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4612
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'SO:1000002' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs'"
},
"expression": [
"ConceptMap/dna-change-type-map: ConceptMap.group[0].element[6].target[0].code"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Device-triodenovo-software",
"resource": {
"resourceType": "OperationOutcome",
"id": "Device-triodenovo-software"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/DiagnosticReport-GenomicReportExample01",
"resource": {
"resourceType": "OperationOutcome",
"id": "DiagnosticReport-GenomicReportExample01"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/DiagnosticReport-PGxGenomicReportEMERGE-withGrouping",
"resource": {
"resourceType": "OperationOutcome",
"id": "DiagnosticReport-PGxGenomicReportEMERGE-withGrouping",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 9
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://example.org/hgsc.bcm.edu/lab-test-codes/' could not be found, so the code cannot be validated"
},
"expression": [
"DiagnosticReport/PGxGenomicReportEMERGE-withGrouping: DiagnosticReport.code.coding[1]"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/DiagnosticReport-PGxGenomicReportEMERGE",
"resource": {
"resourceType": "OperationOutcome",
"id": "DiagnosticReport-PGxGenomicReportEMERGE",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 9
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://example.org/hgsc.bcm.edu/lab-test-codes/' could not be found, so the code cannot be validated"
},
"expression": [
"DiagnosticReport/PGxGenomicReportEMERGE: DiagnosticReport.code.coding[1]"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/DiagnosticReport-diagnosticreport-hla-glstring-r4",
"resource": {
"resourceType": "OperationOutcome",
"id": "DiagnosticReport-diagnosticreport-hla-glstring-r4",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 9
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"DiagnosticReport/diagnosticreport-hla-glstring-r4: DiagnosticReport.code.coding[1].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/DiagnosticReport-somaticReport",
"resource": {
"resourceType": "OperationOutcome",
"id": "DiagnosticReport-somaticReport"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/DocumentReference-CNVAnalysis-called",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-CNVAnalysis-called"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/DocumentReference-FullGenome-GRCh38",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-FullGenome-GRCh38"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/DocumentReference-SimpleVariantAnalysis-called",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-SimpleVariantAnalysis-called"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/DocumentReference-UncallableRegions",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-UncallableRegions"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/DocumentReference-WES-FullSequencedRegion-GRCh38",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-WES-FullSequencedRegion-GRCh38"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/DocumentReference-WES-UncallableRegions-GRCh38",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-WES-UncallableRegions-GRCh38"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/DocumentReference-genomicFileFatherBAM",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-genomicFileFatherBAM"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/DocumentReference-genomicFileMotherBAM",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-genomicFileMotherBAM"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/DocumentReference-genomicFileProbandBAM",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-genomicFileProbandBAM"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/DocumentReference-genomicFileProbandVCF",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-genomicFileProbandVCF"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/DocumentReference-genomicVCFfile-cnv",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-genomicVCFfile-cnv"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/DocumentReference-genomicVCFfile-simple",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-genomicVCFfile-simple"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/DocumentReference-somaticVCFfile",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-somaticVCFfile"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/MedicationStatement-MedicationStatementWarfarin",
"resource": {
"resourceType": "OperationOutcome",
"id": "MedicationStatement-MedicationStatementWarfarin"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ATR-insertion-molc",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ATR-insertion-molc",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 81
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ATR-insertion-molc: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 100
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ATR-insertion-molc: Observation.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 100
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ATR-insertion-molc: Observation.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 100
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ATR-insertion-molc: Observation.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 119
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ATR-insertion-molc: Observation.component[3].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 119
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/functional-effect-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ATR-insertion-molc: Observation.component[3].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 119
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/functional-effect-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ATR-insertion-molc: Observation.component[3].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ATR-insertion-significance",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ATR-insertion-significance"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ATR-insertion-var",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ATR-insertion-var",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ATR-insertion-var: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 79
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ATR-insertion-var: Observation.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 79
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ATR-insertion-var: Observation.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 79
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ATR-insertion-var: Observation.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 116
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ATR-insertion-var: Observation.component[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 116
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/ATR-insertion-var: Observation.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 116
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/ATR-insertion-var: Observation.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 183
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ATR-insertion-var: Observation.component[8].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-AnnotationExample",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-AnnotationExample"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-EGFR-L858R-molc",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-EGFR-L858R-molc",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 80
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/EGFR-L858R-molc: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 80
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/EGFR-L858R-molc: Observation.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 80
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/EGFR-L858R-molc: Observation.component[1].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-EGFR-L858R-significance",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-EGFR-L858R-significance"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-EGFR-L858R-therapuDrug1",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-EGFR-L858R-therapuDrug1"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-EGFR-L858R-therapuDrug2",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-EGFR-L858R-therapuDrug2"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-EGFR-L858R-var",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-EGFR-L858R-var",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 76
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/EGFR-L858R-var: Observation.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 76
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/EGFR-L858R-var: Observation.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 76
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/EGFR-L858R-var: Observation.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 113
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/EGFR-L858R-var: Observation.component[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 113
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/EGFR-L858R-var: Observation.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 113
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/EGFR-L858R-var: Observation.component[4].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ExampleGermlineCNV",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ExampleGermlineCNV",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ExampleGermlineCNV: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ExampleGermlineCNV: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ExampleGermlineCNV: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 94
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ExampleGermlineCNV: Observation.component[3].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ExampleGermlineDEL",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ExampleGermlineDEL",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ExampleGermlineDEL: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ExampleGermlineDEL: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ExampleGermlineDEL: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 113
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ExampleGermlineDEL: Observation.component[4].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ExampleGermlineINV",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ExampleGermlineINV",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ExampleGermlineINV: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ExampleGermlineINV: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ExampleGermlineINV: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 113
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ExampleGermlineINV: Observation.component[4].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ExampleSomaticCNV",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ExampleSomaticCNV",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ExampleSomaticCNV: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ExampleSomaticCNV: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ExampleSomaticCNV: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 94
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ExampleSomaticCNV: Observation.component[3].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ExampleSomaticDEL",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ExampleSomaticDEL",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ExampleSomaticDEL: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ExampleSomaticDEL: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ExampleSomaticDEL: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 94
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ExampleSomaticDEL: Observation.component[3].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ExampleSomaticINV",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ExampleSomaticINV",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ExampleSomaticINV: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ExampleSomaticINV: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ExampleSomaticINV: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 94
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ExampleSomaticINV: Observation.component[3].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-Genotype-Clinical-Trial-Example-using-haplotypes",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-Genotype-Clinical-Trial-Example-using-haplotypes",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Genotype-Clinical-Trial-Example-using-haplotypes: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Genotype-Clinical-Trial-Example-using-haplotypes: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Genotype-Clinical-Trial-Example-using-haplotypes: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-GenotypeExample1",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-GenotypeExample1",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 44
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/GenotypeExample1: Observation.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 64
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/GenotypeExample1: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 64
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/GenotypeExample1: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 64
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/GenotypeExample1: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-GenotypeExamplePharmVar",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-GenotypeExamplePharmVar",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/GenotypeExamplePharmVar: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/GenotypeExamplePharmVar: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/GenotypeExamplePharmVar: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-GrouperEx01",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-GrouperEx01"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-GrouperEx02",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-GrouperEx02"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-GrouperEx03",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-GrouperEx03"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-HER2byImmuneStainExample",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-HER2byImmuneStainExample",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 38
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/HER2byImmuneStainExample: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 38
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/HER2byImmuneStainExample: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 38
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/HER2byImmuneStainExample: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-HER2byImmunoassayExample",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-HER2byImmunoassayExample",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 38
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/HER2byImmunoassayExample: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 38
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/HER2byImmunoassayExample: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 38
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/HER2byImmunoassayExample: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-HLA-A-haplotype1",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-HLA-A-haplotype1",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 68
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/HLA-A-haplotype1: Observation.value.ofType(CodeableConcept).coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 46
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/HLA-A-haplotype1: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 46
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/HLA-A-haplotype1: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 46
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/HLA-A-haplotype1: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-HLA-A-haplotype2",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-HLA-A-haplotype2",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 68
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/HLA-A-haplotype2: Observation.value.ofType(CodeableConcept).coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 46
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/HLA-A-haplotype2: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 46
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
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]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 46
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/HLA-A-haplotype2: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-HLA-B-haplotype1",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-HLA-B-haplotype1",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 68
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/HLA-B-haplotype1: Observation.value.ofType(CodeableConcept).coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 46
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/HLA-B-haplotype1: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 46
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/HLA-B-haplotype1: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 46
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/HLA-B-haplotype1: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-HLA-B-haplotype2",
"resource": {
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"id": "Observation-HLA-B-haplotype2",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 68
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/HLA-B-haplotype2: Observation.value.ofType(CodeableConcept).coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 46
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/HLA-B-haplotype2: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
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},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/HLA-B-haplotype2: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 46
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/HLA-B-haplotype2: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-HLA-C-haplotype1",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-HLA-C-haplotype1",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 68
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/HLA-C-haplotype1: Observation.value.ofType(CodeableConcept).coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 46
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/HLA-C-haplotype1: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/HLA-C-haplotype1: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 46
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/HLA-C-haplotype1: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-HLA-C-haplotype2",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-HLA-C-haplotype2",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 68
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/HLA-C-haplotype2: Observation.value.ofType(CodeableConcept).coding[0]"
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},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 46
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/HLA-C-haplotype2: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
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},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/HLA-C-haplotype2: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 46
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/HLA-C-haplotype2: Observation.component[0].value.ofType(CodeableConcept)"
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}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-HaplotypeExamplePharmVar01",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-HaplotypeExamplePharmVar01",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 65
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
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],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated"
},
"expression": [
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},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
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},
{
"extension": [
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"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
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],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
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},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
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],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
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}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-HaplotypeExamplePharmVar02",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-HaplotypeExamplePharmVar02",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
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],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated"
},
"expression": [
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},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
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},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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],
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"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
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},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
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]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-HaplotypeSet-Clinical-Trial-Example-1of2",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-HaplotypeSet-Clinical-Trial-Example-1of2",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 65
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated"
},
"expression": [
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]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/HaplotypeSet-Clinical-Trial-Example-1of2: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
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},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
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]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/HaplotypeSet-Clinical-Trial-Example-1of2: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-HaplotypeSet-Clinical-Trial-Example-2of2",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-HaplotypeSet-Clinical-Trial-Example-2of2",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 65
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/HaplotypeSet-Clinical-Trial-Example-2of2: Observation.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/HaplotypeSet-Clinical-Trial-Example-2of2: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
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},
{
"extension": [
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"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/HaplotypeSet-Clinical-Trial-Example-2of2: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
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],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/HaplotypeSet-Clinical-Trial-Example-2of2: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ISCN-CMLExample",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ISCN-CMLExample",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 65
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'https://iscn.karger.com' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ISCN-CMLExample: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ISCN-CMLImplication",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ISCN-CMLImplication"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ISCN-NormalExample",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ISCN-NormalExample",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 65
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'https://iscn.karger.com' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ISCN-NormalExample: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-MSH2-del-disease",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-MSH2-del-disease"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-MSH2-del-molc",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-MSH2-del-molc",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 80
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/MSH2-del-molc: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 80
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/MSH2-del-molc: Observation.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 80
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/MSH2-del-molc: Observation.component[1].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-MSH2-del-var",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-MSH2-del-var",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/MSH2-del-var: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 63
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/MSH2-del-var: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 63
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/MSH2-del-var: Observation.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 63
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/MSH2-del-var: Observation.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 82
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/MSH2-del-var: Observation.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 82
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/MSH2-del-var: Observation.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 82
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/MSH2-del-var: Observation.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 101
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/MSH2-del-var: Observation.component[3].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-MSIExample",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-MSIExample"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-MicrosatelliteInstabilityExample01",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-MicrosatelliteInstabilityExample01"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-MultipleRepeatExpansions",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-MultipleRepeatExpansions",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 47
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/MultipleRepeatExpansions: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 47
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/MultipleRepeatExpansions: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 47
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/MultipleRepeatExpansions: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 81
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/MultipleRepeatExpansions: Observation.component[2].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-NOTCH1-significance",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-NOTCH1-significance"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-NOTCH1-uncertain-molc",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-NOTCH1-uncertain-molc",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 81
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/NOTCH1-uncertain-molc: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 100
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/NOTCH1-uncertain-molc: Observation.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 100
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/NOTCH1-uncertain-molc: Observation.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 100
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/NOTCH1-uncertain-molc: Observation.component[2].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-NOTCH1-uncertain-var",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-NOTCH1-uncertain-var",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 63
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/NOTCH1-uncertain-var: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 115
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/NOTCH1-uncertain-var: Observation.component[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 115
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/NOTCH1-uncertain-var: Observation.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 115
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/NOTCH1-uncertain-var: Observation.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 182
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/NOTCH1-uncertain-var: Observation.component[8].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-NTHL1-snv-disease",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-NTHL1-snv-disease"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-NTHL1-snv-molc",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-NTHL1-snv-molc",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 80
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/NTHL1-snv-molc: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 80
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/NTHL1-snv-molc: Observation.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 80
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/NTHL1-snv-molc: Observation.component[1].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-NTHL1-snv-var",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-NTHL1-snv-var",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 63
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/NTHL1-snv-var: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 63
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/NTHL1-snv-var: Observation.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 63
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/NTHL1-snv-var: Observation.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 100
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/NTHL1-snv-var: Observation.component[3].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 100
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/NTHL1-snv-var: Observation.component[3].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 100
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/NTHL1-snv-var: Observation.component[3].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 119
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/NTHL1-snv-var: Observation.component[4].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-PDL1Example",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-PDL1Example",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 83
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/PDL1Example: Observation.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 83
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/PDL1Example: Observation.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 83
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/PDL1Example: Observation.component[2].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-Pgx-geno-1001",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-Pgx-geno-1001",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 56
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-geno-1001: Observation.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-geno-1001: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-geno-1001: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-geno-1001: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-Pgx-geno-1002",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-Pgx-geno-1002",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-geno-1002: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-geno-1002: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-geno-1002: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-Pgx-geno-1003",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-Pgx-geno-1003",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-geno-1003: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-geno-1003: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-geno-1003: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-Pgx-var-1011",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-Pgx-var-1011",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1011: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1011: Observation.component[7].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1011: Observation.component[7].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1011: Observation.component[7].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1011: Observation.component[8].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1011: Observation.component[8].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1011: Observation.component[8].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-Pgx-var-1012",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-Pgx-var-1012",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1012: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1012: Observation.component[7].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1012: Observation.component[7].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1012: Observation.component[7].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1012: Observation.component[8].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1012: Observation.component[8].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1012: Observation.component[8].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-Pgx-var-1013",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-Pgx-var-1013",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1013: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1013: Observation.component[7].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1013: Observation.component[7].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1013: Observation.component[7].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1013: Observation.component[8].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1013: Observation.component[8].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1013: Observation.component[8].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-Pgx-var-1014",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-Pgx-var-1014",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1014: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1014: Observation.component[7].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1014: Observation.component[7].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1014: Observation.component[7].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1014: Observation.component[8].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1014: Observation.component[8].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1014: Observation.component[8].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-Pgx-var-1015",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-Pgx-var-1015",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 101
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1015: Observation.component[3].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 101
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1015: Observation.component[3].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 101
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1015: Observation.component[3].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 120
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1015: Observation.component[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 120
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1015: Observation.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 120
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1015: Observation.component[4].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-Pgx-var-1016",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-Pgx-var-1016",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1016: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1016: Observation.component[7].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1016: Observation.component[7].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1016: Observation.component[7].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1016: Observation.component[8].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1016: Observation.component[8].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1016: Observation.component[8].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-Pgx-var-1017",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-Pgx-var-1017",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1017: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1017: Observation.component[7].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1017: Observation.component[7].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1017: Observation.component[7].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1017: Observation.component[8].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1017: Observation.component[8].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1017: Observation.component[8].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-Pgx-var-1018",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-Pgx-var-1018",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1018: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1018: Observation.component[7].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1018: Observation.component[7].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1018: Observation.component[7].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1018: Observation.component[8].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1018: Observation.component[8].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1018: Observation.component[8].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-Pgx-var-1019",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-Pgx-var-1019",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 101
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1019: Observation.component[3].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 101
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1019: Observation.component[3].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 101
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1019: Observation.component[3].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 120
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1019: Observation.component[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 120
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1019: Observation.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 120
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1019: Observation.component[4].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-Pgx-var-1020",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-Pgx-var-1020",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1020: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1020: Observation.component[7].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1020: Observation.component[7].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1020: Observation.component[7].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1020: Observation.component[8].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1020: Observation.component[8].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1020: Observation.component[8].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-Pgx-var-1021",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-Pgx-var-1021",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1021: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1021: Observation.component[7].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1021: Observation.component[7].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 161
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Pgx-var-1021: Observation.component[7].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Pgx-var-1021: Observation.component[8].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1021: Observation.component[8].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/Pgx-var-1021: Observation.component[8].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-PolyGenicDiagnosticImpExample",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-PolyGenicDiagnosticImpExample"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ROS1-Fusion-disease",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ROS1-Fusion-disease"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ROS1-Fusion-therapuDrug",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ROS1-Fusion-therapuDrug"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ROS1-Fusion-therapuTrial",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ROS1-Fusion-therapuTrial",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 80
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://clinicaltrials.gov' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ROS1-Fusion-therapuTrial: Observation.component[2].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ROS1-Fusion-var",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ROS1-Fusion-var",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 58
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ROS1-Fusion-var: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 58
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/ROS1-Fusion-var: Observation.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 58
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/ROS1-Fusion-var: Observation.component[1].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ROS1-Fusion",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ROS1-Fusion",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 60
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ROS1-Fusion: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 60
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/functional-effect-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ROS1-Fusion: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 60
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/functional-effect-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ROS1-Fusion: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-RepeatExpansion",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-RepeatExpansion",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 47
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/RepeatExpansion: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 47
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/RepeatExpansion: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 47
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/RepeatExpansion: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 81
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/RepeatExpansion: Observation.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 137
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/RepeatExpansion: Observation.component[5].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-SNVexample",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-SNVexample",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 81
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/SNVexample: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 81
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/SNVexample: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 81
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/SNVexample: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 194
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/SNVexample: Observation.component[6].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-STAG2-insertion-molc",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-STAG2-insertion-molc",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 81
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/STAG2-insertion-molc: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 100
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/STAG2-insertion-molc: Observation.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 100
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/STAG2-insertion-molc: Observation.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 100
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/STAG2-insertion-molc: Observation.component[2].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-STAG2-insertion-significance",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-STAG2-insertion-significance"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-STAG2-insertion-var",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-STAG2-insertion-var",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 63
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/STAG2-insertion-var: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 97
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/STAG2-insertion-var: Observation.component[3].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 97
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/STAG2-insertion-var: Observation.component[3].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 97
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/STAG2-insertion-var: Observation.component[3].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 134
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/STAG2-insertion-var: Observation.component[5].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 134
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/STAG2-insertion-var: Observation.component[5].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 134
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/STAG2-insertion-var: Observation.component[5].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 201
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/STAG2-insertion-var: Observation.component[9].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-SequencePhaseRelationExample1",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-SequencePhaseRelationExample1"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-TMB-therapuDrug",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-TMB-therapuDrug"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-TMBExample",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-TMBExample"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-Therapeutic-Implication-Clinical-Trial-2",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-Therapeutic-Implication-Clinical-Trial-2",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 78
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://clinicaltrials.gov' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Therapeutic-Implication-Clinical-Trial-2: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-Therapeutic-Implication-Clinical-Trial-Somatic",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-Therapeutic-Implication-Clinical-Trial-Somatic",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 94
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://clinicaltrials.gov' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Therapeutic-Implication-Clinical-Trial-Somatic: Observation.component[2].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-TherapeuticImplicationExample1",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-TherapeuticImplicationExample1"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-TumorMutationBurdenExample01",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-TumorMutationBurdenExample01"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-TxImp01",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-TxImp01"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-TxImp02",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-TxImp02"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-TxImp03",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-TxImp03"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-TxImp04",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-TxImp04"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-TxImp05",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-TxImp05"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-TxImp06",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-TxImp06"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-Variant-Somatic-Clinical-Trial",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-Variant-Somatic-Clinical-Trial",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/Variant-Somatic-Clinical-Trial: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Variant-Somatic-Clinical-Trial: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/Variant-Somatic-Clinical-Trial: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-VariantExample",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-VariantExample",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 65
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/VariantExample: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-VariantExample1",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-VariantExample1"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-VariantExample2",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-VariantExample2",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 74
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/VariantExample2: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ZFHX3-significance",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ZFHX3-significance"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ZFHX3-uncertain-molc",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ZFHX3-uncertain-molc",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 81
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ZFHX3-uncertain-molc: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 100
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ZFHX3-uncertain-molc: Observation.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 100
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ZFHX3-uncertain-molc: Observation.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 100
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/ZFHX3-uncertain-molc: Observation.component[2].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-ZFHX3-uncertain-var",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-ZFHX3-uncertain-var",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 63
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ZFHX3-uncertain-var: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 115
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ZFHX3-uncertain-var: Observation.component[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 115
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/ZFHX3-uncertain-var: Observation.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 115
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/ZFHX3-uncertain-var: Observation.component[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 182
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/ZFHX3-uncertain-var: Observation.component[8].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-diagnosticImplication-interact-smn1-smn2",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-diagnosticImplication-interact-smn1-smn2"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-genotype-hla-a-glstring-r4",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-genotype-hla-a-glstring-r4",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 52
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://glstring.org' version '1.0' could not be found, so the code cannot be validated. Valid versions: []"
},
"expression": [
"Observation/genotype-hla-a-glstring-r4: Observation.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 83
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/genotype-hla-a-glstring-r4: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 83
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/genotype-hla-a-glstring-r4: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 83
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/genotype-hla-a-glstring-r4: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-haplotype-hla-a-1-r4",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-haplotype-hla-a-1-r4",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 52
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.31.0' could not be found, so the code cannot be validated. Valid versions: []"
},
"expression": [
"Observation/haplotype-hla-a-1-r4: Observation.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 75
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/haplotype-hla-a-1-r4: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 75
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/haplotype-hla-a-1-r4: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 75
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/haplotype-hla-a-1-r4: Observation.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-molec-conseq1",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-molec-conseq1",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 51
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 6
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://example.org/pcingola.github.io/SnpEff/se_inputoutput/#impact-prediction' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/molec-conseq1: Observation.interpretation[0].coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 72
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/molec-conseq1: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 91
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/molec-conseq1: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 91
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/molec-conseq1: Observation.component[1].value.ofType(CodeableConcept).coding[1].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 91
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org, http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/molec-conseq1: Observation.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 91
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org, http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/molec-conseq1: Observation.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 115
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/molec-conseq1: Observation.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 115
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/functional-effect-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/molec-conseq1: Observation.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 115
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/functional-effect-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/molec-conseq1: Observation.component[2].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-molec-conseq2",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-molec-conseq2",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 51
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 6
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://example.org/pcingola.github.io/SnpEff/se_inputoutput/#impact-prediction' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/molec-conseq2: Observation.interpretation[0].coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 92
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/molec-conseq2: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 111
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/molec-conseq2: Observation.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 111
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/molec-conseq2: Observation.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 111
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/molec-conseq2: Observation.component[2].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-molec-conseq3",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-molec-conseq3",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 51
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 6
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://example.org/pcingola.github.io/SnpEff/se_inputoutput/#impact-prediction' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/molec-conseq3: Observation.interpretation[0].coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 92
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/molec-conseq3: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 111
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/molec-conseq3: Observation.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 111
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/molec-conseq3: Observation.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 111
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/molec-conseq3: Observation.component[2].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-molec-conseq4",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-molec-conseq4",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 51
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 6
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://example.org/pcingola.github.io/SnpEff/se_inputoutput/#impact-prediction' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/molec-conseq4: Observation.interpretation[0].coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 72
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/molec-conseq4: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 91
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/molec-conseq4: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 91
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/molec-conseq4: Observation.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 91
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/molec-conseq4: Observation.component[1].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-obs-idh-ex",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-obs-idh-ex",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 75
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/obs-idh-ex: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 95
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/obs-idh-ex: Observation.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 95
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/condition-inheritance-mode-vs|3.0.0' because the code system http://human-phenotype-ontology.org was not found"
},
"expression": [
"Observation/obs-idh-ex: Observation.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 95
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/condition-inheritance-mode-vs|3.0.0' because the code system http://human-phenotype-ontology.org was not found"
},
"expression": [
"Observation/obs-idh-ex: Observation.component[2].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-obs1-interact-smn1-smn2",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-obs1-interact-smn1-smn2",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/obs1-interact-smn1-smn2: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/obs1-interact-smn1-smn2: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/obs1-interact-smn1-smn2: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 64
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/obs1-interact-smn1-smn2: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 64
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/obs1-interact-smn1-smn2: Observation.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 64
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/obs1-interact-smn1-smn2: Observation.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 117
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/obs1-interact-smn1-smn2: Observation.component[4].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-obs2-interact-smn1-smn2",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-obs2-interact-smn1-smn2",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/obs2-interact-smn1-smn2: Observation.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/obs2-interact-smn1-smn2: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Observation/obs2-interact-smn1-smn2: Observation.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 64
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/obs2-interact-smn1-smn2: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 64
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Observation/obs2-interact-smn1-smn2: Observation.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 64
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
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]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 117
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/obs2-interact-smn1-smn2: Observation.component[4].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-therapuDrug1-interact-smn1-smn2",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-therapuDrug1-interact-smn1-smn2"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-therapuDrug2-interact-smn1-smn2",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-therapuDrug2-interact-smn1-smn2"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-therapuDrug3-interact-smn1-smn2",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-therapuDrug3-interact-smn1-smn2"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Observation-variant-with-molec-consequences",
"resource": {
"resourceType": "OperationOutcome",
"id": "Observation-variant-with-molec-consequences",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 86
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Observation/variant-with-molec-consequences: Observation.component[1].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/OperationDefinition-find-population-dx-implications",
"resource": {
"resourceType": "OperationOutcome",
"id": "OperationDefinition-find-population-dx-implications"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/OperationDefinition-find-population-molecular-consequences",
"resource": {
"resourceType": "OperationOutcome",
"id": "OperationDefinition-find-population-molecular-consequences"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/OperationDefinition-find-population-specific-haplotypes",
"resource": {
"resourceType": "OperationOutcome",
"id": "OperationDefinition-find-population-specific-haplotypes"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/OperationDefinition-find-population-specific-variants",
"resource": {
"resourceType": "OperationOutcome",
"id": "OperationDefinition-find-population-specific-variants"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/OperationDefinition-find-population-structural-intersecting-variants",
"resource": {
"resourceType": "OperationOutcome",
"id": "OperationDefinition-find-population-structural-intersecting-variants"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/OperationDefinition-find-population-structural-subsuming-variants",
"resource": {
"resourceType": "OperationOutcome",
"id": "OperationDefinition-find-population-structural-subsuming-variants"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/OperationDefinition-find-population-tx-implications",
"resource": {
"resourceType": "OperationOutcome",
"id": "OperationDefinition-find-population-tx-implications"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/OperationDefinition-find-study-metadata",
"resource": {
"resourceType": "OperationOutcome",
"id": "OperationDefinition-find-study-metadata"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/OperationDefinition-find-subject-dx-implications",
"resource": {
"resourceType": "OperationOutcome",
"id": "OperationDefinition-find-subject-dx-implications"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/OperationDefinition-find-subject-haplotypes",
"resource": {
"resourceType": "OperationOutcome",
"id": "OperationDefinition-find-subject-haplotypes"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/OperationDefinition-find-subject-molecular-consequences",
"resource": {
"resourceType": "OperationOutcome",
"id": "OperationDefinition-find-subject-molecular-consequences"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/OperationDefinition-find-subject-specific-haplotypes",
"resource": {
"resourceType": "OperationOutcome",
"id": "OperationDefinition-find-subject-specific-haplotypes"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/OperationDefinition-find-subject-specific-variants",
"resource": {
"resourceType": "OperationOutcome",
"id": "OperationDefinition-find-subject-specific-variants"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/OperationDefinition-find-subject-structural-intersecting-variants",
"resource": {
"resourceType": "OperationOutcome",
"id": "OperationDefinition-find-subject-structural-intersecting-variants"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/OperationDefinition-find-subject-structural-subsuming-variants",
"resource": {
"resourceType": "OperationOutcome",
"id": "OperationDefinition-find-subject-structural-subsuming-variants"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/OperationDefinition-find-subject-tx-implications",
"resource": {
"resourceType": "OperationOutcome",
"id": "OperationDefinition-find-subject-tx-implications"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/OperationDefinition-find-subject-variants",
"resource": {
"resourceType": "OperationOutcome",
"id": "OperationDefinition-find-subject-variants"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Organization-ExampleLab",
"resource": {
"resourceType": "OperationOutcome",
"id": "Organization-ExampleLab"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Organization-ExampleOrg",
"resource": {
"resourceType": "OperationOutcome",
"id": "Organization-ExampleOrg"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Organization-performingOrganization",
"resource": {
"resourceType": "OperationOutcome",
"id": "Organization-performingOrganization"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Parameters-FindALLPopulationSpecificVariantsOutput",
"resource": {
"resourceType": "OperationOutcome",
"id": "Parameters-FindALLPopulationSpecificVariantsOutput"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Parameters-FindANYPopulationSpecificVariantsOutput",
"resource": {
"resourceType": "OperationOutcome",
"id": "Parameters-FindANYPopulationSpecificVariantsOutput"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Parameters-FindPopulationDxImplicationsOutput",
"resource": {
"resourceType": "OperationOutcome",
"id": "Parameters-FindPopulationDxImplicationsOutput"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Parameters-FindPopulationMolecConseqOutput",
"resource": {
"resourceType": "OperationOutcome",
"id": "Parameters-FindPopulationMolecConseqOutput"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Parameters-FindPopulationSpecificHaplotypesOutput",
"resource": {
"resourceType": "OperationOutcome",
"id": "Parameters-FindPopulationSpecificHaplotypesOutput"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Parameters-FindPopulationStructuralIntersectingVariantsOutput",
"resource": {
"resourceType": "OperationOutcome",
"id": "Parameters-FindPopulationStructuralIntersectingVariantsOutput"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Parameters-FindPopulationStructuralSubsumingVariantsOutput",
"resource": {
"resourceType": "OperationOutcome",
"id": "Parameters-FindPopulationStructuralSubsumingVariantsOutput"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Parameters-FindPopulationTxImplicationsOutput",
"resource": {
"resourceType": "OperationOutcome",
"id": "Parameters-FindPopulationTxImplicationsOutput"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Parameters-FindStudyMetadataOutput",
"resource": {
"resourceType": "OperationOutcome",
"id": "Parameters-FindStudyMetadataOutput",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 34
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 12
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindStudyMetadataOutput: Parameters.parameter[0].part[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 34
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 12
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindStudyMetadataOutput: Parameters.parameter[0].part[4].value.ofType(CodeableConcept).coding[1].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 34
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 12
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindStudyMetadataOutput: Parameters.parameter[0].part[4].value.ofType(CodeableConcept).coding[2].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 34
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 12
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindStudyMetadataOutput: Parameters.parameter[0].part[4].value.ofType(CodeableConcept).coding[3].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Parameters-FindSubjectDxImplicationsOutput",
"resource": {
"resourceType": "OperationOutcome",
"id": "Parameters-FindSubjectDxImplicationsOutput",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 195
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectDxImplicationsOutput: Parameters.parameter[1].resource/*Observation/variantExample2*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Parameters-FindSubjectHaplotypesOutput",
"resource": {
"resourceType": "OperationOutcome",
"id": "Parameters-FindSubjectHaplotypesOutput",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 63
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectHaplotypesOutput: Parameters.parameter[0].part[1].resource/*Observation/GenotypeCYP2D6*/.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 86
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 18
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectHaplotypesOutput: Parameters.parameter[0].part[1].resource/*Observation/GenotypeCYP2D6*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 86
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 18
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Parameters/FindSubjectHaplotypesOutput: Parameters.parameter[0].part[1].resource/*Observation/GenotypeCYP2D6*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 86
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 18
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Parameters/FindSubjectHaplotypesOutput: Parameters.parameter[0].part[1].resource/*Observation/GenotypeCYP2D6*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 159
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectHaplotypesOutput: Parameters.parameter[1].part[1].resource/*Observation/GenotypeCYP2C19*/.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 182
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 18
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectHaplotypesOutput: Parameters.parameter[1].part[1].resource/*Observation/GenotypeCYP2C19*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 182
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 18
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Parameters/FindSubjectHaplotypesOutput: Parameters.parameter[1].part[1].resource/*Observation/GenotypeCYP2C19*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 182
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 18
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Parameters/FindSubjectHaplotypesOutput: Parameters.parameter[1].part[1].resource/*Observation/GenotypeCYP2C19*/.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Parameters-FindSubjectMolecConseqOutput",
"resource": {
"resourceType": "OperationOutcome",
"id": "Parameters-FindSubjectMolecConseqOutput",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 61
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 12
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://example.org/pcingola.github.io/SnpEff/se_inputoutput/#impact-prediction' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[0].resource/*Observation/MC1*/.interpretation[0].coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 82
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[0].resource/*Observation/MC1*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 101
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[0].resource/*Observation/MC1*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 101
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[0].resource/*Observation/MC1*/.component[1].value.ofType(CodeableConcept).coding[1].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 125
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[0].resource/*Observation/MC1*/.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 101
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org, http://www.sequenceontology.org was not found"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[0].resource/*Observation/MC1*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 101
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org, http://www.sequenceontology.org was not found"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[0].resource/*Observation/MC1*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 125
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/functional-effect-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[0].resource/*Observation/MC1*/.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 125
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/functional-effect-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[0].resource/*Observation/MC1*/.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 194
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 12
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://example.org/pcingola.github.io/SnpEff/se_inputoutput/#impact-prediction' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[1].resource/*Observation/MC2*/.interpretation[0].coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 235
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[1].resource/*Observation/MC2*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 254
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[1].resource/*Observation/MC2*/.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 254
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[1].resource/*Observation/MC2*/.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 254
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[1].resource/*Observation/MC2*/.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 323
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 12
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://example.org/pcingola.github.io/SnpEff/se_inputoutput/#impact-prediction' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[2].resource/*Observation/MC3*/.interpretation[0].coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 364
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[2].resource/*Observation/MC3*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 383
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[2].resource/*Observation/MC3*/.component[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 383
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[2].resource/*Observation/MC3*/.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 383
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[2].resource/*Observation/MC3*/.component[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 452
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 12
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://example.org/pcingola.github.io/SnpEff/se_inputoutput/#impact-prediction' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[3].resource/*Observation/MC4*/.interpretation[0].coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 473
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[3].resource/*Observation/MC4*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 492
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[3].resource/*Observation/MC4*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 492
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[3].resource/*Observation/MC4*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 492
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[3].resource/*Observation/MC4*/.component[1].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 596
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[0].resource/*Observation/MC1*/.derivedFrom[0].parameter[0].resource/*Observation/variantExampleMC*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Parameters-FindSubjectSpecificHaplotypesOutput",
"resource": {
"resourceType": "OperationOutcome",
"id": "Parameters-FindSubjectSpecificHaplotypesOutput",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 67
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 14
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://glstring.org' version '1.0' could not be found, so the code cannot be validated. Valid versions: []"
},
"expression": [
"Parameters/FindSubjectSpecificHaplotypesOutput: Parameters.parameter[0].part[2].resource/*Observation/Genotype7*/.value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 91
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 18
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectSpecificHaplotypesOutput: Parameters.parameter[0].part[2].resource/*Observation/Genotype7*/.component[0].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 91
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 18
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Parameters/FindSubjectSpecificHaplotypesOutput: Parameters.parameter[0].part[2].resource/*Observation/Genotype7*/.component[0].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 91
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 18
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs|3.0.0' because the code system http://www.genenames.org was not found"
},
"expression": [
"Parameters/FindSubjectSpecificHaplotypesOutput: Parameters.parameter[0].part[2].resource/*Observation/Genotype7*/.component[0].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Parameters-FindSubjectSpecificVariantsOutput",
"resource": {
"resourceType": "OperationOutcome",
"id": "Parameters-FindSubjectSpecificVariantsOutput",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 159
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 18
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated"
},
"expression": [
"Parameters/FindSubjectSpecificVariantsOutput: Parameters.parameter[4].part[2].resource/*Observation/dv-5a7f781e83514*/.component[1].value.ofType(CodeableConcept).coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Parameters-FindSubjectStructuralIntersectingVariantsOutput",
"resource": {
"resourceType": "OperationOutcome",
"id": "Parameters-FindSubjectStructuralIntersectingVariantsOutput",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 87
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 18
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
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{
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{
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{
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{
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{
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"details": {
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],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Procedure/lungMass-analysis1: Procedure.extension[4].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 69
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/genomic-study-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Procedure/lungMass-analysis1: Procedure.extension[4].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 69
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/genomic-study-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Procedure/lungMass-analysis1: Procedure.extension[4].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Procedure-lungMass-analysis2",
"resource": {
"resourceType": "OperationOutcome",
"id": "Procedure-lungMass-analysis2",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"Procedure/lungMass-analysis2: Procedure.extension[2].value.ofType(CodeableConcept).coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/genomic-study-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Procedure/lungMass-analysis2: Procedure.extension[2].value.ofType(CodeableConcept)"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 45
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 8
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "code-invalid",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/genomic-study-change-type-vs|3.0.0' because the code system http://www.sequenceontology.org was not found"
},
"expression": [
"Procedure/lungMass-analysis2: Procedure.extension[2].value.ofType(CodeableConcept)"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Procedure-lungMass",
"resource": {
"resourceType": "OperationOutcome",
"id": "Procedure-lungMass"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Procedure-somaticStudy",
"resource": {
"resourceType": "OperationOutcome",
"id": "Procedure-somaticStudy"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/RiskAssessment-GenRiskDiabetesT2",
"resource": {
"resourceType": "OperationOutcome",
"id": "RiskAssessment-GenRiskDiabetesT2"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ServiceRequest-ExampleServiceRequest",
"resource": {
"resourceType": "OperationOutcome",
"id": "ServiceRequest-ExampleServiceRequest"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ServiceRequest-GenomicServiceRequestExample01",
"resource": {
"resourceType": "OperationOutcome",
"id": "ServiceRequest-GenomicServiceRequestExample01"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ServiceRequest-eMERGEServiceRequest",
"resource": {
"resourceType": "OperationOutcome",
"id": "ServiceRequest-eMERGEServiceRequest",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 5
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 4
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://example.org/hgsc.bcm.edu/lab-test-codes/' could not be found, so the code cannot be validated"
},
"expression": [
"ServiceRequest/eMERGEServiceRequest: ServiceRequest.code.coding[0]"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ServiceRequest-genomicServiceRequest",
"resource": {
"resourceType": "OperationOutcome",
"id": "ServiceRequest-genomicServiceRequest"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ServiceRequest-servicerequest-hla-a-r4",
"resource": {
"resourceType": "OperationOutcome",
"id": "ServiceRequest-servicerequest-hla-a-r4"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ServiceRequest-somaticServiceRequest",
"resource": {
"resourceType": "OperationOutcome",
"id": "ServiceRequest-somaticServiceRequest"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Specimen-ExampleSpecimen",
"resource": {
"resourceType": "OperationOutcome",
"id": "Specimen-ExampleSpecimen"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Specimen-GenomicSpecimenExample01",
"resource": {
"resourceType": "OperationOutcome",
"id": "Specimen-GenomicSpecimenExample01"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Specimen-GenomicSpecimenExample02",
"resource": {
"resourceType": "OperationOutcome",
"id": "Specimen-GenomicSpecimenExample02"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Specimen-genomicSpecimen",
"resource": {
"resourceType": "OperationOutcome",
"id": "Specimen-genomicSpecimen"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Specimen-normalSpecimen",
"resource": {
"resourceType": "OperationOutcome",
"id": "Specimen-normalSpecimen"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Specimen-specimen-hla-r4",
"resource": {
"resourceType": "OperationOutcome",
"id": "Specimen-specimen-hla-r4"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Specimen-tumorSpecimen",
"resource": {
"resourceType": "OperationOutcome",
"id": "Specimen-tumorSpecimen"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-annotation-code",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-annotation-code"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-coded-annotation",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-coded-annotation"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-diagnostic-implication",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-diagnostic-implication",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The definition for the element 'Observation.component.value[x]' binds to the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/evidence-level-example-vs' which is experimental, but this structure is not labeled as experimental"
},
"expression": [
"StructureDefinition/diagnostic-implication: StructureDefinition.snapshot.element[83].binding"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-finding",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-finding"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-followup-recommendation",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-followup-recommendation"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-base",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-base"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-data-file",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-data-file"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-report-note",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-report-note"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-report",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-report"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-risk-assessment",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-risk-assessment"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-study-analysis-change-type",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-study-analysis-change-type"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-study-analysis-device",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-study-analysis-device"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-study-analysis-ext",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-study-analysis-ext"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-study-analysis-focus",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-study-analysis-focus"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-study-analysis-genome-build",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-study-analysis-genome-build"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-study-analysis-genomic-source-class",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-study-analysis-genomic-source-class"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-study-analysis-input",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-study-analysis-input"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-study-analysis-method-type",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-study-analysis-method-type"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-study-analysis-metrics",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-study-analysis-metrics"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-study-analysis-output",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-study-analysis-output"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-study-analysis-protocol-performed",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-study-analysis-protocol-performed"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-study-analysis-regions",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-study-analysis-regions"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-study-analysis-specimen",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-study-analysis-specimen"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-study-analysis-title",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-study-analysis-title"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-study-analysis",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-study-analysis"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-study-reference",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-study-reference"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-study-referrer-ext",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-study-referrer-ext"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genomic-study",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genomic-study",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The definition for the element 'Procedure.code' binds to the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/genomic-study-type-vs' which is experimental, but this structure is not labeled as experimental"
},
"expression": [
"StructureDefinition/genomic-study: StructureDefinition.differential.element[13].binding"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The definition for the element 'Procedure.code' binds to the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/genomic-study-type-vs' which is experimental, but this structure is not labeled as experimental"
},
"expression": [
"StructureDefinition/genomic-study: StructureDefinition.snapshot.element[23].binding"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-genotype",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-genotype"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-haplotype",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-haplotype"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-implication",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-implication",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The definition for the element 'Observation.component.value[x]' binds to the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/evidence-level-example-vs' which is experimental, but this structure is not labeled as experimental"
},
"expression": [
"StructureDefinition/implication: StructureDefinition.differential.element[13].binding"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The definition for the element 'Observation.component.value[x]' binds to the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/evidence-level-example-vs' which is experimental, but this structure is not labeled as experimental"
},
"expression": [
"StructureDefinition/implication: StructureDefinition.snapshot.element[82].binding"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-medication-assessed-reference",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-medication-assessed-reference"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-medication-recommendation",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-medication-recommendation"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-molecular-biomarker",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-molecular-biomarker",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The definition for the element 'Observation.component.value[x]' binds to the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-biomarker-category-vs' which is experimental, but this structure is not labeled as experimental"
},
"expression": [
"StructureDefinition/molecular-biomarker: StructureDefinition.differential.element[18].binding"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The definition for the element 'Observation.component.value[x]' binds to the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-biomarker-category-vs' which is experimental, but this structure is not labeled as experimental"
},
"expression": [
"StructureDefinition/molecular-biomarker: StructureDefinition.snapshot.element[82].binding"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-molecular-consequence",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-molecular-consequence",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The definition for the element 'Observation.component.value[x]' binds to the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/evidence-level-example-vs' which is experimental, but this structure is not labeled as experimental"
},
"expression": [
"StructureDefinition/molecular-consequence: StructureDefinition.snapshot.element[82].binding"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-recommended-action",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-recommended-action"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-repeat-motif-order",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-repeat-motif-order"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-sequence-phase-relationship",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-sequence-phase-relationship"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-therapeutic-implication",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-therapeutic-implication",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The definition for the element 'Observation.component.value[x]' binds to the value set 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/evidence-level-example-vs' which is experimental, but this structure is not labeled as experimental"
},
"expression": [
"StructureDefinition/therapeutic-implication: StructureDefinition.snapshot.element[82].binding"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-therapy-assessed-reference",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-therapy-assessed-reference"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-variant",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-variant"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/StructureDefinition-workflow-relatedArtifactComponent",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-workflow-relatedArtifactComponent"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Task-MedicationRecommendationExample1",
"resource": {
"resourceType": "OperationOutcome",
"id": "Task-MedicationRecommendationExample1"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Task-PGxRecEx01",
"resource": {
"resourceType": "OperationOutcome",
"id": "Task-PGxRecEx01"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Task-PGxRecEx02",
"resource": {
"resourceType": "OperationOutcome",
"id": "Task-PGxRecEx02"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Task-PGxRecEx03",
"resource": {
"resourceType": "OperationOutcome",
"id": "Task-PGxRecEx03"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Task-PGxRecEx04",
"resource": {
"resourceType": "OperationOutcome",
"id": "Task-PGxRecEx04"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/Task-PGxRecEx05",
"resource": {
"resourceType": "OperationOutcome",
"id": "Task-PGxRecEx05"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-coded-annotation-types-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-coded-annotation-types-vs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-condition-inheritance-mode-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-condition-inheritance-mode-vs",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 2739
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'HP:0000006' is not valid in the system http://human-phenotype-ontology.org (Unable to evaluate based on code system with status = not-present)"
},
"expression": [
"ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'HP:0000007' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)"
},
"expression": [
"ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[1]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'HP:0001417' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)"
},
"expression": [
"ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[2]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'HP:0001419' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)"
},
"expression": [
"ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[3]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'HP:0001423' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)"
},
"expression": [
"ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[4]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'HP:0001426' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)"
},
"expression": [
"ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[5]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'HP:0001427' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)"
},
"expression": [
"ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[6]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'HP:0001442' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)"
},
"expression": [
"ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[7]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'HP:0001450' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)"
},
"expression": [
"ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[8]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'HP:0001470' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)"
},
"expression": [
"ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[9]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'HP:0003743' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)"
},
"expression": [
"ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[10]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'HP:0003745' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)"
},
"expression": [
"ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[11]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'HP:0010983' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)"
},
"expression": [
"ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[12]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'HP:0012274' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)"
},
"expression": [
"ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[13]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'HP:0012275' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)"
},
"expression": [
"ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[14]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'HP:0025352' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)"
},
"expression": [
"ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[15]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The code 'HP:0032113' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)"
},
"expression": [
"ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[16]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "exception",
"details": {
"text": "Error from http://tx.fhir.org/r4: Unable to provide support for code system http://human-phenotype-ontology.org"
},
"expression": [
"ValueSet.where(id = 'condition-inheritance-mode-vs')"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-dna-change-type-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-dna-change-type-vs",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "exception",
"details": {
"text": "Error from http://tx.fhir.org/r4: Unable to provide support for code system http://www.sequenceontology.org"
},
"expression": [
"ValueSet.where(id = 'dna-change-type-vs')"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-evidence-level-example-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-evidence-level-example-vs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-functional-effect-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-functional-effect-vs",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "exception",
"details": {
"text": "Error from http://tx.fhir.org/r4: Unable to provide support for code system http://www.sequenceontology.org"
},
"expression": [
"ValueSet.where(id = 'functional-effect-vs')"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-genetic-therapeutic-implications-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-genetic-therapeutic-implications-vs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-genomic-study-change-type-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-genomic-study-change-type-vs",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "exception",
"details": {
"text": "Error from http://tx.fhir.org/r4: Unable to provide support for code system http://www.sequenceontology.org"
},
"expression": [
"ValueSet.where(id = 'genomic-study-change-type-vs')"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-genomic-study-data-format-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-genomic-study-data-format-vs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-genomic-study-method-type-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-genomic-study-method-type-vs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-genomic-study-status-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-genomic-study-status-vs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-genomic-study-type-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-genomic-study-type-vs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-hgnc-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-hgnc-vs",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "exception",
"details": {
"text": "Error from http://tx.fhir.org/r4: Unable to provide support for code system http://www.genenames.org"
},
"expression": [
"ValueSet.where(id = 'hgnc-vs')"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-hgvs-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-hgvs-vs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-molecular-biomarker-category-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-molecular-biomarker-category-vs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-molecular-biomarker-code-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-molecular-biomarker-code-vs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-molecular-consequence-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-molecular-consequence-vs",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "exception",
"details": {
"text": "Error from http://tx.fhir.org/r4: Unable to provide support for code system http://www.sequenceontology.org"
},
"expression": [
"ValueSet.where(id = 'molecular-consequence-vs')"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-sequence-phase-relationship-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-sequence-phase-relationship-vs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-tbd-codes-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-tbd-codes-vs"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/genomics-reporting/OperationOutcome/ValueSet-variant-confidence-status-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-variant-confidence-status-vs"
}
}
]
}